Lpar4 (lysophosphatidic acid receptor 4) - Rat Genome Database

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Gene: Lpar4 (lysophosphatidic acid receptor 4) Ictidomys tridecemlineatus
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Symbol: Lpar4
Name: lysophosphatidic acid receptor 4
RGD ID: 12713709
Description: ENCODES a protein that exhibits lysophosphatidic acid binding (ortholog); lysophosphatidic acid receptor activity (ortholog); ASSOCIATED WITH autistic disorder (ortholog); syndromic X-linked intellectual disability Lubs type (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); nuclear body (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: lysophosphatidic acid receptor 4, transcript variant X1; lysophosphatidic acid receptor 4, transcript variant X2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X54,501,599 - 54,514,883 (+)NCBI
SpeTri2.0NW_004936547821,950 - 834,069 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Lpar4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X54,501,599 - 54,514,883 (+)NCBI
SpeTri2.0NW_004936547821,950 - 834,069 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LPAR4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX78,747,709 - 78,758,714 (+)EnsemblGRCh38hg38GRCh38
GRCh38X78,747,658 - 78,758,714 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X78,003,217 - 78,012,609 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X77,896,957 - 77,899,249 (+)NCBINCBI36hg18NCBI36
Build 34X77,816,445 - 77,818,733NCBI
CeleraX78,243,611 - 78,252,993 (+)NCBI
Cytogenetic MapXq21.1NCBI
HuRefX71,584,019 - 71,593,185 (+)NCBIHuRef
CHM1_1X77,896,235 - 77,905,616 (+)NCBICHM1_1
Lpar4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X105,964,231 - 105,977,505 (+)NCBIGRCm39mm39
GRCm39 EnsemblX105,964,231 - 105,977,506 (+)Ensembl
GRCm38X106,920,625 - 106,933,899 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX106,920,625 - 106,933,900 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X104,115,964 - 104,129,238 (+)NCBIGRCm37mm9NCBIm37
MGSCv36X103,123,375 - 103,135,151 (+)NCBImm8
CeleraX93,766,647 - 93,780,135 (+)NCBICelera
Cytogenetic MapXDNCBI
Lpar4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X72,033,486 - 72,046,978 (+)NCBImRatBN7.2
Rnor_6.0 EnsemblX78,042,859 - 78,056,347 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0X78,042,859 - 78,056,347 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X78,237,912 - 78,251,631 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X95,180,476 - 95,194,380 (+)NCBIRGSC3.4rn4RGSC3.4
CeleraX73,333,463 - 73,346,943 (+)NCBICelera
Cytogenetic MapXq22NCBI
LPAR4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X77,997,762 - 78,007,810 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0X67,887,929 - 67,899,287 (+)NCBIMhudiblu_PPA_v0panPan3
LPAR4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X60,828,462 - 60,840,053 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX60,838,170 - 60,839,282 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX51,840,269 - 51,852,543 (+)NCBI
ROS_Cfam_1.0X62,081,200 - 62,093,456 (+)NCBI
UMICH_Zoey_3.1X59,772,817 - 59,785,084 (+)NCBI
UNSW_CanFamBas_1.0X61,377,993 - 61,390,257 (+)NCBI
UU_Cfam_GSD_1.0X60,976,943 - 60,989,213 (+)NCBI
LPAR4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX62,862,213 - 62,873,085 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X62,862,158 - 62,876,184 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X71,950,203 - 71,962,681 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103232244
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X67,755,081 - 67,770,690 (+)NCBI
ChlSab1.1 EnsemblX67,764,914 - 67,766,026 (+)Ensembl
Vero_WHO_p1.0NW_0236679094,274 - 10,125 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005328817   ⟹   XP_005328874
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X54,502,106 - 54,514,883 (+)NCBI
SpeTri2.0NW_004936547822,486 - 834,069 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021728762   ⟹   XP_021584437
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X54,501,599 - 54,514,883 (+)NCBI
SpeTri2.0NW_004936547821,950 - 834,069 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040282588   ⟹   XP_040138522
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X54,502,649 - 54,514,883 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005328874 (Get FASTA)   NCBI Sequence Viewer  
  XP_021584437 (Get FASTA)   NCBI Sequence Viewer  
  XP_040138522 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3272475 (Get FASTA)   NCBI Sequence Viewer  
  KAG3272476 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005328874   ⟸   XM_005328817
- UniProtKB: I3N939 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021584437   ⟸   XM_021728762
- Sequence:
RefSeq Acc Id: XP_040138522   ⟸   XM_040282588
Protein Domains
G_PROTEIN_RECEP_F1_2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000014696 ENTREZGENE
Ensembl Protein ENSSTOP00000020885 ENTREZGENE
NCBI Gene Lpar4 ENTREZGENE
UniProt I3N939 ENTREZGENE