Lin9 (lin-9 DREAM MuvB core complex component) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Lin9 (lin-9 DREAM MuvB core complex component) Ictidomys tridecemlineatus
Analyze
Symbol: Lin9
Name: lin-9 DREAM MuvB core complex component
RGD ID: 12686347
Description: ENCODES a protein that exhibits DNA binding (inferred); INVOLVED IN DNA-templated transcription (inferred); regulation of cell cycle (inferred); regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred); transcription repressor complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: lin-9 homolog; protein lin-9 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934451,686,267 - 51,754,210 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365262,993,087 - 3,061,030 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365262,993,087 - 3,061,024 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Lin9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934451,686,267 - 51,754,210 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365262,993,087 - 3,061,030 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365262,993,087 - 3,061,024 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LIN9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381226,231,149 - 226,309,767 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1226,231,149 - 226,309,869 (-)EnsemblGRCh38hg38GRCh38
GRCh371226,418,850 - 226,497,468 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361224,485,484 - 224,563,821 (-)NCBINCBI36Build 36hg18NCBI36
Build 341222,725,595 - 222,803,933NCBI
Celera1199,609,841 - 199,688,109 (-)NCBICelera
Cytogenetic Map1q42.12NCBI
HuRef1196,936,105 - 197,014,696 (-)NCBIHuRef
CHM1_11227,691,754 - 227,770,370 (-)NCBICHM1_1
T2T-CHM13v2.01225,419,172 - 225,497,821 (-)NCBIT2T-CHM13v2.0
Lin9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391180,468,715 - 180,518,252 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1180,468,715 - 180,518,259 (+)EnsemblGRCm39 Ensembl
GRCm381180,641,150 - 180,690,687 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1180,641,150 - 180,690,694 (+)EnsemblGRCm38mm10GRCm38
MGSCv371182,571,465 - 182,620,818 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361182,478,028 - 182,518,303 (+)NCBIMGSCv36mm8
Celera1187,709,835 - 187,752,150 (+)NCBICelera
Cytogenetic Map1H4NCBI
cM Map184.46NCBI
Lin9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81394,906,185 - 94,951,541 (+)NCBIGRCr8
mRatBN7.21392,374,612 - 92,419,664 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1445,878,685 - 45,880,763 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1392,374,593 - 92,419,654 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1394,880,320 - 94,925,061 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01396,280,267 - 96,325,008 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01393,454,960 - 93,499,704 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01398,924,728 - 98,969,051 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1398,924,962 - 98,967,735 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013103,926,344 - 103,971,107 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41396,377,751 - 96,423,915 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1391,921,665 - 91,965,418 (+)NCBICelera
Cytogenetic Map13q26NCBI
Lin9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955489430,472 - 491,733 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955489431,063 - 491,729 (-)NCBIChiLan1.0ChiLan1.0
LIN9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2123,228,678 - 23,308,426 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1123,177,165 - 23,256,899 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01201,690,431 - 201,770,170 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11206,684,578 - 206,763,281 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1206,684,578 - 206,763,796 (-)Ensemblpanpan1.1panPan2
LIN9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1738,571,890 - 38,647,354 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl738,575,012 - 38,647,481 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha738,049,825 - 38,128,788 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0738,402,126 - 38,481,153 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl738,401,789 - 38,481,897 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1738,240,856 - 38,319,816 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0738,247,787 - 38,326,715 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0738,518,901 - 38,598,124 (+)NCBIUU_Cfam_GSD_1.0
LIN9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1014,109,768 - 14,184,586 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11014,109,768 - 14,184,027 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21015,627,016 - 15,663,184 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LIN9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1253,450,692 - 3,538,088 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl253,462,891 - 3,538,077 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660553,451,488 - 3,537,951 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lin9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624807334,788 - 402,739 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000015996   ⟹   ENSSTOP00000014315
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365262,993,087 - 3,061,030 (-)Ensembl
Ensembl Acc Id: ENSSTOT00000033484   ⟹   ENSSTOP00000024731
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365262,993,091 - 3,061,024 (-)Ensembl
RefSeq Acc Id: XM_005326541   ⟹   XP_005326598
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934451,686,267 - 51,754,210 (+)NCBI
SpeTri2.0NW_0049365262,993,087 - 3,061,024 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040278616   ⟹   XP_040134550
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934451,697,418 - 51,754,210 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005326598 (Get FASTA)   NCBI Sequence Viewer  
  XP_040134550 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000014315.3
  ENSSTOP00000024731.1
GenBank Protein KAG3258001 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005326598   ⟸   XM_005326541
- Peptide Label: isoform X1
- UniProtKB: I3MQQ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040134550   ⟸   XM_040278616
- Peptide Label: isoform X2
Ensembl Acc Id: ENSSTOP00000024731   ⟸   ENSSTOT00000033484
Ensembl Acc Id: ENSSTOP00000014315   ⟸   ENSSTOT00000015996
Protein Domains
DIRP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000015992 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000015996.3 UniProtKB/TrEMBL
  ENSSTOT00000033484.1 UniProtKB/TrEMBL
InterPro DIRP UniProtKB/TrEMBL
  LIN-9/ALY1 UniProtKB/TrEMBL
  LIN9_C UniProtKB/TrEMBL
NCBI Gene Lin9 ENTREZGENE
PANTHER PROTEIN LIN-9 HOMOLOG UniProtKB/TrEMBL
  PTHR21689 UniProtKB/TrEMBL
Pfam DIRP UniProtKB/TrEMBL
  LIN9_C UniProtKB/TrEMBL
SMART DIRP UniProtKB/TrEMBL
UniProt A0A287CTX0_ICTTR UniProtKB/TrEMBL
  I3MQQ9 ENTREZGENE, UniProtKB/TrEMBL