Ankib1 (ankyrin repeat and IBR domain containing 1) - Rat Genome Database

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Gene: Ankib1 (ankyrin repeat and IBR domain containing 1) Ictidomys tridecemlineatus
Analyze
Symbol: Ankib1
Name: ankyrin repeat and IBR domain containing 1
RGD ID: 12700201
Description: ENCODES a protein that exhibits metal ion binding (inferred); transferase activity (inferred); ubiquitin conjugating enzyme binding (inferred); INVOLVED IN positive regulation of proteasomal ubiquitin-dependent protein catabolic process (inferred); protein polyubiquitination (inferred); protein ubiquitination (inferred); ASSOCIATED WITH Angiokeratoma Corporis Diffusum with Arteriovenous Fistulas (ortholog); cerebral cavernous malformation (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred); ubiquitin ligase complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ankyrin repeat and IBR domain containing 1, transcript variant X1; ankyrin repeat and IBR domain containing 1, transcript variant X2; ankyrin repeat and IBR domain containing 1, transcript variant X3; ankyrin repeat and IBR domain containing 1, transcript variant X4; ankyrin repeat and IBR domain-containing protein 1; LOC101963548
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511831,279,940 - 31,405,980 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049368031,393,954 - 1,423,068 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049368031,393,918 - 1,423,086 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ankib1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511831,279,940 - 31,405,980 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049368031,393,954 - 1,423,068 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049368031,393,918 - 1,423,086 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKIB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38792,245,974 - 92,401,383 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl792,245,974 - 92,401,383 (+)EnsemblGRCh38hg38GRCh38
GRCh37791,875,288 - 92,030,697 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36791,713,484 - 91,868,634 (+)NCBINCBI36Build 36hg18NCBI36
Build 34791,520,198 - 91,673,298NCBI
Celera786,580,099 - 86,735,226 (+)NCBICelera
Cytogenetic Map7q21.2NCBI
HuRef786,483,537 - 86,639,103 (+)NCBIHuRef
CHM1_1791,805,584 - 91,960,744 (+)NCBICHM1_1
T2T-CHM13v2.0793,487,261 - 93,642,673 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2791,204,781 - 91,359,905 (+)NCBI
Ankib1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3953,739,999 - 3,853,124 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl53,740,000 - 3,852,925 (-)EnsemblGRCm39 Ensembl
GRCm3853,689,999 - 3,803,124 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl53,690,000 - 3,802,925 (-)EnsemblGRCm38mm10GRCm38
MGSCv3753,690,000 - 3,803,109 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3653,696,006 - 3,808,931 (-)NCBIMGSCv36mm8
Celera53,625,895 - 3,739,396 (-)NCBICelera
Cytogenetic Map5A1NCBI
cM Map52.26NCBI
Ankib1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8431,288,393 - 31,412,500 (+)NCBIGRCr8
mRatBN7.2430,333,678 - 30,457,781 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl430,333,677 - 30,457,781 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx435,306,423 - 35,430,537 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0431,232,507 - 31,356,616 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0429,628,494 - 29,752,618 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0427,473,477 - 27,597,206 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl427,473,477 - 27,597,206 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0427,376,468 - 27,500,432 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4427,048,963 - 27,172,970 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera425,758,637 - 25,882,441 (+)NCBICelera
Cytogenetic Map4q13NCBI
Ankib1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554329,220,318 - 9,358,728 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554329,220,318 - 9,358,728 (+)NCBIChiLan1.0ChiLan1.0
ANKIB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26110,131,814 - 110,287,237 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17158,396,446 - 158,551,502 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0784,243,929 - 84,399,358 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1797,841,233 - 97,995,816 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl797,841,233 - 97,995,816 (+)Ensemblpanpan1.1panPan2
ANKIB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11417,835,582 - 18,007,077 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1417,837,117 - 18,004,106 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1417,328,573 - 17,567,988 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01417,573,983 - 17,813,483 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1417,679,057 - 17,812,824 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11417,732,244 - 17,974,376 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01417,446,722 - 17,686,489 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01417,720,644 - 17,959,856 (+)NCBIUU_Cfam_GSD_1.0
ANKIB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl972,184,815 - 72,328,763 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1972,184,805 - 72,328,765 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2978,914,444 - 79,058,059 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ANKIB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12156,621,669 - 56,770,553 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2156,624,114 - 56,718,920 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604247,502,852 - 47,658,541 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ankib1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624809790,496 - 927,430 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624809787,932 - 978,315 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000000723   ⟹   ENSSTOP00000000647
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049368031,393,954 - 1,423,068 (-)Ensembl
RefSeq Acc Id: XM_040291487   ⟹   XP_040147421
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511831,280,091 - 31,405,980 (+)NCBI
RefSeq Acc Id: XM_040291488   ⟹   XP_040147422
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511831,279,940 - 31,405,980 (+)NCBI
RefSeq Acc Id: XM_040291489   ⟹   XP_040147423
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511831,280,091 - 31,405,980 (+)NCBI
RefSeq Acc Id: XM_040291490   ⟹   XP_040147424
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511831,280,091 - 31,405,980 (+)NCBI
RefSeq Acc Id: XM_040291491   ⟹   XP_040147425
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511831,318,543 - 31,405,980 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_040147422   ⟸   XM_040291488
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040147421   ⟸   XM_040291487
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040147423   ⟸   XM_040291489
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040147424   ⟸   XM_040291490
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040147425   ⟸   XM_040291491
- Peptide Label: isoform X5
RefSeq Acc Id: ENSSTOP00000000647   ⟸   ENSSTOT00000000723
Protein Domains
RING-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000000720 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000000723.3 UniProtKB/TrEMBL
Gene3D-CATH 1.20.120.1750 UniProtKB/TrEMBL
InterPro Ariadne UniProtKB/TrEMBL
  E3_UB_ligase_RBR UniProtKB/TrEMBL
  IBR_dom UniProtKB/TrEMBL
  Rcat_RBR_ANKIB1 UniProtKB/TrEMBL
  TRIAD_supradom UniProtKB/TrEMBL
  UIM_dom UniProtKB/TrEMBL
NCBI Gene Ankib1 ENTREZGENE
PANTHER ANKYRIN REPEAT AND IBR DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  PTHR11685 UniProtKB/TrEMBL
Pfam Ariadne UniProtKB/TrEMBL
  IBR UniProtKB/TrEMBL
PROSITE TRIAD UniProtKB/TrEMBL
  UIM UniProtKB/TrEMBL
SMART IBR UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
UniProt I3LX83_ICTTR UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-25 Ankib1  ankyrin repeat and IBR domain containing 1  LOC101963548  ankyrin repeat and IBR domain-containing protein 1  Data merged from RGD:12507149 737654 PROVISIONAL