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Gene: Tspoap1 (TSPO associated protein 1) Ictidomys tridecemlineatus

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Symbol:

Tspoap1

Name:

TSPO associated protein 1

RGD ID:

12676649

Description:

ENCODES a protein that exhibits benzodiazepine receptor binding (inferred); voltage-gated calcium channel activity involved in regulation of presynaptic cytosolic calcium levels (inferred); INVOLVED IN regulation of neurotransmitter secretion (inferred); regulation of presynaptic cytosolic calcium ion concentration (inferred); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); COVID-19 (ortholog); dystonia (ortholog); FOUND IN calyx of Held (inferred); cytoplasm (inferred); glutamatergic synapse (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

benzodiazapine receptor (peripheral) associated protein 1; peripheral-type benzodiazepine receptor-associated protein 1; TSPO associated protein 1, transcript variant X1; TSPO associated protein 1, transcript variant X2; TSPO associated protein 1, transcript variant X3; TSPO associated protein 1, transcript variant X4; TSPO associated protein 1, transcript variant X5

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	32,281,872 - 32,308,501 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936490	4,766,521 - 4,793,361 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936490	4,766,564 - 4,793,174 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tspoap1	Squirrel	COVID-19		ISO	TSPOAP1 (Homo sapiens)	9068941	mRNA:decreased expression:peripheral blood mononuclear cell (human)	RGD	PMID:32228226 and REF_RGD_ID:28912744

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tspoap1	Squirrel	Bardet-Biedl syndrome		ISO	TSPOAP1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Bardet-Biedl syndrome	ClinVar	PMID:25741868
Tspoap1	Squirrel	dystonia		ISO	TSPOAP1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: TSPOAP1-related Dystonia	ClinVar
Tspoap1	Squirrel	dystonia 22, adult-onset		ISO	TSPOAP1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Dystonia 22 and adult-onset	ClinVar	PMID:25741868 and PMID:33539324
Tspoap1	Squirrel	dystonia 22, juvenile-onset		ISO	TSPOAP1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Dystonia 22 and juvenile-onset	ClinVar	PMID:33539324
Tspoap1	Squirrel	hereditary breast ovarian cancer syndrome		ISO	TSPOAP1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Breast-ovarian cancer more ...	ClinVar	PMID:38922859
Tspoap1	Squirrel	intellectual disability		ISO	TSPOAP1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Intellectual disability	ClinVar	PMID:25741868 more ...
Tspoap1	Squirrel	Joubert syndrome 1		ISO	TSPOAP1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Familial aplasia of the vermis	ClinVar	PMID:28492532
Tspoap1	Squirrel	Neurodevelopmental Disorders		ISO	TSPOAP1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Neurodevelopmental disorder	ClinVar	PMID:25741868 and PMID:33539324

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tspoap1	Squirrel	dystonia 22, adult-onset		ISO	TSPOAP1 (Homo sapiens)	7240710		OMIM
Tspoap1	Squirrel	dystonia 22, juvenile-onset		ISO	TSPOAP1 (Homo sapiens)	7240710		OMIM

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tspoap1	Squirrel	regulation of neurotransmitter secretion	involved_in	IEA	UniProtKB:O95153 and ensembl:ENSP00000345824	150520179		Ensembl	GO_REF:0000107
Tspoap1	Squirrel	regulation of presynaptic cytosolic calcium ion concentration	involved_in	IEA	GO:0099626	150520179		GOC	GO_REF:0000108

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tspoap1	Squirrel	calyx of Held	is_active_in	IEA	UniProtKB:Q7TNF8 and ensembl:ENSMUSP00000048063	150520179		Ensembl	GO_REF:0000107
Tspoap1	Squirrel	cytoplasm	located_in	IEA	UniProtKB:O95153 and ensembl:ENSP00000345824	150520179		Ensembl	GO_REF:0000107
Tspoap1	Squirrel	glutamatergic synapse	is_active_in	IEA	UniProtKB:Q7TNF8 and ensembl:ENSMUSP00000048063	150520179		Ensembl	GO_REF:0000107
Tspoap1	Squirrel	mitochondrion	located_in	IEA	UniProtKB:O95153 and ensembl:ENSP00000345824	150520179		Ensembl	GO_REF:0000107
Tspoap1	Squirrel	mitochondrion	located_in	IEA	PANTHER:PTN000369473	150520179		TreeGrafter	GO_REF:0000118

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tspoap1	Squirrel	benzodiazepine receptor binding	enables	IEA	UniProtKB:O95153 and ensembl:ENSP00000345824	150520179		Ensembl	GO_REF:0000107
Tspoap1	Squirrel	benzodiazepine receptor binding	enables	IEA	PANTHER:PTN000369473	150520179		TreeGrafter	GO_REF:0000118
Tspoap1	Squirrel	protein binding	enables	ISO	UniProtKB:Q9H013	9068941	PMID:25825872	IntAct	PMID:25825872
Tspoap1	Squirrel	protein binding	enables	ISO	UniProtKB:O00555	9068941	PMID:21078624 and PMID:33539324	IntAct	PMID:21078624 and PMID:33539324
Tspoap1	Squirrel	voltage-gated calcium channel activity involved in regulation of presynaptic cytosolic calcium levels	enables	IEA	UniProtKB:Q7TNF8 and ensembl:ENSMUSP00000048063	150520179		Ensembl	GO_REF:0000107

PMID:22301074	PMID:30032202

Tspoap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	32,281,872 - 32,308,501 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936490	4,766,521 - 4,793,361 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936490	4,766,564 - 4,793,174 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TSPOAP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	58,301,231 - 58,328,795 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	58,301,228 - 58,328,795 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	56,378,592 - 56,406,156 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	53,733,591 - 53,760,477 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	53,733,594 - 53,760,477	NCBI
Celera	17	52,840,368 - 52,867,932 (-)	NCBI		Celera
Cytogenetic Map	17	q22	NCBI
HuRef	17	51,739,174 - 51,766,689 (-)	NCBI		HuRef
CHM1_1	17	56,443,607 - 56,471,171 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	59,169,111 - 59,196,675 (-)	NCBI		T2T-CHM13v2.0

Tspoap1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	87,649,022 - 87,676,754 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	87,651,367 - 87,676,754 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	87,758,194 - 87,785,928 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	87,760,541 - 87,785,928 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	87,574,043 - 87,599,430 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	87,593,288 - 87,602,113 (+)	NCBI		MGSCv36	mm8
Celera	11	97,356,384 - 97,381,737 (+)	NCBI		Celera
Cytogenetic Map	11	C	NCBI
cM Map	11	52.21	NCBI

Tspoap1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	73,053,414 - 73,083,640 (+)	NCBI		GRCr8
mRatBN7.2	10	72,554,220 - 72,586,402 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	72,560,980 - 72,586,412 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	10	75,053,956 - 75,079,615 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	75,055,020 - 75,076,434 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	75,022,773 - 75,048,322 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	76,053,461 - 76,074,635 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	76,067,993 - 76,091,091 (+)	NCBI
Celera	10	71,474,298 - 71,499,715 (+)	NCBI		Celera
Cytogenetic Map	10	q26	NCBI

Tspoap1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955451	4,707,458 - 4,730,257 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955451	4,707,440 - 4,733,179 (+)	NCBI	ChiLan1.0	ChiLan1.0

TSPOAP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	74,472,465 - 74,499,871 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	79,283,639 - 79,311,079 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	52,376,707 - 52,404,160 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	57,232,244 - 57,259,669 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	57,232,244 - 57,259,669 (-)	Ensembl	panpan1.1		panPan2

TSPOAP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	32,949,912 - 32,972,830 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	32,950,906 - 32,973,982 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	32,186,983 - 32,211,808 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	33,756,622 - 33,781,455 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	33,756,622 - 33,780,594 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	32,542,761 - 32,567,618 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	32,826,233 - 32,851,116 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	32,919,705 - 32,944,540 (-)	NCBI		UU_Cfam_GSD_1.0

TSPOAP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	34,578,704 - 34,605,888 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	34,578,698 - 34,606,623 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	36,206,776 - 36,234,699 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TSPOAP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	35,071,519 - 35,099,174 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	35,072,385 - 35,096,057 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	5,886,290 - 5,914,097 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tspoap1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624871	140,612 - 165,411 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624871	139,513 - 165,564 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_005321582	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021724083	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021724084	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021724085	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021724086	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040269030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040269031	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040269032	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040269033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000020180 ⟹ ENSSTOP00000021805

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936490	4,767,435 - 4,790,270 (+)	Ensembl

Ensembl Acc Id:

ENSSTOT00000033918 ⟹ ENSSTOP00000030141

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936490	4,766,521 - 4,793,361 (+)	Ensembl

Ensembl Acc Id:

ENSSTOT00000040121 ⟹ ENSSTOP00000030304

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936490	4,766,521 - 4,793,361 (+)	Ensembl

RefSeq Acc Id:

XM_005321582 ⟹ XP_005321639

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	32,282,902 - 32,308,500 (-)	NCBI
SpeTri2.0	NW_004936490	4,766,564 - 4,793,174 (+)	NCBI

Sequence:

show sequence

TCCCCCTCATTCTGAGGCTCAGCCTTCCTCCGCGCCCACCATCTCCGGGCTCCGGGACTGTAAGGGACCCCTGCAGTCCCCCGAGCTGAGGCTAGCAGGGACAGAGACTATGAGGCAAGCAGCCCATC
GACCCAGGCCTCCTTAGGACCAGCCCCGCCACCCAGCAAGCGAGTGAGCAGCAGCAGAGAGAGGAGCGGAGATAAAAGACCACAAGGAACCACTGGGGATCACCCCCAACAGCTCCTGAGGACCCTAG
CCAGGCTGAGGGGTCATGATGGATGACCAGACTCACAGATGCTGACAGCCACACACCGATACCGATGCACGCAGCTGCACAAAACTGACACACTCAGATACAACCAGTGACAGCATCACACATTGCCA
CAGCCCTGCAATACAGACACCCCCACACGCAGAAACAACTGGCAACTCTGTAACAGGCACAGACAGTGACATACAGCACCACACTCTTCAACACACACAAGTGGGGGCACCCATCCTCCAAACACACA
CAAGATAGCATTGACCTGCAGGGGACAGACCTGGAGACACACACACGCATACCCTCACCCAGGCACTGCTGGTGGTGGCCTCGGCACATCCTCCCCACCCCCACAGGGACACCCTCACCTCCCCATAT
ACCCGAGCACTCACACACAACCACCAGCCAACATACCCCCAGCTCCAGCTCTGGCAGCACTGACGCCTTCTGCAGCCTCCTTCGCGGGTGGGGAAGGGCTCAGCCAACCTTGGATGGAGCTTCGGTGA
AGCCAAGAGCTCAGAGGGGAAGGGTCTAGCTTGGCATGACCATTGAAAGTCCCCTCACCTGGCTGGGTGATGTTCCCTGGCCTAGGTTCTGGGGTTCCTTGGCAGTACCATGGAGCAACTGACAACCC
TCCCTCAGCCTGGGGACCCAGGAGCCATGGAACCCTGGGCACTGCCCGCCTGGCAGAGCTGGACTCCGGGCCAGGGGGGCGAGCCTGGAGACAGAGCCCCAAGCATTGCTGACACTCCGACAGCTTTG
CAGGTTGGAGAACTGAGGCCGGAGGAGAGCTGCGAGCCTGAGGGAGCCCAGAGCCCCAGGCCCATGGGGGGCATTGACCCTGAAGGAGCAGAGGCTGGGCTGCCCAGCCTGGGGCAGCAAGCAGTGAT
CTCTGGTCGTGGTTGTCTGAGGCTGAAGGATGAGGATGTGGAGGCTTTGACTAAGGCCAAGGTGAACATGGGCTTTGGTGACAGACCCAATCTGGAGCTCCTGAGGGCCCTGGGTGAGCTGCAGCAGC
GCTGTGCCATCCTTAAGGAGGAAAACCAGATGCTGAGAAAGAGCAGCTTCCCCGAGACAGAGGAGAAGGTGCGGAGGCTGAAGCGGAAGAACGCAGAACTGGCGGTCATTGCCAAGCGCCTGGAGGAG
AGGGCCCGGAAGCTCCAGGAAACAAACCTGAGGGTGGTAAGTGCTCCCGTGCCTGGACCAGGGGCCAGCTTGGAGTTTTGCCGGAAGGCCCTAGCCCGCCAGCGAGCCCGGGATCTCAGTGACACAGC
CAGTGCACTGCTGGCCAAGGACAAGCAGATTGCTGCCTTGCAGCGGGAGTGCAGGGAGCTGCAGGCCAGGCTCACTCTGGTGGGAAAGGAGGGTCCCCAGTGGCTCCACGTGCGGGACTTCGACCGGT
TGCTGCGCGAGTCCCAGCGGGAGGTGCTGCGGCTGCAGAGACAGATCGCCCTGCGCAACCAGCAGGAGCCGCCCCCGCCACCCCGGCCCCCGGGCTCTACTGCCCCGGCTAGAGCAGGGGCGCCAGCC
CCGGGGGCTCCGGGAGAGGCCACACCTCAGGAGGATGTGGAGAGCCCACCCGTGGTCCTAGGGGAGCCTGAGAAACAGCCAAGGGTGCAGCAGCTGGAATCTGAGCTCAGCAAGAAGCGGAAGAAATG
CGAAAGTCTGGAGCAGGAAGCCCGGAAAAAGCAGAGGCGATGTGAGGAGCTGGAACTGCAGCTAAGAGAAGCCCAGAATGAGAATGCCCGCCTGGTGGAGGAGAACTCTCGGCTCAGTGGGAGAGCCT
CAGAGAAGGAGCAGGTTGAGTGGGAGAATGTGGAGTTGAGGGGCCAGCTCCTGGGGGTGACGCAGGAGAGGGACTCAGCCCTTCAAAAGAGCCAGGGCCTGCAAAGCAAGCTGGAGAGCCTGGAGCAG
GTGCTGAAGCACATGCGGGAGGTGGCCCAGCGGCGGCAGCAGCTGGAGGTGGAGCATGAGCAGGCTCGGCTCAGCCTGCGGGAGAAGCAAGAGGAGGTTCGACGGCTGCAGCAGGCCCAGGCAGAAGC
CAAGAGGGAACATGAAGGGGCTGTCCAGCTGCTGGAGTCCACCTTGGATTCCATGCAGGCCCGGGTTCGAGAGCTCGAGGAGCAGTGCCGCAGCCAGACGGAGCGTTTCAGCCTCCTGGCTCAGGAGC
TCCAGGCTTTTCGTCTGCACCCAGGCCCCTTGGATCTGCTCACTTCTGCCCTGGGCTGCAGTGCCCTGGGGGACCACCCACCACCCCCCTGCTGCTGCTCTACCCCCCAGCCCTGCCGGGGGTCTGGC
CCCAAAGACCTTGACCTCCCGCCGGGCTCACCAGGGCGCTGCACCCAAAAGTCTTCCGAGCCTGCCCCTGCCACCCTTACTGGGGTCCCTCGACGGACAGCCAAGAAGGCAGAGTCTCTCTCTAACTC
CTCTCGCTCCGAGTCCATCCACAACAGCCCCAAGTCATGCCCTACACCAGAGGTGGACACAGCCAGTGAGGTGGAGGAGCTAGAGGTGGACAGTGTGTCCCAGCTCCCAGCAGCCCCGGAGGGCAACC
CAGGAACAGCCAGGATCCAGGTCTTCCTAGCTCGCTATAGCTACAATCCCTTTGAGGGTCCCAACGAGAATCCAGAGGCAGAACTTCCCCTGACAGCTGGAGAGTACATTTACATCTATGGCAACATG
GACGAGGATGGATTTTTTGAAGGGGAGCTCATGGATGGCCGCAGGGGCCTGGTCCCTTCCAATTTTGTAGAGCGTGTGTCTGATGACGACCTCCTGACCTCTCTCCCTCCGGAGTTGGCCGATTTGTC
CCACAGCTCAGGCCCTGAACTCAGTTTCCTGAGCGGAGGTGGGGGTGGCAGCAGTAGCGGGGGCCAGAGCAGCGGGGGACGTAGCCAGCCCAGACCCGAGGAGGATGCCGGGGATGAGCTCAGTCTGA
GCCCCCCACCGGAGGGCCTGGGCGAGCCTCCAGCTGTGCCTTATCCCCGCCATCTGGTGGTCCTCAAGCAGCTGGCCCACAGTGTGGTGCTGGCCTGGGAGCTGCCTCCTGAACGTGTGGAACTACGT
GGCTTCCATATCAGCGTGAACGGGGAGCTGCGTCAGGCTCTGGGGCCCGGGGCACCTCCCAAGGCTGTGCTTGAGAACTTGGACTTGCAGGCCGGGCCCCTCCATGTTTCTGTCCAAGCCCTGACCAG
CAGGGGCAGTTCCGACCCTCTGCGCTGTTGCTTGGCCCTGGGTGCTCGGGCTGGGGTGGTACCTAGCCAGCTGCGGGTCCATCGGTTGACAGCCACGTCCGCTGAGATCACCTGGGTGCCCGGCAATA
GCAACTTGGCCCATGCCATCTACCTCAATGGGGAAGAGTGCCCATCTGCCCGCCCCAGCACCTACTGGGCCACCTTCTGCCACCTGCGGCCTGGCACACTGTATCAGGCCCGAGTGGAGGCTCAGCTC
CCATCCCGAGGGTCCTGGGAACCAGGCTGGGAGAAGCCAGACCAGCGGGCTGCCACCCTGCAGTTCACCACGCTCCCAGCAGGCCCTCCTGATGCCCCGCTGGATGTACAGATTGAGCCAGGGCCCTC
CCCTGGAATCTTGATCATTAGTTGGCTCCCAGTCACCATCGATGCTGCTGGCACCTCCAATGGCGTCCGAGTCACAGGCTATGCCATCTATGCTGATGGGCAGAAGATCATGGAGGTGGCGTCACCCA
CAGCCGGCAGCGTGCTGGTGGAGTTGTCCCAGCTGCAGCTGCTCCAGGTGTGCCACAAGGTGGTTGTGCGGACCATGTCGCCCCACGGAGAGTCGGCCGACTCCATTCCGGCCCCTATTGCTCCAGCC
CTGACTCCAGCCTGCTTGCCAGCCAGGGTCTCCTGCCCCTCACCACGACCAAGCCCAGAGGCCAGAACACCCCTTGCTCCAGCCTCCCCAGGGCCTGGGGACCCCAGCTCTCCCCTCTGGTGTCCTGC
CCCCCATGGAACTCAAGATCCCCCAGGAGGCCCCCCAGCAAGCCCTTCCAGAGAGATGCCAAAAGGACCCCAGGAGGAACCACCAGCCCCTTGCTCCCAGGAGGAGGCTGGGGCAGCTGTCCTGTGTG
CCTCAGAGGAGAAGAGGGCCAGCGAGCCAACCCTGGGGGAAGGAGGCCCTGGTCCCGTAGCTTTCTCCCTGGCTGAGCAGGAGGCCGAGTGGACGGCAGGAGAGGCCAGCTCCACAGCCTACTCCACT
CAGGCAACACCGGCCGAGAGGATGCCAAATACTGAGACCTGCTGCGGAGGAGATCCCGGGCCAGGACTGAGACCCAGGGCTGAGAAAGAGGACATGGCAGAGCTTGGGGTTCGCCTAGTGAACTCCCT
TGTGGATCATGGCCGTAACTCAGACCTGTCAGACATCCAGGAGGAGGAGGAAGAGGAGGAGGAGGATTTGGAGCTGGGTTCTAGGACCTGCTCTTTCCAGAAGCAGGTTGCTGGCAACAACACCAGGG
AGAATGGGGCCAAGTCCCAGCCTGACCTCTTTTGTGAGACTGACAGCGATGAGGAGATCTTGGAGCAGATCCTGGAGCTGCCCCTCCAGCAGTTCTGCAGCAAGAAGCTCTTTAGCATCCCCGAAGAG
GAGGAAGAGGAGGACGAGGACGACGAAGGGAAGCCAGGGGCAGGCTGTCCTTCCCAAGACCCTGGCCCACCTGAACCTGCATTGCTGGGGCTGGGCTGTGACAGGGGTCAGCCCCAAGGACCTGGCCT
GTGTCCCCTGTCTCCTGAGCCCTCCAGGGCCAGGGACTACCTGGAGGATCAATCCGGACTAGTCAGTGGAAGCTGCCGGAGGAGAGGAGGTAGCTCCCCAGAGAAGCCCCTAAACCGCCGGCGACCTC
CAGACCCCCGAGAACACTGCAGTCGGCTTCTCAGCAATGGCGGCGGGCCCCAGGCCTCGGCACGTCCAGGCCTCCCCCGGGACAGGAGTGTCCTCCCTGTGATTGAGGGCACCAGGAGTGGTGTAGAG
GCTGGTGGGCGAGGGCGATTGGGCCCTTCCCGGAGGTGCCACCGCGGCCGGGCCCCAGAATCTGGACTGTCCAGCTGCCTCTCCCCGAAGTGCTTGGAAATCAGCATTGAATACGATTCTGAGGACGA
GCAGGAAGCAGGCAGCGGGGGCATCAGCATCACCAGCTCCTGTTACCCGGCAGATGGGGAGGCCTGGGGCACAGCACCTATAGCAAGGCCCAGAGGGCCTCTGAAGGTCAATTCAGGCCCCCATCCCT
CCCCACGCCTCCCAGCCTGGGAGAAAGGGGAGCCAGAGCGGAGAGGGCGCAGTGCGACTGGCAGAGCCAAGGAGCCATCCTCCCGGACAACGGAGGCTGGCGAGCCCAGAGGGCAGGATTGCTCTGGG
CGGAGGGGACCCCAGAAGAGAGGGGCCCGGGTGCCCAGGCCAGGTGCCACTGACCTGGCTCCACCGAGGGGCCCGCCAGAAGCACTGGACCTACCTGTCAGGCTCTTTGTGGCTCTGTTTGACTATGA
CCCCGTGTCCATGTCACCCAACCCTGACGCTGGCGAAGAGGAGCTCCCTTTCCGGGAGGGCCAGATCCTGAAGGTGTTTGGGGACAAGGATGCCGATGGCTTCTACCAGGGTGAATGTGGGGGCCGGA
TGGGCTACATCCCCTGCAACATGGTGGCTGAGGTGGCTGTGGACAGTCCTGCAGGGAGACAGCAGCTACTCCAGCGGGGTTATTTATCTCCAGATGTTGTCCTTGAGGGCTCAGGGAACGGTCCCTTT
GTGTACTCTACAGCCCGCACACCTGGGCCTCCTCCCAAGCCCCGCCGCTCCAAGAAAGCAGATTCAGAAGGCCCTGTCCAGTCCTGTCCAGGCCCCTCCAAGCTGATTCCCTCTGCGGACCTGAAAGC
TCCCCGCCCCATGGTGGCTGCATTTGACTACGACCCCCGGGAGAACTCCCCCAACATGGACGTGGAGGCAGAGCTGCCCTTCAGGGCCGGGGACGTCATCACCGTGTTTGGGAGCATGGATGATGATG
GCTTCTACTATGGGGAACTGAACGGACAAAGGGGCCTAGTTCCATCCAACTTCCTGGAGGGACCTGGGCCTGAAGCAGGCAGCCCAGATAAGGAGCCTGGGATTCCCCAGGCCGAGAGTCAGAGAATG
AGGAGGAGAAGAGTCCAGTGCTAGATGGAAATAGATATATGTAGAGAGAGCAACATGACTGGGTCAGCATGACACAAGGGCCTCCAGTGCCCCCAGGCTGGCATCGTGCCCCTAGCCCTGGAAGCCCC
TCCAGGACTGAACTGGGGGAGCCCCAGGGCACAATTGAGAAGGTATGGGGTCTCCTCTCCAAAGGGAAGCAGCTCCTCAGGAAACTGGGCTCTGGAAAGAAGGAGTGAAGCTGTGGCCCATCCTGCAG
GCAGAAGCGGACCCCAGAGATACCCAGGAAACTGTCCTGGCTGGGCAGGGAGGCCCCAGCACTCCCATTCCCCGACTGAACACTGGATGGGAATCAGAGAGACTGGGCAAAGGTGGGAGCTAGACGGG
TCCTCACGGGGGGAGCCCTCCAGATGGGCTCCTTCCTCTTCCAGGAGGGTAAACTGAGCCCTACAGTGGCCAGTGTCACTGAGCACCCACTCAGAGCAGGACTGGACCCCAGACTGTTGACTCCAGTC
CACCACCTAGTTGACTCCTCGTTTCCCAGTGCACTCTGCTGATTTCTCCTTTGGCCCTTCCTACTCCCAGGATGGGACCCTGGGGGGTGGAGAGAGGGGCCTGCCTGTTCCTCCTCATCATGTCTTCC
CTCCCCTGAAGGAAAGTTGGCACTGGAGTCTCCCCAGTGCCACGGGCGGAGCCATGTATATATGTACATACTCAGTGCCTCAGTCCAGCTCCTCCATCTCGCTTCCACTGCACACAGGTCCGGGAAGG
AGAAAGGCCATGCCAAAGCGGGCCTAACCCCGCCCCACAATGCTCCACCCCCTCCCTGCCCAGGCCTCCTGGCCCCAGTGTCATCCCATCCCTAAAAACCTCGGGGACCAGGGGACAGAAAGCAGGAG
TTGGGTTTGCCTTATTTTGCTCATTGGATTCAACTTCTCTTTTGCATTGTTTTCTTCTGGCCCCTGTGGGAGTCCAGGGGCTGAGGAAAGGACAGATTTATGCAGCTATTTTCATACATTCCCTGTTG
AGAGTGGGTCGGGGTCCTCCCTTTAGCCTAACCATCCCATCCTTCACCCTCTGGCTGGGTGAGTCTCTGCATGTTTCCTTCACCGTGGTGGGAGATTGTTTGACTGAACCCCCACCCCCACCTTGGTC
TCCAGGAGTGTGGATGGTGGGGGATTTGTTTAAAAAAGACATTTTATTATAATAAAGTCTATTTTCACAAAA

hide sequence

RefSeq Acc Id:

XM_021724086 ⟹ XP_021579761

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	32,281,872 - 32,308,501 (-)	NCBI
SpeTri2.0	NW_004936490	4,766,564 - 4,793,174 (+)	NCBI

Sequence:

show sequence

TCCCCCTCATTCTGAGGCTCAGCCTTCCTCCGCGCCCACCATCTCCGGGCTCCGGGACTGTAAGGGACCCCTGCAGTCCCCCGAGCTGAGGCTAGCAGGGACAGAGACTATGAGGCAAGCAGCCCATC
GACCCAGGCCTCCTTAGGACCAGCCCCGCCACCCAGCAAGCGAGTGAGCAGCAGCAGAGAGAGGAGCGGAGATAAAAGACCACAAGGAACCACTGGGGATCACCCCCAACAGCTCCTGAGGACCCTAG
CCAGGCTGAGGGGTCATGATGGATGACCAGACTCACAGATGCTGACAGCCACACACCGATACCGATGCACGCAGCTGCACAAAACTGACACACTCAGATACAACCAGTGACAGCATCACACATTGCCA
CAGCCCTGCAATACAGACACCCCCACACGCAGAAACAACTGGCAACTCTGTAACAGGCACAGACAGTGACATACAGCACCACACTCTTCAACACACACAAGTGGGGGCACCCATCCTCCAAACACACA
CAAGATAGCATTGACCTGCAGGGGACAGACCTGGAGACACACACACGCATACCCTCACCCAGGCACTGCTGGTGGTGGCCTCGGCACATCCTCCCCACCCCCACAGGGACACCCTCACCTCCCCATAT
ACCCGAGCACTCACACACAACCACCAGCCAACATACCCCCAGCTCCAGCTCTGGCAGCACTGACGCCTTCTGCAGCCTCCTTCGCGGGTGGGGAAGGGCTCAGCCAACCTTGGATGGAGCTTCGGTGA
AGCCAAGAGCTCAGAGGGGAAGGGTCTAGCTTGGCATGACCATTGAAAGTCCCCTCACCTGGCTGGGTGATGTTCCCTGGCCTAGGTTCTGGGGTTCCTTGGCAGTACCATGGAGCAACTGACAACCC
TCCCTCAGCCTGGGGACCCAGGAGCCATGGAACCCTGGGCACTGCCCGCCTGGCAGAGCTGGACTCCGGGCCAGGGGGGCGAGCCTGGAGACAGAGCCCCAAGCATTGCTGACACTCCGACAGCTTTG
CAGGTTGGAGAACTGAGGCCGGAGGAGAGCTGCGAGCCTGAGGGAGCCCAGAGCCCCAGGCCCATGGGGGGCATTGACCCTGAAGGAGCAGAGGCTGGGCTGCCCAGCCTGGGGCAGCAAGCAGTGAT
CTCTGGTCGTGGTTGTCTGAGGCTGAAGGATGAGGATGTGGAGGCTTTGACTAAGGCCAAGGTGAACATGGGCTTTGGTGACAGACCCAATCTGGAGCTCCTGAGGGCCCTGGGTGAGCTGCAGCAGC
GCTGTGCCATCCTTAAGGAGGAAAACCAGATGCTGAGAAAGAGCAGCTTCCCCGAGACAGAGGAGAAGGTGCGGAGGCTGAAGCGGAAGAACGCAGAACTGGCGGTCATTGCCAAGCGCCTGGAGGAG
AGGGCCCGGAAGCTCCAGGAAACAAACCTGAGGGTGGTAAGTGCTCCCGTGCCTGGACCAGGGGCCAGCTTGGAGTTTTGCCGGAAGGCCCTAGCCCGCCAGCGAGCCCGGGATCTCAGTGACACAGC
CAGTGCACTGCTGGCCAAGGACAAGCAGATTGCTGCCTTGCAGCGGGAGTGCAGGGAGCTGCAGGCCAGGCTCACTCTGGTGGGAAAGGAGGGTCCCCAGTGGCTCCACGTGCGGGACTTCGACCGGT
TGCTGCGCGAGTCCCAGCGGGAGGTGCTGCGGCTGCAGAGACAGATCGCCCTGCGCAACCAGCAGGAGCCGCCCCCGCCACCCCGGCCCCCGGGCTCTACTGCCCCGGCTAGAGCAGGGGCGCCAGCC
CCGGGGGCTCCGGGAGAGGCCACACCTCAGGAGGATGTGGAGAGCCCACCCGTGGTCCTAGGGGAGCCTGAGAAACAGCCAAGGGTGCAGCAGCTGGAATCTGAGCTCAGCAAGAAGCGGAAGAAATG
CGAAAGTCTGGAGCAGGAAGCCCGGAAAAAGCAGAGGCGATGTGAGGAGCTGGAACTGCAGCTAAGAGAAGCCCAGAATGAGAATGCCCGCCTGGTGGAGGAGAACTCTCGGCTCAGTGGGAGAGCCT
CAGAGAAGGAGCAGGTTGAGTGGGAGAATGTGGAGTTGAGGGGCCAGCTCCTGGGGGTGACGCAGGAGAGGGACTCAGCCCTTCAAAAGAGCCAGGGCCTGCAAAGCAAGCTGGAGAGCCTGGAGCAG
GTGCTGAAGCACATGCGGGAGGTGGCCCAGCGGCGGCAGCAGCTGGAGGTGGAGCATGAGCAGGCTCGGCTCAGCCTGCGGGAGAAGCAAGAGGAGGTTCGACGGCTGCAGCAGGCCCAGGCAGAAGC
CAAGAGGGAACATGAAGGGGCTGTCCAGCTGCTGGAGTCCACCTTGGATTCCATGCAGGCCCGGGTTCGAGAGCTCGAGGAGCAGTGCCGCAGCCAGACGGAGCGTTTCAGCCTCCTGGCTCAGGAGC
TCCAGGCTTTTCGTCTGCACCCAGGCCCCTTGGATCTGCTCACTTCTGCCCTGGGCTGCAGTGCCCTGGGGGACCACCCACCACCCCCCTGCTGCTGCTCTACCCCCCAGCCCTGCCGGGGGTCTGGC
CCCAAAGACCTTGACCTCCCGCCGGGCTCACCAGGGCGCTGCACCCAAAAGTCTTCCGAGCCTGCCCCTGCCACCCTTACTGGGGTCCCTCGACGGACAGCCAAGAAGGCAGAGTCTCTCTCTAACTC
CTCTCGCTCCGAGTCCATCCACAACAGCCCCAAGTCATGCCCTACACCAGAGGTGGACACAGCCAGTGAGGTGGAGGAGCTAGAGGTGGACAGTGTGTCCCAGCTCCCAGCAGCCCCGGAGGGCAACC
CAGGAACAGCCAGGATCCAGGTCTTCCTAGCTCGCTATAGCTACAATCCCTTTGAGGGTCCCAACGAGAATCCAGAGGCAGAACTTCCCCTGACAGCTGGAGAGTACATTTACATCTATGGCAACATG
GACGAGGATGGATTTTTTGAAGGGGAGCTCATGGATGGCCGCAGGGGCCTGGTCCCTTCCAATTTTGTAGAGCGTGTGTCTGATGACGACCTCCTGACCTCTCTCCCTCCGGAGTTGGCCGATTTGTC
CCACAGCTCAGGCCCTGAACTCAGTTTCCTGAGCGGAGGTGGGGGTGGCAGCAGTAGCGGGGGCCAGAGCAGCGGGGGACGTAGCCAGCCCAGACCCGAGGAGGATGCCGGGGATGAGCTCAGTCTGA
GCCCCCCACCGGAGGGCCTGGGCGAGCCTCCAGCTGTGCCTTATCCCCGCCATCTGGTGGTCCTCAAGCAGCTGGCCCACAGTGTGGTGCTGGCCTGGGAGCTGCCTCCTGAACGTGTGGAACTACGT
GGCTTCCATATCAGCGTGAACGGGGAGCTGCGTCAGGCTCTGGGGCCCGGGGCACCTCCCAAGGCTGTGCTTGAGAACTTGGACTTGCAGGCCGGGCCCCTCCATGTTTCTGTCCAAGCCCTGACCAG
CAGGGGCAGTTCCGACCCTCTGCGCTGTTGCTTGGCCCTGGGTGCTCGGGCTGGGGTGGTACCTAGCCAGCTGCGGGTCCATCGGTTGACAGCCACGTCCGCTGAGATCACCTGGGTGCCCGGCAATA
GCAACTTGGCCCATGCCATCTACCTCAATGGGGAAGAGTGCCCATCTGCCCGCCCCAGCACCTACTGGGCCACCTTCTGCCACCTGCGGCCTGGCACACTGTATCAGGCCCGAGTGGAGGCTCAGCTC
CCATCCCGAGGGTCCTGGGAACCAGGCTGGGAGAAGCCAGACCAGCGGGCTGCCACCCTGCAGTTCACCACGCTCCCAGCAGGCCCTCCTGATGCCCCGCTGGATGTACAGATTGAGCCAGGGCCCTC
CCCTGGAATCTTGATCATTAGTTGGCTCCCAGTCACCATCGATGCTGCTGGCACCTCCAATGGCGTCCGAGTCACAGGCTATGCCATCTATGCTGATGGGCAGAAGATCATGGAGGTGGCGTCACCCA
CAGCCGGCAGCGTGCTGGTGGAGTTGTCCCAGCTGCAGCTGCTCCAGGTGTGCCACAAGGTGGTTGTGCGGACCATGTCGCCCCACGGAGAGTCGGCCGACTCCATTCCGGCCCCTATTGCTCCAGCC
CTGACTCCAGCCTGCTTGCCAGCCAGGGTCTCCTGCCCCTCACCACGACCAAGCCCAGAGGCCAGAACACCCCTTGCTCCAGCCTCCCCAGGGCCTGGGGACCCCAGCTCTCCCCTCTGGTGTCCTGC
CCCCCATGGAACTCAAGATCCCCCAGGAGGCCCCCCAGCAAGCCCTTCCAGAGAGATGCCAAAAGGACCCCAGGAGGAACCACCAGCCCCTTGCTCCCAGGAGGAGGCTGGGGCAGCTGTCCTGTGTG
CCTCAGAGGAGAAGAGGGCCAGCGAGCCAACCCTGGGGGAAGGAGGCCCTGGTCCCGTAGCTTTCTCCCTGGCTGAGCAGGAGGCCGAGTGGACGGCAGGAGAGGCCAGCTCCACAGCCTACTCCACT
CAGGCAACACCGGCCGAGAGGATGCCAAATACTGAGACCTGCTGCGGAGGAGATCCCGGGCCAGGACTGAGACCCAGGGCTGAGAAAGAGGACATGGCAGAGCTTGGGGTTCGCCTAGTGAACTCCCT
TGTGGATCATGGCCGTAACTCAGACCTGTCAGACATCCAGGAGGAGGAGGAAGAGGAGGAGGAGGATTTGGAGCTGGGTTCTAGGACCTGCTCTTTCCAGAAGCAGGTTGCTGGCAACAACACCAGGG
AGAATGGGGCCAAGTCCCAGCCTGACCTCTTTTGTGAGACTGACAGCGATGAGGAGATCTTGGAGCAGATCCTGGAGCTGCCCCTCCAGCAGTTCTGCAGCAAGAAGCTCTTTAGCATCCCCGAAGAG
GAGGAAGAGGAGGACGAGGACGACGAAGGGAAGCCAGGGGCAGGCTGTCCTTCCCAAGACCCTGGCCCACCTGAACCTGCATTGCTGGGGCTGGGCTGTGACAGGGGTCAGCCCCAAGGACCTGGCCT
GTGTCCCCTGTCTCCTGAGCCCTCCAGGGCCAGGGACTACCTGGAGGATCAATCCGGACTAGTCAGTGGAAGCTGCCGGAGGAGAGGAGGTAGCTCCCCAGAGAAGCCCCTAAACCGCCGGCGACCTC
CAGACCCCCGAGAACACTGCAGTCGGCTTCTCAGCAATGGCGGCGGGCCCCAGGCCTCGGCACGTCCAGGCCTCCCCCGGGACAGGAGTGTCCTCCCTGTGATTGAGGGCACCAGGAGTGGTGTAGAG
GCTGGTGGGCGAGGGCGATTGGGCCCTTCCCGGAGGTGCCACCGCGGCCGGGCCCCAGAATCTGGACTGTCCAGCTGCCTCTCCCCGAAGTGCTTGGAAATCAGCATTGAATACGATTCTGAGGACGA
GCAGGAAGCAGGCAGCGGGGGCATCAGCATCACCAGCTCCTGTTACCCGGCAGATGGGGAGGCCTGGGGCACAGCACCTATAGCAAGGCCCAGAGGGCCTCTGAAGGTCAATTCAGGCCCCCATCCCT
CCCCACGCCTCCCAGCCTGGGAGAAAGGGGAGCCAGAGCGGAGAGGGCGCAGTGCGACTGGCAGAGCCAAGGAGCCATCCTCCCGGACAACGGAGGCTGGCGAGCCCAGAGGGCAGGATTGCTCTGGG
CGGAGGGGACCCCAGAAGAGAGGGGCCCGGGTGCCCAGGCCAGGTGCCACTGACCTGGCTCCACCGAGGGGCCCGCCAGAAGCACTGGACCTACCTGTCAGGCTCTTTGTGGCTCTGTTTGACTATGA
CCCCGTGTCCATGTCACCCAACCCTGACGCTGGCGAAGAGGAGCTCCCTTTCCGGGAGGGCCAGATCCTGAAGGTGTTTGGGGACAAGGATGCCGATGGCTTCTACCAGGGTGAATGTGGGGGCCGGA
TGGGCTACATCCCCTGCAACATGGTGGCTGAGGTGGCTGTGGACAGTCCTGCAGGGAGACAGCAGCTACTCCAGCGGGGTTATTTATCTCCAGATGTTGTCCTTGAGGGCTCAGGGAACGGTCCCTTT
GTGTACTCTACAGCCCGCACACCTGGGCCTCCTCCCAAGCCCCGCCGCTCCAAGAAAGCAGATTCAGAAGGCCCTGTCCAGTCCTGTCCAGGCCCCTCCAAGCTGATTCCCTCTGCGGACCTGAAAGC
TCCCCGCCCCATGGTGGCTGCATTTGACTACGACCCCCGGGAGAACTCCCCCAACATGGACGTGGAGGCAGAGCTGCCCTTCAGGGCCGGGGACGTCATCACCGTGTTTGGGAGCATGGATGATGATG
GCTTCTACTATGGGGAACTGAACGGACAAAGGGGCCTAGTTCCATCCAACTTCCTGGAGGGACCTGGGCCTGAAGCAGGCAGCCCAGATAAGGAGCCTGGGATTCCCCAGGCCGAGAGTCAGGACTGG
GTCAGCATGACACAAGGGCCTCCAGTGCCCCCAGGCTGGCATCGTGCCCCTAGCCCTGGAAGCCCCTCCAGGACTGAACTGGGGGAGCCCCAGGGCACAATTGAGAAGGTATGGGGTCTCCTCTCCAA
AGGGAAGCAGCTCCTCAGGAAACTGGGCTCTGGAAAGAAGGAGTGAAGCTGTGGCCCATCCTGCAGGCAGAAGCGGACCCCAGAGATACCCAGGAAACTGTCCTGGCTGGGCAGGGAGGCCCCAGCAC
TCCCATTCCCCGACTGAACACTGGATGGGAATCAGAGAGACTGGGCAAAGGTGGGAGCTAGACGGGTCCTCACGGGGGGAGCCCTCCAGATGGGCTCCTTCCTCTTCCAGGAGGGTAAACTGAGCCCT
ACAGTGGCCAGTGTCACTGAGCACCCACTCAGAGCAGGACTGGACCCCAGACTGTTGACTCCAGTCCACCACCTAGTTGACTCCTCGTTTCCCAGTGCACTCTGCTGATTTCTCCTTTGGCCCTTCCT
ACTCCCAGGATGGGACCCTGGGGGGTGGAGAGAGGGGCCTGCCTGTTCCTCCTCATCATGTCTTCCCTCCCCTGAAGGAAAGTTGGCACTGGAGTCTCCCCAGTGCCACGGGCGGAGCCATGTATATA
TGTACATACTCAGTGCCTCAGTCCAGCTCCTCCATCTCGCTTCCACTGCACACAGGTCCGGGAAGGAGAAAGGCCATGCCAAAGCGGGCCTAACCCCGCCCCACAATGCTCCACCCCCTCCCTGCCCA
GGCCTCCTGGCCCCAGTGTCATCCCATCCCTAAAAACCTCGGGGACCAGGGGACAGAAAGCAGGAGTTGGGTTTGCCTTATTTTGCTCATTGGATTCAACTTCTCTTTTGCATTGTTTTCTTCTGGCC
CCTGTGGGAGTCCAGGGGCTGAGGAAAGGACAGATTTATGCAGCTATTTTCATACATTCCCTGTTGAGAGTGGGTCGGGGTCCTCCCTTTAGCCTAACCATCCCATCCTTCACCCTCTGGCTGGGTGA
GTCTCTGCATGTTTCCTTCACCGTGGTGGGAGATTGTTTGACTGAACCCCCACCCCCACCTTGGTCTCCAGGAGTGTGGATGGTGGGGGATTTGTTTAAAAAAGACATTTTATTATAATAAAGTCTAT
TTTCACAAAA

hide sequence

RefSeq Acc Id:

XM_040269030 ⟹ XP_040124964

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	32,281,872 - 32,308,501 (-)	NCBI

RefSeq Acc Id:

XM_040269031 ⟹ XP_040124965

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	32,281,872 - 32,308,501 (-)	NCBI

RefSeq Acc Id:

XM_040269032 ⟹ XP_040124966

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	32,281,872 - 32,308,500 (-)	NCBI

RefSeq Acc Id:

XM_040269033 ⟹ XP_040124967

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	32,281,872 - 32,308,500 (-)	NCBI


Protein RefSeqs	XP_005321639	(Get FASTA)	NCBI Sequence Viewer
	XP_021579761	(Get FASTA)	NCBI Sequence Viewer
	XP_040124964	(Get FASTA)	NCBI Sequence Viewer
	XP_040124965	(Get FASTA)	NCBI Sequence Viewer
	XP_040124966	(Get FASTA)	NCBI Sequence Viewer
	XP_040124967	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000021805.2
	ENSSTOP00000030141.1
	ENSSTOP00000030304.1
GenBank Protein	KAG3269348	(Get FASTA)	NCBI Sequence Viewer
	KAG3269349	(Get FASTA)	NCBI Sequence Viewer
	KAG3269350	(Get FASTA)	NCBI Sequence Viewer
	KAG3269351	(Get FASTA)	NCBI Sequence Viewer
	KAG3269352	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005321639 ⟸ XM_005321582
- Peptide Label:	isoform X4
- UniProtKB:	A0A287D9F9 (UniProtKB/TrEMBL), I3NBQ8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEQLTTLPQPGDPGAMEPWALPAWQSWTPGQGGEPGDRAPSIADTPTALQVGELRPEESCEPEGAQSPRPMGGIDPEGAEAGLPSLGQQAVISGRGCLRLKDEDVEALTKAKVNMGFGDRPNLELLRA LGELQQRCAILKEENQMLRKSSFPETEEKVRRLKRKNAELAVIAKRLEERARKLQETNLRVVSAPVPGPGASLEFCRKALARQRARDLSDTASALLAKDKQIAALQRECRELQARLTLVGKEGPQWLH VRDFDRLLRESQREVLRLQRQIALRNQQEPPPPPRPPGSTAPARAGAPAPGAPGEATPQEDVESPPVVLGEPEKQPRVQQLESELSKKRKKCESLEQEARKKQRRCEELELQLREAQNENARLVEENS RLSGRASEKEQVEWENVELRGQLLGVTQERDSALQKSQGLQSKLESLEQVLKHMREVAQRRQQLEVEHEQARLSLREKQEEVRRLQQAQAEAKREHEGAVQLLESTLDSMQARVRELEEQCRSQTERF SLLAQELQAFRLHPGPLDLLTSALGCSALGDHPPPPCCCSTPQPCRGSGPKDLDLPPGSPGRCTQKSSEPAPATLTGVPRRTAKKAESLSNSSRSESIHNSPKSCPTPEVDTASEVEELEVDSVSQLP AAPEGNPGTARIQVFLARYSYNPFEGPNENPEAELPLTAGEYIYIYGNMDEDGFFEGELMDGRRGLVPSNFVERVSDDDLLTSLPPELADLSHSSGPELSFLSGGGGGSSSGGQSSGGRSQPRPEEDA GDELSLSPPPEGLGEPPAVPYPRHLVVLKQLAHSVVLAWELPPERVELRGFHISVNGELRQALGPGAPPKAVLENLDLQAGPLHVSVQALTSRGSSDPLRCCLALGARAGVVPSQLRVHRLTATSAEI TWVPGNSNLAHAIYLNGEECPSARPSTYWATFCHLRPGTLYQARVEAQLPSRGSWEPGWEKPDQRAATLQFTTLPAGPPDAPLDVQIEPGPSPGILIISWLPVTIDAAGTSNGVRVTGYAIYADGQKI MEVASPTAGSVLVELSQLQLLQVCHKVVVRTMSPHGESADSIPAPIAPALTPACLPARVSCPSPRPSPEARTPLAPASPGPGDPSSPLWCPAPHGTQDPPGGPPASPSREMPKGPQEEPPAPCSQEEA GAAVLCASEEKRASEPTLGEGGPGPVAFSLAEQEAEWTAGEASSTAYSTQATPAERMPNTETCCGGDPGPGLRPRAEKEDMAELGVRLVNSLVDHGRNSDLSDIQEEEEEEEEDLELGSRTCSFQKQV AGNNTRENGAKSQPDLFCETDSDEEILEQILELPLQQFCSKKLFSIPEEEEEEDEDDEGKPGAGCPSQDPGPPEPALLGLGCDRGQPQGPGLCPLSPEPSRARDYLEDQSGLVSGSCRRRGGSSPEKP LNRRRPPDPREHCSRLLSNGGGPQASARPGLPRDRSVLPVIEGTRSGVEAGGRGRLGPSRRCHRGRAPESGLSSCLSPKCLEISIEYDSEDEQEAGSGGISITSSCYPADGEAWGTAPIARPRGPLKV NSGPHPSPRLPAWEKGEPERRGRSATGRAKEPSSRTTEAGEPRGQDCSGRRGPQKRGARVPRPGATDLAPPRGPPEALDLPVRLFVALFDYDPVSMSPNPDAGEEELPFREGQILKVFGDKDADGFYQ GECGGRMGYIPCNMVAEVAVDSPAGRQQLLQRGYLSPDVVLEGSGNGPFVYSTARTPGPPPKPRRSKKADSEGPVQSCPGPSKLIPSADLKAPRPMVAAFDYDPRENSPNMDVEAELPFRAGDVITVF GSMDDDGFYYGELNGQRGLVPSNFLEGPGPEAGSPDKEPGIPQAESQRMRRRRVQC hide sequence

RefSeq Acc Id:	XP_021579761 ⟸ XM_021724086
- Peptide Label:	isoform X1
- UniProtKB:	A0A287D9T9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEQLTTLPQPGDPGAMEPWALPAWQSWTPGQGGEPGDRAPSIADTPTALQVGELRPEESCEPEG AQSPRPMGGIDPEGAEAGLPSLGQQAVISGRGCLRLKDEDVEALTKAKVNMGFGDRPNLELLRALGELQQRCAILKEENQMLRKSSFPETEEKVRRLKRKNAELAVIAKRLEERARKLQETNLRVVSA PVPGPGASLEFCRKALARQRARDLSDTASALLAKDKQIAALQRECRELQARLTLVGKEGPQWLHVRDFDRLLRESQREVLRLQRQIALRNQQEPPPPPRPPGSTAPARAGAPAPGAPGEATPQEDVES PPVVLGEPEKQPRVQQLESELSKKRKKCESLEQEARKKQRRCEELELQLREAQNENARLVEENSRLSGRASEKEQVEWENVELRGQLLGVTQERDSALQKSQGLQSKLESLEQVLKHMREVAQRRQQL EVEHEQARLSLREKQEEVRRLQQAQAEAKREHEGAVQLLESTLDSMQARVRELEEQCRSQTERFSLLAQELQAFRLHPGPLDLLTSALGCSALGDHPPPPCCCSTPQPCRGSGPKDLDLPPGSPGRCT QKSSEPAPATLTGVPRRTAKKAESLSNSSRSESIHNSPKSCPTPEVDTASEVEELEVDSVSQLPAAPEGNPGTARIQVFLARYSYNPFEGPNENPEAELPLTAGEYIYIYGNMDEDGFFEGELMDGRR GLVPSNFVERVSDDDLLTSLPPELADLSHSSGPELSFLSGGGGGSSSGGQSSGGRSQPRPEEDAGDELSLSPPPEGLGEPPAVPYPRHLVVLKQLAHSVVLAWELPPERVELRGFHISVNGELRQALG PGAPPKAVLENLDLQAGPLHVSVQALTSRGSSDPLRCCLALGARAGVVPSQLRVHRLTATSAEITWVPGNSNLAHAIYLNGEECPSARPSTYWATFCHLRPGTLYQARVEAQLPSRGSWEPGWEKPDQ RAATLQFTTLPAGPPDAPLDVQIEPGPSPGILIISWLPVTIDAAGTSNGVRVTGYAIYADGQKIMEVASPTAGSVLVELSQLQLLQVCHKVVVRTMSPHGESADSIPAPIAPALTPACLPARVSCPSP RPSPEARTPLAPASPGPGDPSSPLWCPAPHGTQDPPGGPPASPSREMPKGPQEEPPAPCSQEEAGAAVLCASEEKRASEPTLGEGGPGPVAFSLAEQEAEWTAGEASSTAYSTQATPAERMPNTETCC GGDPGPGLRPRAEKEDMAELGVRLVNSLVDHGRNSDLSDIQEEEEEEEEDLELGSRTCSFQKQVAGNNTRENGAKSQPDLFCETDSDEEILEQILELPLQQFCSKKLFSIPEEEEEEDEDDEGKPGAG CPSQDPGPPEPALLGLGCDRGQPQGPGLCPLSPEPSRARDYLEDQSGLVSGSCRRRGGSSPEKPLNRRRPPDPREHCSRLLSNGGGPQASARPGLPRDRSVLPVIEGTRSGVEAGGRGRLGPSRRCHR GRAPESGLSSCLSPKCLEISIEYDSEDEQEAGSGGISITSSCYPADGEAWGTAPIARPRGPLKVNSGPHPSPRLPAWEKGEPERRGRSATGRAKEPSSRTTEAGEPRGQDCSGRRGPQKRGARVPRPG ATDLAPPRGPPEALDLPVRLFVALFDYDPVSMSPNPDAGEEELPFREGQILKVFGDKDADGFYQGECGGRMGYIPCNMVAEVAVDSPAGRQQLLQRGYLSPDVVLEGSGNGPFVYSTARTPGPPPKPR RSKKADSEGPVQSCPGPSKLIPSADLKAPRPMVAAFDYDPRENSPNMDVEAELPFRAGDVITVFGSMDDDGFYYGELNGQRGLVPSNFLEGPGPEAGSPDKEPGIPQAESQDWVSMTQGPPVPPGWHR APSPGSPSRTELGEPQGTIEKVWGLLSKGKQLLRKLGSGKKE hide sequence

RefSeq Acc Id:	XP_040124965 ⟸ XM_040269031
- Peptide Label:	isoform X3
- UniProtKB:	A0A287D9T9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040124964 ⟸ XM_040269030
- Peptide Label:	isoform X2
- UniProtKB:	A0A287D9T9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040124967 ⟸ XM_040269033
- Peptide Label:	isoform X6
- UniProtKB:	A0A287D9T9 (UniProtKB/TrEMBL)

Protein Domains

Fibronectin type-III SH3

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000023162	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000020180.2	UniProtKB/TrEMBL
	ENSSTOT00000033918.1	UniProtKB/TrEMBL
	ENSSTOT00000040121.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
	SH3 Domains	UniProtKB/TrEMBL
InterPro	FN3_dom	UniProtKB/TrEMBL
	FN3_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	RIM-BP_SH3_2	UniProtKB/TrEMBL
	RIM-BP_SH3_3	UniProtKB/TrEMBL
	RIMBP1/2/3	UniProtKB/TrEMBL
	SH3-like_dom_sf	UniProtKB/TrEMBL
	SH3_domain	UniProtKB/TrEMBL
NCBI Gene	Tspoap1	ENTREZGENE
PANTHER	PERIPHERAL-TYPE BENZODIAZEPINE RECEPTOR-ASSOCIATED PROTEIN 1	UniProtKB/TrEMBL
	PTHR14234	UniProtKB/TrEMBL
Pfam	SH3_2	UniProtKB/TrEMBL
	SH3_9	UniProtKB/TrEMBL
PROSITE	FN3	UniProtKB/TrEMBL
	SH3	UniProtKB/TrEMBL
SMART	FN3	UniProtKB/TrEMBL
	SH3	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49265	UniProtKB/TrEMBL
	SSF50044	UniProtKB/TrEMBL
UniProt	A0A287D9F9	ENTREZGENE, UniProtKB/TrEMBL
	A0A287D9T9	ENTREZGENE, UniProtKB/TrEMBL
	I3NBQ8	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM