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Gene: LIN9 (lin-9 DREAM MuvB core complex component) Pan paniscus

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Symbol:

LIN9

Name:

lin-9 DREAM MuvB core complex component

RGD ID:

11812623

Description:

ENCODES a protein that exhibits DNA binding (inferred); INVOLVED IN DNA-templated transcription (inferred); regulation of cell cycle (inferred); regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred); transcription repressor complex (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

lin-9 homolog; protein lin-9 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	23,228,678 - 23,308,426 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	23,177,165 - 23,256,899 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	201,690,431 - 201,770,170 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	206,684,578 - 206,763,281 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	206,684,578 - 206,763,796 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

gastrointestinal stromal tumor (ISO)

parathyroid carcinoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA-templated transcription (IEA)

regulation of cell cycle (IEA)

regulation of transcription by RNA polymerase II (IEA)

Cellular Component

nucleoplasm (IEA)

nucleus (IEA)

transcription repressor complex (IEA)

Molecular Function

DNA binding (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

LIN9
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	23,228,678 - 23,308,426 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	23,177,165 - 23,256,899 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	201,690,431 - 201,770,170 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	206,684,578 - 206,763,281 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	206,684,578 - 206,763,796 (-)	Ensembl	panpan1.1		panPan2

LIN9
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	226,231,149 - 226,309,767 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	226,231,149 - 226,309,869 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	226,418,850 - 226,497,468 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	224,485,484 - 224,563,821 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	222,725,595 - 222,803,933	NCBI
Celera	1	199,609,841 - 199,688,109 (-)	NCBI		Celera
Cytogenetic Map	1	q42.12	NCBI
HuRef	1	196,936,105 - 197,014,696 (-)	NCBI		HuRef
CHM1_1	1	227,691,754 - 227,770,370 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	225,419,172 - 225,497,821 (-)	NCBI		T2T-CHM13v2.0

Lin9
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	180,468,715 - 180,518,252 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	180,468,715 - 180,518,259 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	180,641,150 - 180,690,687 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	180,641,150 - 180,690,694 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	182,571,465 - 182,620,818 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	182,478,028 - 182,518,303 (+)	NCBI		MGSCv36	mm8
Celera	1	187,709,835 - 187,752,150 (+)	NCBI		Celera
Cytogenetic Map	1	H4	NCBI
cM Map	1	84.46	NCBI

Lin9
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	94,906,185 - 94,951,541 (+)	NCBI		GRCr8
mRatBN7.2	13	92,374,612 - 92,419,664 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	45,878,685 - 45,880,763 (-)	Ensembl		mRatBN7.2 Ensembl
mRatBN7.2 Ensembl	13	92,374,593 - 92,419,654 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	94,880,320 - 94,925,061 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	96,280,267 - 96,325,008 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	93,454,960 - 93,499,704 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	98,924,728 - 98,969,051 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	98,924,962 - 98,967,735 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	103,926,344 - 103,971,107 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	96,377,751 - 96,423,915 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	13	91,921,665 - 91,965,418 (+)	NCBI		Celera
Cytogenetic Map	13	q26	NCBI

Lin9
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955489	430,472 - 491,733 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955489	431,063 - 491,729 (-)	NCBI	ChiLan1.0	ChiLan1.0

LIN9
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	38,571,890 - 38,647,354 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	38,575,012 - 38,647,481 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	38,049,825 - 38,128,788 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	38,402,126 - 38,481,153 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	38,401,789 - 38,481,897 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	38,240,856 - 38,319,816 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	38,247,787 - 38,326,715 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	38,518,901 - 38,598,124 (+)	NCBI		UU_Cfam_GSD_1.0

Lin9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	51,686,267 - 51,754,210 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936526	2,993,087 - 3,061,030 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936526	2,993,087 - 3,061,024 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LIN9
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	14,109,768 - 14,184,586 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	10	14,109,768 - 14,184,027 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	15,627,016 - 15,663,184 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LIN9
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	3,450,692 - 3,538,088 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	3,462,891 - 3,538,077 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	3,451,488 - 3,537,951 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lin9
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624807	334,788 - 402,739 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003814925	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003814927	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008967802	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055107432	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_057301199	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000036282 ⟹ ENSPPAP00000013609

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	1	206,684,578 - 206,763,281 (-)	Ensembl

Ensembl Acc Id:

ENSPPAT00000036303 ⟹ ENSPPAP00000013630

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	1	206,684,578 - 206,763,220 (-)	Ensembl

Ensembl Acc Id:

ENSPPAT00000036308 ⟹ ENSPPAP00000013635

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	1	206,685,922 - 206,763,796 (-)	Ensembl

RefSeq Acc Id:

XM_003814925 ⟹ XP_003814973

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	23,228,678 - 23,308,426 (+)	NCBI
NHGRI_mPanPan1	1	23,177,166 - 23,256,899 (+)	NCBI
Mhudiblu_PPA_v0	1	201,690,431 - 201,770,169 (-)	NCBI
PanPan1.1	1	206,684,578 - 206,763,235 (-)	NCBI

Sequence:

show sequence

AGTCTCCGCCCCACAATGCACCGCGGCGGGCAGCCTTTGAAAAAGCGGCGCGGCTCGTTCAAGA
TGGCGGAGCTCGACCAGTTGCCTGACGAGAGCTCTTCAGCAAAAGCCCTTGTCAGTTTAAAAGA
AGGAAGCTTATCTAACACGTGGAATGAAAAGTACAGTTCTTTACAGAAAACACCTGTTTGGAAA
GGCAGGAATACAAGCTCTGCTGTGGAAATGCCTTTCAGAAATTCAAAACGAAGTCGACTTTTTT
CTGATGAAGATGATAGGCAAATAAATACAAGGTCACCTAAAAGAAACCAGAGGGTTGCAATGGT
TCCACAGAAATTTACAGCAACAATGTCAACACCAGATAAGAAAGCTTCACAGAAGATTGGTTTT
CGATTACGTAATCTGCTCAAGCTTCCTAAAGCACATAAATGGTGTATATACGAATGGTTCTATT
CAAATATAGATAAACCACTTTTTGAAGGTGATAATGACTTCTGTGTATGTCTAAAGGAATCTTT
TCCTAATTTGAAAACAAGAAAGTTAACAAGAGTAGAATGGGGAAAAATTCGGCGGCTTATGGGA
AAACCACGGAGATGTTCTTCTGCATTTTTTGAGGAAGAGAGATCAGCATTAAAACAGAAACGGC
AGAAAATAAGGCTCTTACAACAAAGGAAAGTTGCAGATGTTTCACAATTCAAAGATCTCCCAGA
TGAAATTCCTTTGCCTCTGGTTATTGGAACGAAAGTTACAGCACGATTACGTGGTGTTCATGAT
GGTTTGTTCACTGGACAAATAGATGCTGTGGATACTCTTAATGCTACTTATAGAGTAACTTTTG
ATAGGACAGGGCTTGGAACCCATACCATCCCTGACTATGAAGTTCTCAGTAATGAACCTCATGA
GACAATGCCAATTGCTGCCTTTGGACAAAAACAGCGGCCTTCTCGATTTTTTATGACCCCACCA
CGGTTACATTATACTCCTCCTCTCCAGTCACCAATTATAGATAATGATCCTTTATTAGGACAGT
CGCCGTGGAGAAGTAAAATTTCTGGCTCTGACACTGAAACATTAGGTGGTTTTCCAGTAGAATT
TCTTATCCAAGTGACCAGATTATCAAAAATTCTCATGATTAAAAAGGAACATATCAAGAAATTA
AGGGAAATGAACACAGAAGCAGAAAAATTGAAATCATATTCCATGCCCATCAGCATTGAATTTC
AGCGGAGATATGCAACAATTGTTCTGGAGCTTGAACAGCTGAACAAGGACCTAAACAAAGTTTT
GCATAAAGTTCAACAGTATTGCTATGAGCTTGCTCCAGACCAGGGGCTCCAGCCTGCAGATCAG
CCAACAGATATGAGACGCAGGTGTGAGGAAGAAGCACAGGAAATTGTTCGGCATGCAAATTCCT
CAACAGGACAGCCCTGCGTTGAAAATGAAAATCTGACAGACTTAATTTCCAGGCTTACAGCTAT
TTTGTTACAAATTAAGTGTCTAGCAGAAGGAGGAGACCTGAATTCCTTTGAATTCAAATCACTT
ACAGACTCATTAAATGATATCAAGAGTACAATAGACGCTTCTAATATCAGTTGCTTTCAGAATA
ATGTAGAAATCCATGTTGCACATATTCAGAGTGGCCTGAGCCAGATGGGAAACTTACATGCCTT
TGCAGCAAATAACACCAACAGAGACTGAGTAAAGATTTCATTATTCCAACTGCACGGGACATTG
TTTTTGAGAAGTTCTTTTCCTTTATATAGGCTTCCAACACCAAATAACCTAACTGCTGGAAAAC
AAGGGAAATTTAAATCTCCAAATAAGGCATTTTAATAGACTGTACTGCTTCTTAAACCAGCATT
GCTGACCAGCATTATATTTATTTTTCTTTTATTATTCAGATGCAGTAGCATTGCTTATGTTACA
TATGTTTATATTCACAAATATTTTTAAACTGAAATATCTGAACATAATATAATTTCGTGGAAGA
ATACATTGACCATTTTTTTTAATGTGCATGAATTCACCGAAACACATGCAGACAACTGCTGCAA
TGGAGAGTATGAAGAAACCTGGTCTTTTTATTCATGTCGGTGGCAGTGTGGAAATTCCATCCAG
AAAATTACAACTCCACTTGATTTAGTTGATCACCATCTCAATCTTCAAAAGATAACATCATGAG
GTGTGGGAAGTCCTAGTTTTAAGGAAACCACTGAAATATAGATGGGAAATGTGGACTTTACAAG
TATATGTTATATATACTTGCAATGTGACATGGTTCTGTAGATCATTTTATAATAATAAATATTT
TAATTTATCATAACTTATATAAAAGAAACCTTTGTTGTTTGTTGAAAGAAAATGAAGGAACGGG
GGAAAAAAGGTGCAAAATGCTAAATTTCTAAAAATGGATTTGGCATGTCTTCCCATCAGTTCAG
GTCAAAAGTGCATTGTTATGAGATTTATTTTAAAAAAAATGATAACACACTATTTTCATATTTT
TTGTTTATTTGCACAACTTTTAAACCAGATTACTGGTTAAAATCCAACAGTACACAATTTATAA
AGTAAAAAGATTTTATAAGGAAAACAAATATAATAACCAGTGCTGTGAAATGCAGAAGAAAGGC
TTGTTTTGGTTGTTTTTCTTTTTTAGGAAAACCCTGCCTAAAATGTTAATCTTGTAAAAAGTAT
GTATTTGGAATTTTCTTCGTTTTAATAGAATATTATAAAGTCAAAATATAAATTTTTTTCAAAT
TTGGAGTTTAAGATATAGCTGTAGAGGTGGTTTTAATTCCTTTAGATGTCTCATAAAATGAGAC
TTTTTATATGTTAATGTATAATAAAACTGAAACAAGATTATTTTCCATTTGAAATTTTTGTATA
GTTTAAAAAGGCTTCCGTATTCTTTGTTGGTATTGTGCCACTGCAGAACTTTAGTGCAGAGTTT
ATATTTAGCTAAACTGTTATGTTAATTAAGAAATGCATAAATCTTCTATTCTTAATATTTGTAA
TTCTAAATAAATTGATCTATGAAAATTA

hide sequence

RefSeq Acc Id:

XM_003814927 ⟹ XP_003814975

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	23,228,678 - 23,308,426 (+)	NCBI
NHGRI_mPanPan1	1	23,177,166 - 23,256,899 (+)	NCBI
Mhudiblu_PPA_v0	1	201,690,431 - 201,770,169 (-)	NCBI
PanPan1.1	1	206,684,578 - 206,763,281 (-)	NCBI

Sequence:

show sequence

GCGCCGCGGGCAGCGAGCTCCGCATTCGAACCTCCCTCGCAAAGACAGTCTCCGCCCCACAATG
CACCGCGGCGGGCAGCCTTTGAAAAAGCGGCGCGGCTCGTTCAAGATGGCGGAGCTCGACCAGT
TGCCTGACGAGAGCTCTTCAGCAAAAGCCCTTGTCAGTTTAAAAGAAGGAAGCTTATCTAACAC
GTGGAATGAAAAGTACAGTTCTTTACAGAAAACACCTGTTTGGAAAGGCAGGAATACAAGCTCT
GCTGTGGAAATGAAATTTACAGCAACAATGTCAACACCAGATAAGAAAGCTTCACAGAAGATTG
GTTTTCGATTACGTAATCTGCTCAAGCTTCCTAAAGCACATAAATGGTGTATATACGAATGGTT
CTATTCAAATATAGATAAACCACTTTTTGAAGGTGATAATGACTTCTGTGTATGTCTAAAGGAA
TCTTTTCCTAATTTGAAAACAAGAAAGTTAACAAGAGTAGAATGGGGAAAAATTCGGCGGCTTA
TGGGAAAACCACGGAGATGTTCTTCTGCATTTTTTGAGGAAGAGAGATCAGCATTAAAACAGAA
ACGGCAGAAAATAAGGCTCTTACAACAAAGGAAAGTTGCAGATGTTTCACAATTCAAAGATCTC
CCAGATGAAATTCCTTTGCCTCTGGTTATTGGAACGAAAGTTACAGCACGATTACGTGGTGTTC
ATGATGGTTTGTTCACTGGACAAATAGATGCTGTGGATACTCTTAATGCTACTTATAGAGTAAC
TTTTGATAGGACAGGGCTTGGAACCCATACCATCCCTGACTATGAAGTTCTCAGTAATGAACCT
CATGAGACAATGCCAATTGCTGCCTTTGGACAAAAACAGCGGCCTTCTCGATTTTTTATGACCC
CACCACGGTTACATTATACTCCTCCTCTCCAGTCACCAATTATAGATAATGATCCTTTATTAGG
ACAGTCGCCGTGGAGAAGTAAAATTTCTGGCTCTGACACTGAAACATTAGGTGGTTTTCCAGTA
GAATTTCTTATCCAAGTGACCAGATTATCAAAAATTCTCATGATTAAAAAGGAACATATCAAGA
AATTAAGGGAAATGAACACAGAAGCAGAAAAATTGAAATCATATTCCATGCCCATCAGCATTGA
ATTTCAGCGGAGATATGCAACAATTGTTCTGGAGCTTGAACAGCTGAACAAGGACCTAAACAAA
GTTTTGCATAAAGTTCAACAGTATTGCTATGAGCTTGCTCCAGACCAGGGGCTCCAGCCTGCAG
ATCAGCCAACAGATATGAGACGCAGGTGTGAGGAAGAAGCACAGGAAATTGTTCGGCATGCAAA
TTCCTCAACAGGACAGCCCTGCGTTGAAAATGAAAATCTGACAGACTTAATTTCCAGGCTTACA
GCTATTTTGTTACAAATTAAGTGTCTAGCAGAAGGAGGAGACCTGAATTCCTTTGAATTCAAAT
CACTTACAGACTCATTAAATGATATCAAGAGTACAATAGACGCTTCTAATATCAGTTGCTTTCA
GAATAATGTAGAAATCCATGTTGCACATATTCAGAGTGGCCTGAGCCAGATGGGAAACTTACAT
GCCTTTGCAGCAAATAACACCAACAGAGACTGAGTAAAGATTTCATTATTCCAACTGCACGGGA
CATTGTTTTTGAGAAGTTCTTTTCCTTTATATAGGCTTCCAACACCAAATAACCTAACTGCTGG
AAAACAAGGGAAATTTAAATCTCCAAATAAGGCATTTTAATAGACTGTACTGCTTCTTAAACCA
GCATTGCTGACCAGCATTATATTTATTTTTCTTTTATTATTCAGATGCAGTAGCATTGCTTATG
TTACATATGTTTATATTCACAAATATTTTTAAACTGAAATATCTGAACATAATATAATTTCGTG
GAAGAATACATTGACCATTTTTTTTAATGTGCATGAATTCACCGAAACACATGCAGACAACTGC
TGCAATGGAGAGTATGAAGAAACCTGGTCTTTTTATTCATGTCGGTGGCAGTGTGGAAATTCCA
TCCAGAAAATTACAACTCCACTTGATTTAGTTGATCACCATCTCAATCTTCAAAAGATAACATC
ATGAGGTGTGGGAAGTCCTAGTTTTAAGGAAACCACTGAAATATAGATGGGAAATGTGGACTTT
ACAAGTATATGTTATATATACTTGCAATGTGACATGGTTCTGTAGATCATTTTATAATAATAAA
TATTTTAATTTATCATAACTTATATAAAAGAAACCTTTGTTGTTTGTTGAAAGAAAATGAAGGA
ACGGGGGAAAAAAGGTGCAAAATGCTAAATTTCTAAAAATGGATTTGGCATGTCTTCCCATCAG
TTCAGGTCAAAAGTGCATTGTTATGAGATTTATTTTAAAAAAAATGATAACACACTATTTTCAT
ATTTTTTGTTTATTTGCACAACTTTTAAACCAGATTACTGGTTAAAATCCAACAGTACACAATT
TATAAAGTAAAAAGATTTTATAAGGAAAACAAATATAATAACCAGTGCTGTGAAATGCAGAAGA
AAGGCTTGTTTTGGTTGTTTTTCTTTTTTAGGAAAACCCTGCCTAAAATGTTAATCTTGTAAAA
AGTATGTATTTGGAATTTTCTTCGTTTTAATAGAATATTATAAAGTCAAAATATAAATTTTTTT
CAAATTTGGAGTTTAAGATATAGCTGTAGAGGTGGTTTTAATTCCTTTAGATGTCTCATAAAAT
GAGACTTTTTATATGTTAATGTATAATAAAACTGAAACAAGATTATTTTCCATTTGAAATTTTT
GTATAGTTTAAAAAGGCTTCCGTATTCTTTGTTGGTATTGTGCCACTGCAGAACTTTAGTGCAG
AGTTTATATTTAGCTAAACTGTTATGTTAATTAAGAAATGCATAAATCTTCTATTCTTAATATT
TGTAATTCTAAATAAATTGATCTATGAAAATTA

hide sequence

RefSeq Acc Id:

XM_008967802 ⟹ XP_008966050

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	23,228,678 - 23,308,426 (+)	NCBI
NHGRI_mPanPan1	1	23,177,166 - 23,256,899 (+)	NCBI
Mhudiblu_PPA_v0	1	201,690,431 - 201,770,170 (-)	NCBI
PanPan1.1	1	206,684,578 - 206,763,209 (-)	NCBI

Sequence:

show sequence

CGGGCAGCCTTTGAAAAAGCGGCGCGGCTCGTTCAAGATGGCGGAGCTCGACCAGTTGCCTGAC
GAGAGCTCTTCAGCAAAAGCCCTTGTCAGTTTAAAAGAAGGAAGCTTATCTAACACGTGGAATG
AAAAGTACAGTTCTTTACAGAAAACACCTGTTTGGAAAGGCAGGAATACAAGCTCTGCTGTGGA
AATGCCTTTCAGAAATTCAAAACGAAGTCGACTTTTTTCTGATGAAGATGATAGGCAAATAAAT
ACAAGGTCACCTAAAAGAAACCAGAGGGTTGCAATGGTTCCACAGAAATTTACAGCAACAATGT
CAACACCAGATAAGAAAGCTTCACAGAAGATTGGTTTTCGATTACGTAATCTGCTCAAGCTTCC
TAAAGCACATAAATGGTGTATATACGAATGGTTCTATTCAAATATAGATAAACCACTTTTTGAA
GGTGATAATGACTTCTGTGTATGTCTAAAGGAATCTTTTCCTAATTTGAAAACAAGAAAGTTAA
CAAGAGTAGAATGGGGAAAAATTCGGCGGCTTATGGGAAAACCACGGAGATGTTCTTCTGCATT
TTTTGAGGAAGAGAGATCAGCATTAAAACAGAAACGGCAGAAAATAAGGCTCTTACAACAAAGG
AAAGTTGCAGATGTTTCACAATTCAAAGATCTCCCAGATGAAATTCCTTTGCCTCTGGTTATTG
GAACGAAAGTTACAGCACGATTACGTGGTGTTCATGATGGTTTGTTCACTGGACAAATAGATGC
TGTGGATACTCTTAATGCTACTTATAGAGTAACTTTTGATAGGACAGGGCTTGGAACCCATACC
ATCCCTGACTATGAAGTTCTCAGTAATGAACCTCATGAGACAATGCCAATTGCTGCCTTTGGAC
AAAAACAGCGGCCTTCTCGATTTTTTATGACCCCACCACGGTTACATTATACTCCTCCTCTCCA
GTCACCAATTATAACCAGATTATCAAAAATTCTCATGATTAAAAAGGAACATATCAAGAAATTA
AGGGAAATGAACACAGAAGCAGAAAAATTGAAATCATATTCCATGCCCATCAGCATTGAATTTC
AGCGGAGATATGCAACAATTGTTCTGGAGCTTGAACAGCTGAACAAGGACCTAAACAAAGTTTT
GCATAAAGTTCAACAGTATTGCTATGAGCTTGCTCCAGACCAGGGGCTCCAGCCTGCAGATCAG
CCAACAGATATGAGACGCAGGTGTGAGGAAGAAGCACAGGAAATTGTTCGGCATGCAAATTCCT
CAACAGGACAGCCCTGCGTTGAAAATGAAAATCTGACAGACTTAATTTCCAGGCTTACAGCTAT
TTTGTTACAAATTAAGTGTCTAGCAGAAGGAGGAGACCTGAATTCCTTTGAATTCAAATCACTT
ACAGACTCATTAAATGATATCAAGAGTACAATAGACGCTTCTAATATCAGTTGCTTTCAGAATA
ATGTAGAAATCCATGTTGCACATATTCAGAGTGGCCTGAGCCAGATGGGAAACTTACATGCCTT
TGCAGCAAATAACACCAACAGAGACTGAGTAAAGATTTCATTATTCCAACTGCACGGGACATTG
TTTTTGAGAAGTTCTTTTCCTTTATATAGGCTTCCAACACCAAATAACCTAACTGCTGGAAAAC
AAGGGAAATTTAAATCTCCAAATAAGGCATTTTAATAGACTGTACTGCTTCTTAAACCAGCATT
GCTGACCAGCATTATATTTATTTTTCTTTTATTATTCAGATGCAGTAGCATTGCTTATGTTACA
TATGTTTATATTCACAAATATTTTTAAACTGAAATATCTGAACATAATATAATTTCGTGGAAGA
ATACATTGACCATTTTTTTTAATGTGCATGAATTCACCGAAACACATGCAGACAACTGCTGCAA
TGGAGAGTATGAAGAAACCTGGTCTTTTTATTCATGTCGGTGGCAGTGTGGAAATTCCATCCAG
AAAATTACAACTCCACTTGATTTAGTTGATCACCATCTCAATCTTCAAAAGATAACATCATGAG
GTGTGGGAAGTCCTAGTTTTAAGGAAACCACTGAAATATAGATGGGAAATGTGGACTTTACAAG
TATATGTTATATATACTTGCAATGTGACATGGTTCTGTAGATCATTTTATAATAATAAATATTT
TAATTTATCATAACTTATATAAAAGAAACCTTTGTTGTTTGTTGAAAGAAAATGAAGGAACGGG
GGAAAAAAGGTGCAAAATGCTAAATTTCTAAAAATGGATTTGGCATGTCTTCCCATCAGTTCAG
GTCAAAAGTGCATTGTTATGAGATTTATTTTAAAAAAAATGATAACACACTATTTTCATATTTT
TTGTTTATTTGCACAACTTTTAAACCAGATTACTGGTTAAAATCCAACAGTACACAATTTATAA
AGTAAAAAGATTTTATAAGGAAAACAAATATAATAACCAGTGCTGTGAAATGCAGAAGAAAGGC
TTGTTTTGGTTGTTTTTCTTTTTTAGGAAAACCCTGCCTAAAATGTTAATCTTGTAAAAAGTAT
GTATTTGGAATTTTCTTCGTTTTAATAGAATATTATAAAGTCAAAATATAAATTTTTTTCAAAT
TTGGAGTTTAAGATATAGCTGTAGAGGTGGTTTTAATTCCTTTAGATGTCTCATAAAATGAGAC
TTTTTATATGTTAATGTATAATAAAACTGAAACAAGATTATTTTCCATTTGAAATTTTTGTATA
GTTTAAAAAGGCTTCCGTATTCTTTGTTGGTATTGTGCCACTGCAGAACTTTAGTGCAGAGTTT
ATATTTAGCTAAACTGTTATGTTAATTAAGAAATGCATAAATCTTCTATTCTTAATATTTGTAA
TTCTAAATAAATTGATCTATGAAAATTA

hide sequence

RefSeq Acc Id:

XM_055107432 ⟹ XP_054963407

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	23,228,678 - 23,308,426 (+)	NCBI
NHGRI_mPanPan1	1	23,177,165 - 23,256,899 (+)	NCBI

RefSeq Acc Id:

XM_057301199 ⟹ XP_057157182

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	23,228,678 - 23,308,426 (+)	NCBI
NHGRI_mPanPan1	1	23,177,166 - 23,256,899 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_003814973	(Get FASTA)	NCBI Sequence Viewer
	XP_003814975	(Get FASTA)	NCBI Sequence Viewer
	XP_008966050	(Get FASTA)	NCBI Sequence Viewer
	XP_054963407	(Get FASTA)	NCBI Sequence Viewer
	XP_057157182	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000013609.1
	ENSPPAP00000013630.1
	ENSPPAP00000013635.1

RefSeq Acc Id:

XP_003814975 ⟸ XM_003814927

- Peptide Label:

isoform X3

- Sequence:

show sequence

MHRGGQPLKKRRGSFKMAELDQLPDESSSAKALVSLKEGSLSNTWNEKYSSLQKTPVWKGRNTS
SAVEMKFTATMSTPDKKASQKIGFRLRNLLKLPKAHKWCIYEWFYSNIDKPLFEGDNDFCVCLK
ESFPNLKTRKLTRVEWGKIRRLMGKPRRCSSAFFEEERSALKQKRQKIRLLQQRKVADVSQFKD
LPDEIPLPLVIGTKVTARLRGVHDGLFTGQIDAVDTLNATYRVTFDRTGLGTHTIPDYEVLSNE
PHETMPIAAFGQKQRPSRFFMTPPRLHYTPPLQSPIIDNDPLLGQSPWRSKISGSDTETLGGFP
VEFLIQVTRLSKILMIKKEHIKKLREMNTEAEKLKSYSMPISIEFQRRYATIVLELEQLNKDLN
KVLHKVQQYCYELAPDQGLQPADQPTDMRRRCEEEAQEIVRHANSSTGQPCVENENLTDLISRL
TAILLQIKCLAEGGDLNSFEFKSLTDSLNDIKSTIDASNISCFQNNVEIHVAHIQSGLSQMGNL
HAFAANNTNRD

hide sequence

RefSeq Acc Id:	XP_003814973 ⟸ XM_003814925
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9A8N5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MHRGGQPLKKRRGSFKMAELDQLPDESSSAKALVSLKEGSLSNTWNEKYSSLQKTPVWKGRNTS SAVEMPFRNSKRSRLFSDEDDRQINTRSPKRNQRVAMVPQKFTATMSTPDKKASQKIGFRLRNL LKLPKAHKWCIYEWFYSNIDKPLFEGDNDFCVCLKESFPNLKTRKLTRVEWGKIRRLMGKPRRC SSAFFEEERSALKQKRQKIRLLQQRKVADVSQFKDLPDEIPLPLVIGTKVTARLRGVHDGLFTG QIDAVDTLNATYRVTFDRTGLGTHTIPDYEVLSNEPHETMPIAAFGQKQRPSRFFMTPPRLHYT PPLQSPIIDNDPLLGQSPWRSKISGSDTETLGGFPVEFLIQVTRLSKILMIKKEHIKKLREMNT EAEKLKSYSMPISIEFQRRYATIVLELEQLNKDLNKVLHKVQQYCYELAPDQGLQPADQPTDMR RRCEEEAQEIVRHANSSTGQPCVENENLTDLISRLTAILLQIKCLAEGGDLNSFEFKSLTDSLN DIKSTIDASNISCFQNNVEIHVAHIQSGLSQMGNLHAFAANNTNRD hide sequence

RefSeq Acc Id:

XP_008966050 ⟸ XM_008967802

- Peptide Label:

isoform X2

- Sequence:

show sequence

MAELDQLPDESSSAKALVSLKEGSLSNTWNEKYSSLQKTPVWKGRNTSSAVEMPFRNSKRSRLF
SDEDDRQINTRSPKRNQRVAMVPQKFTATMSTPDKKASQKIGFRLRNLLKLPKAHKWCIYEWFY
SNIDKPLFEGDNDFCVCLKESFPNLKTRKLTRVEWGKIRRLMGKPRRCSSAFFEEERSALKQKR
QKIRLLQQRKVADVSQFKDLPDEIPLPLVIGTKVTARLRGVHDGLFTGQIDAVDTLNATYRVTF
DRTGLGTHTIPDYEVLSNEPHETMPIAAFGQKQRPSRFFMTPPRLHYTPPLQSPIITRLSKILM
IKKEHIKKLREMNTEAEKLKSYSMPISIEFQRRYATIVLELEQLNKDLNKVLHKVQQYCYELAP
DQGLQPADQPTDMRRRCEEEAQEIVRHANSSTGQPCVENENLTDLISRLTAILLQIKCLAEGGD
LNSFEFKSLTDSLNDIKSTIDASNISCFQNNVEIHVAHIQSGLSQMGNLHAFAANNTNRD

hide sequence

Ensembl Acc Id:

ENSPPAP00000013609 ⟸ ENSPPAT00000036282

Ensembl Acc Id:

ENSPPAP00000013635 ⟸ ENSPPAT00000036308

Ensembl Acc Id:

ENSPPAP00000013630 ⟸ ENSPPAT00000036303

RefSeq Acc Id:	XP_054963407 ⟸ XM_055107432
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_057157182 ⟸ XM_057301199
- Peptide Label:	isoform X5
- UniProtKB:	A0A2R9A8N5 (UniProtKB/TrEMBL)

Protein Domains

DIRP

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000029947	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000036282.1	UniProtKB/TrEMBL
	ENSPPAT00000036303.1	UniProtKB/TrEMBL
	ENSPPAT00000036308.1	UniProtKB/TrEMBL
InterPro	DIRP	UniProtKB/TrEMBL
	LIN-9/ALY1	UniProtKB/TrEMBL
	LIN9_C	UniProtKB/TrEMBL
KEGG Report	pps:100973156	UniProtKB/TrEMBL
NCBI Gene	LIN9	ENTREZGENE
PANTHER	PROTEIN LIN-9 HOMOLOG	UniProtKB/TrEMBL
	PTHR21689	UniProtKB/TrEMBL
Pfam	DIRP	UniProtKB/TrEMBL
	LIN9_C	UniProtKB/TrEMBL
SMART	DIRP	UniProtKB/TrEMBL
UniProt	A0A2R9A8K6_PANPA	UniProtKB/TrEMBL
	A0A2R9A8M9_PANPA	UniProtKB/TrEMBL
	A0A2R9A8N5	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar