Advanced Search (OLGA)

Gene: Tusc1 (tumor suppressor candidate 1) Ictidomys tridecemlineatus

Analyze

Symbol:

Tusc1

Name:

tumor suppressor candidate 1

RGD ID:

12701574

Description:

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	158,997,724 - 158,999,323 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936611	3,669,415 - 3,670,017 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936611	3,669,285 - 3,670,372 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

Comparative Map Data

Tusc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	158,997,724 - 158,999,323 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936611	3,669,415 - 3,670,017 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936611	3,669,285 - 3,670,372 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TUSC1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	25,676,969 - 25,678,444 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	25,676,969 - 25,678,444 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	25,676,967 - 25,678,442 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	25,666,387 - 25,668,856 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	9	25,603,429 - 25,605,898 (-)	NCBI		Celera
Cytogenetic Map	9	p21.2	NCBI
HuRef	9	25,628,732 - 25,631,200 (-)	NCBI		HuRef
CHM1_1	9	25,676,275 - 25,678,743 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	25,687,486 - 25,688,961 (-)	NCBI		T2T-CHM13v2.0

Tusc1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	93,222,385 - 93,223,748 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	93,222,375 - 93,223,748 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	93,334,148 - 93,335,511 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	93,334,138 - 93,335,511 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	93,000,839 - 93,002,202 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	92,826,166 - 92,827,529 (-)	NCBI		MGSCv36	mm8
Celera	4	91,762,728 - 91,764,037 (-)	NCBI		Celera
Cytogenetic Map	4	C5	NCBI
cM Map	4	43.25	NCBI

Tusc1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	113,205,748 - 113,207,111 (-)	NCBI		GRCr8
mRatBN7.2	5	108,089,952 - 108,091,315 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	108,090,613 - 108,091,224 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	110,603,769 - 110,605,134 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	112,329,524 - 112,330,889 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	112,391,791 - 112,393,156 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Cytogenetic Map	5	q32	NCBI

TUSC1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	98,859,180 - 98,865,060 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	98,865,128 - 98,871,004 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	25,526,822 - 25,529,415 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	26,139,915 - 26,149,810 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

TUSC1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Dog10K_Boxer_Tasha	11	42,799,680 - 42,800,342 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	45,068,249 - 45,068,911 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	45,068,249 - 45,068,920 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	43,728,402 - 43,729,064 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	43,620,995 - 43,621,732 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	44,368,166 - 44,368,828 (-)	NCBI		UU_Cfam_GSD_1.0

TUSC1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	197,309,229 - 197,309,864 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	197,240,649 - 197,312,349 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	219,726,003 - 219,727,399 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Tusc1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624736	29,855,592 - 29,856,416 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005334192	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000023555 ⟹ ENSSTOP00000016760

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936611	3,669,415 - 3,670,017 (+)	Ensembl

RefSeq Acc Id:

XM_005334192 ⟹ XP_005334249

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	158,997,724 - 158,999,323 (-)	NCBI
SpeTri2.0	NW_004936611	3,669,285 - 3,670,372 (+)	NCBI

Sequence:

show sequence

CCAGCAGTCGCCGCTCGCCACCTCTCTACTCTGCTGTCGCCGGACCGCCCCGCCGGGTCCCGAA
CTCGTCCGCGCCCTGGCGCGCGGCCCCCGGGCCCTTGGCGCTGGCGGCGCGGTTAGGACCGCAC
GGATGTGGCGCATGCGTGGTGGCGCCACCCGGCGCGGGAGCTGTGGCTGCGGGGACACAGATGG
GCCCGGCCGCCGGGGCCGGGTTCCGCAGCGCGGCGGAGGTGACGGGAGTTGGCGAGGCCGTGCG
GGTGGCGCCCGACAGCAGCTGGAGGAGCGTTTCGCGGACCTGGCAGCGAGCCACCTGGAGGCCA
TCCGCGCGCGGGACGAGCGGGACCGGCAGAACGCGAGGCTGCGCGAGGAGAACGCCCGGCTGCG
GCTCGAGAACCGGCGGCTGAAGCGCGAGAACCGCAGCCTCTTCCGTCAGGCTTTGCGGCTCCAG
GGGGAGGGCGGCGACCGGATGGCCGCAGAGGCGGCCCTGGGTCCCCCGGAGGCTGGCACGAACC
GGAGGGAGAGAGGTGGTCGCCGTGAGGATGAACCAGGCAGCCCCAGGGCCTTGAGGGCCCGGCT
GGAGAAGCTGGAGGCCATGTACCGCAGGGCCCTGCTGCAGCTGCACCTGGAACAGCAAGGGCCG
CGCCCGCGTGTGGACAAGGAGGAGCCGCCTGTGCAGGAGCCTGACTCTGGCCTCTGTGCCCAGG
ACCCGGCGCCCCCAGGGCCCTGGCTGTAGCCTCTGGCCTCAGCCGGGAGAGGCGGGGCGTCCCT
AGCGCCCCTCCTTCCGCGCTCACTGCTTCCCCACCCTACACTGCTGGACCACTGAGCTCAGTGC
CTCCAGCCCACCACCTGACACTTCCGGTGGCGCCCTGCCTCTGCCCGCGGGGTCCTGCCAGTGT
CTGGGCTCTGGAGCCCCCATGTGTGTGGGCACCTGCTTCTGGGCCCTGCTGGTTCCACCGGAAG
AGGCCCTGCAACAGAAGCGCGGGTTTTGAAACAGCAAGAACTGGTTCCTGGAAGCTCTTCCTAA
TTCATGAACCTTTCTAAGTGTATTTTTTGTTTCTCAATAATAATTCTTTGAGGGCTGAATAATG

hide sequence

Protein Sequences


Protein RefSeqs	XP_005334249	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000016760.2
GenBank Protein	KAG3287344	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005334249 ⟸ XM_005334192

- UniProtKB:

I3MXB5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MWRMRGGATRRGSCGCGDTDGPGRRGRVPQRGGGDGSWRGRAGGARQQLEERFADLAASHLEAI
RARDERDRQNARLREENARLRLENRRLKRENRSLFRQALRLQGEGGDRMAAEAALGPPEAGTNR
RERGGRREDEPGSPRALRARLEKLEAMYRRALLQLHLEQQGPRPRVDKEEPPVQEPDSGLCAQD
PAPPGPWL

hide sequence

Ensembl Acc Id:

ENSSTOP00000016760 ⟸ ENSSTOT00000023555

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000019804	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000023555.2	UniProtKB/TrEMBL
InterPro	CCDC89-like	UniProtKB/TrEMBL
NCBI Gene	Tusc1	ENTREZGENE
PANTHER	PTHR34768	UniProtKB/TrEMBL
	TUMOR SUPPRESSOR CANDIDATE GENE 1 PROTEIN	UniProtKB/TrEMBL
UniProt	I3MXB5	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message