Abtb2 (ankyrin repeat and BTB domain containing 2) - Rat Genome Database

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Gene: Abtb2 (ankyrin repeat and BTB domain containing 2) Chinchilla lanigera
Analyze
Symbol: Abtb2
Name: ankyrin repeat and BTB domain containing 2
RGD ID: 8937083
Description: INVOLVED IN cellular response to toxic substance (ortholog); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ankyrin repeat and BTB (POZ) domain containing 2; ankyrin repeat and BTB/POZ domain-containing protein 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542211,913,334 - 12,081,323 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542211,913,334 - 12,082,421 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Abtb2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542211,913,334 - 12,081,323 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542211,913,334 - 12,082,421 (+)NCBIChiLan1.0ChiLan1.0
ABTB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381134,150,987 - 34,358,010 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1134,150,987 - 34,358,010 (-)EnsemblGRCh38hg38GRCh38
GRCh371134,172,534 - 34,379,557 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361134,129,111 - 34,335,378 (-)NCBINCBI36Build 36hg18NCBI36
Build 341134,129,110 - 34,335,378NCBI
Celera1134,320,078 - 34,526,769 (-)NCBICelera
Cytogenetic Map11p13NCBI
HuRef1133,869,169 - 34,076,838 (-)NCBIHuRef
CHM1_11134,171,903 - 34,378,573 (-)NCBICHM1_1
T2T-CHM13v2.01134,287,990 - 34,494,746 (-)NCBIT2T-CHM13v2.0
Abtb2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392103,396,655 - 103,548,768 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2103,396,655 - 103,548,768 (+)EnsemblGRCm39 Ensembl
GRCm382103,566,310 - 103,718,423 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2103,566,310 - 103,718,423 (+)EnsemblGRCm38mm10GRCm38
MGSCv372103,406,467 - 103,558,580 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362103,367,149 - 103,519,262 (+)NCBIMGSCv36mm8
Celera2104,814,461 - 104,967,567 (+)NCBICelera
Cytogenetic Map2E2NCBI
cM Map254.43NCBI
Abtb2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83110,409,672 - 110,563,488 (+)NCBIGRCr8
mRatBN7.2389,954,726 - 90,108,549 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl389,954,713 - 90,108,548 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx393,448,249 - 93,601,949 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03102,047,320 - 102,201,032 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0399,878,295 - 100,032,334 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0393,494,706 - 93,648,750 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl393,495,106 - 93,647,721 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03100,136,224 - 100,290,000 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4388,858,336 - 89,012,166 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1388,754,763 - 88,908,594 (+)NCBI
Celera389,022,954 - 89,176,876 (+)NCBICelera
Cytogenetic Map3q32NCBI
ABTB2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2936,375,204 - 36,583,194 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11136,380,013 - 36,588,023 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01134,127,668 - 34,335,680 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11134,006,139 - 34,212,042 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1134,015,276 - 34,211,591 (-)Ensemblpanpan1.1panPan2
ABTB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11833,483,925 - 33,651,165 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1833,483,862 - 33,650,327 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1833,090,280 - 33,257,034 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01834,095,625 - 34,262,444 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1834,095,148 - 34,262,442 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11833,654,976 - 33,821,572 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01833,247,108 - 33,414,047 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01833,882,624 - 34,049,579 (+)NCBIUU_Cfam_GSD_1.0
Abtb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494730,581,110 - 30,742,203 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365333,705,873 - 3,867,106 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365333,705,902 - 3,866,998 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABTB2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl226,548,852 - 26,782,172 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1226,579,526 - 26,782,180 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2228,946,563 - 29,149,547 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ABTB2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1130,906,832 - 31,120,948 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl130,907,236 - 31,119,590 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038128,016,431 - 128,224,522 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Abtb2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476712,794,431 - 12,962,770 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476712,793,687 - 12,963,836 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000021876   ⟹   ENSCLAP00000021673
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542211,913,334 - 12,081,323 (+)Ensembl
RefSeq Acc Id: XM_005384147   ⟹   XP_005384204
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542211,913,334 - 12,082,421 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005384204 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000021673
  ENSCLAP00000021673.1
Reference Protein Sequences
RefSeq Acc Id: XP_005384204   ⟸   XM_005384147
- UniProtKB: A0A8C2W1L2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000021673   ⟸   ENSCLAT00000021876
Protein Domains
BTB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000014834 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000021876 ENTREZGENE
  ENSCLAT00000021876.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.20.10 UniProtKB/TrEMBL
  1.25.40.20 UniProtKB/TrEMBL
InterPro ABTB2_BTB_POZ UniProtKB/TrEMBL
  Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  BTB/POZ_dom UniProtKB/TrEMBL
  Histone-fold UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
NCBI Gene Abtb2 ENTREZGENE
PANTHER ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING UniProtKB/TrEMBL
  ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING PROTEIN 2 UniProtKB/TrEMBL
Pfam Ank UniProtKB/TrEMBL
  Ank_2 UniProtKB/TrEMBL
  BTB UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
  BTB UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
  BTB UniProtKB/TrEMBL
Superfamily-SCOP SSF47113 UniProtKB/TrEMBL
  SSF48403 UniProtKB/TrEMBL
  SSF54695 UniProtKB/TrEMBL
UniProt A0A8C2W1L2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Abtb2  ankyrin repeat and BTB domain containing 2    ankyrin repeat and BTB (POZ) domain containing 2  Symbol and/or name change 5135510 APPROVED