Abtb2 (ankyrin repeat and BTB domain containing 2) - Rat Genome Database

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Gene: Abtb2 (ankyrin repeat and BTB domain containing 2) Ictidomys tridecemlineatus
Analyze
Symbol: Abtb2
Name: ankyrin repeat and BTB domain containing 2
RGD ID: 12673640
Description: ENCODES a protein that exhibits protein heterodimerization activity (inferred); INVOLVED IN cellular response to toxic substance (ortholog); ASSOCIATED WITH intellectual disability (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ankyrin repeat and BTB/POZ domain-containing protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494730,581,110 - 30,742,203 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365333,705,873 - 3,867,106 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365333,705,902 - 3,866,998 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Abtb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494730,581,110 - 30,742,203 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365333,705,873 - 3,867,106 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365333,705,902 - 3,866,998 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABTB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381134,150,987 - 34,358,010 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1134,150,987 - 34,358,010 (-)EnsemblGRCh38hg38GRCh38
GRCh371134,172,534 - 34,379,557 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361134,129,111 - 34,335,378 (-)NCBINCBI36Build 36hg18NCBI36
Build 341134,129,110 - 34,335,378NCBI
Celera1134,320,078 - 34,526,769 (-)NCBICelera
Cytogenetic Map11p13NCBI
HuRef1133,869,169 - 34,076,838 (-)NCBIHuRef
CHM1_11134,171,903 - 34,378,573 (-)NCBICHM1_1
T2T-CHM13v2.01134,287,990 - 34,494,746 (-)NCBIT2T-CHM13v2.0
Abtb2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392103,396,655 - 103,548,768 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2103,396,655 - 103,548,768 (+)EnsemblGRCm39 Ensembl
GRCm382103,566,310 - 103,718,423 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2103,566,310 - 103,718,423 (+)EnsemblGRCm38mm10GRCm38
MGSCv372103,406,467 - 103,558,580 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362103,367,149 - 103,519,262 (+)NCBIMGSCv36mm8
Celera2104,814,461 - 104,967,567 (+)NCBICelera
Cytogenetic Map2E2NCBI
cM Map254.43NCBI
Abtb2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83110,409,672 - 110,563,488 (+)NCBIGRCr8
mRatBN7.2389,954,726 - 90,108,549 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl389,954,713 - 90,108,548 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx393,448,249 - 93,601,949 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03102,047,320 - 102,201,032 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0399,878,295 - 100,032,334 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0393,494,706 - 93,648,750 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl393,495,106 - 93,647,721 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03100,136,224 - 100,290,000 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4388,858,336 - 89,012,166 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1388,754,763 - 88,908,594 (+)NCBI
Celera389,022,954 - 89,176,876 (+)NCBICelera
Cytogenetic Map3q32NCBI
Abtb2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542211,913,334 - 12,081,323 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542211,913,334 - 12,082,421 (+)NCBIChiLan1.0ChiLan1.0
ABTB2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2936,375,204 - 36,583,194 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11136,380,013 - 36,588,023 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01134,127,668 - 34,335,680 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11134,006,139 - 34,212,042 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1134,015,276 - 34,211,591 (-)Ensemblpanpan1.1panPan2
ABTB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11833,483,925 - 33,651,165 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1833,483,862 - 33,650,327 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1833,090,280 - 33,257,034 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01834,095,625 - 34,262,444 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1834,095,148 - 34,262,442 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11833,654,976 - 33,821,572 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01833,247,108 - 33,414,047 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01833,882,624 - 34,049,579 (+)NCBIUU_Cfam_GSD_1.0
ABTB2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl226,548,852 - 26,782,172 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1226,579,526 - 26,782,180 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2228,946,563 - 29,149,547 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ABTB2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1130,906,832 - 31,120,948 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl130,907,236 - 31,119,590 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038128,016,431 - 128,224,522 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Abtb2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476712,794,431 - 12,962,770 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476712,793,687 - 12,963,836 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005327420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000001843   ⟹   ENSSTOP00000001645
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365333,705,873 - 3,867,106 (+)Ensembl
RefSeq Acc Id: XM_005327420   ⟹   XP_005327477
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494730,581,110 - 30,742,203 (+)NCBI
SpeTri2.0NW_0049365333,705,902 - 3,866,998 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005327477 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000001645.2
GenBank Protein KAG3285480 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005327477   ⟸   XM_005327420
- UniProtKB: I3LZB6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000001645   ⟸   ENSSTOT00000001843
Protein Domains
BTB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000001839 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000001843.3 UniProtKB/TrEMBL
Gene3D-CATH 1.10.20.10 UniProtKB/TrEMBL
  1.25.40.20 UniProtKB/TrEMBL
InterPro ABTB2_BTB_POZ UniProtKB/TrEMBL
  Ankyrin-BTB/POZ_domain UniProtKB/TrEMBL
  Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  BTB/POZ_dom UniProtKB/TrEMBL
  Histone-fold UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
NCBI Gene Abtb2 ENTREZGENE
PANTHER ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING UniProtKB/TrEMBL
  ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING PROTEIN 2 UniProtKB/TrEMBL
Pfam Ank UniProtKB/TrEMBL
  Ank_2 UniProtKB/TrEMBL
  BTB UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
  BTB UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
  BTB UniProtKB/TrEMBL
Superfamily-SCOP SSF47113 UniProtKB/TrEMBL
  SSF48403 UniProtKB/TrEMBL
  SSF54695 UniProtKB/TrEMBL
UniProt I3LZB6 ENTREZGENE, UniProtKB/TrEMBL