Lin9 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | NW_024409344 | 51,686,267 - 51,754,210 (+) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936526 | 2,993,087 - 3,061,030 (-) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936526 | 2,993,087 - 3,061,024 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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LIN9 (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 1 | 226,231,149 - 226,309,767 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 1 | 226,231,149 - 226,309,869 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 1 | 226,418,850 - 226,497,468 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 1 | 224,485,484 - 224,563,821 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 1 | 222,725,595 - 222,803,933 | NCBI | | | | | Celera | 1 | 199,609,841 - 199,688,109 (-) | NCBI | | Celera | | | Cytogenetic Map | 1 | q42.12 | NCBI | | | | | HuRef | 1 | 196,936,105 - 197,014,696 (-) | NCBI | | HuRef | | | CHM1_1 | 1 | 227,691,754 - 227,770,370 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 1 | 225,419,172 - 225,497,821 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Lin9 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 1 | 180,468,715 - 180,518,252 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 1 | 180,468,715 - 180,518,259 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 1 | 180,641,150 - 180,690,687 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 1 | 180,641,150 - 180,690,694 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 1 | 182,571,465 - 182,620,818 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 1 | 182,478,028 - 182,518,303 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 1 | 187,709,835 - 187,752,150 (+) | NCBI | | Celera | | | Cytogenetic Map | 1 | H4 | NCBI | | | | | cM Map | 1 | 84.46 | NCBI | | | | |
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Lin9 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 13 | 94,906,185 - 94,951,541 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 13 | 92,374,612 - 92,419,664 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 14 | 45,878,685 - 45,880,763 (-) | Ensembl | | mRatBN7.2 Ensembl | | | mRatBN7.2 Ensembl | 13 | 92,374,593 - 92,419,654 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 13 | 94,880,320 - 94,925,061 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 13 | 96,280,267 - 96,325,008 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 13 | 93,454,960 - 93,499,704 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 13 | 98,924,728 - 98,969,051 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 13 | 98,924,962 - 98,967,735 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 13 | 103,926,344 - 103,971,107 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 13 | 96,377,751 - 96,423,915 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Celera | 13 | 91,921,665 - 91,965,418 (+) | NCBI | | Celera | | | Cytogenetic Map | 13 | q26 | NCBI | | | | |
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Lin9 (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955489 | 430,472 - 491,733 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955489 | 431,063 - 491,729 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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LIN9 (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 1 | 23,228,678 - 23,308,426 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 1 | 23,177,165 - 23,256,899 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 1 | 201,690,431 - 201,770,170 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 1 | 206,684,578 - 206,763,281 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 1 | 206,684,578 - 206,763,796 (-) | Ensembl | panpan1.1 | | panPan2 | |
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LIN9 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 7 | 38,571,890 - 38,647,354 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 7 | 38,575,012 - 38,647,481 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 7 | 38,049,825 - 38,128,788 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 7 | 38,402,126 - 38,481,153 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 7 | 38,401,789 - 38,481,897 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 7 | 38,240,856 - 38,319,816 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 7 | 38,247,787 - 38,326,715 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 7 | 38,518,901 - 38,598,124 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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LIN9 (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 10 | 14,109,768 - 14,184,586 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 10 | 14,109,768 - 14,184,027 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 10 | 15,627,016 - 15,663,184 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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LIN9 (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 25 | 3,450,692 - 3,538,088 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 25 | 3,462,891 - 3,538,077 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666055 | 3,451,488 - 3,537,951 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Lin9 (Heterocephalus glaber - naked mole-rat) |
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