Ints2 (integrator complex subunit 2) - Rat Genome Database

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Gene: Ints2 (integrator complex subunit 2) Ictidomys tridecemlineatus
Analyze
Symbol: Ints2
Name: integrator complex subunit 2
RGD ID: 12672399
Description: INVOLVED IN snRNA 3'-end processing (inferred); snRNA processing (inferred); ASSOCIATED WITH bladder exstrophy-epispadias-cloacal exstrophy complex (ortholog); genetic disease (ortholog); megacolon (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: integrator complex subunit 2, transcript variant X1; integrator complex subunit 2, transcript variant X2; integrator complex subunit 2, transcript variant X3; integrator complex subunit 2, transcript variant X4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560233,878,765 - 33,933,370 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364903,141,116 - 3,196,291 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364903,141,258 - 3,196,257 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ints2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560233,878,765 - 33,933,370 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364903,141,116 - 3,196,291 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364903,141,258 - 3,196,257 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
INTS2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381761,865,367 - 61,927,982 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1761,865,367 - 61,928,016 (-)EnsemblGRCh38hg38GRCh38
GRCh371759,942,728 - 60,005,343 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361757,297,513 - 57,360,159 (-)NCBINCBI36Build 36hg18NCBI36
Celera1759,043,908 - 59,106,528 (-)NCBICelera
Cytogenetic Map17q23.2NCBI
HuRef1755,308,511 - 55,371,092 (-)NCBIHuRef
CHM1_11760,007,281 - 60,069,924 (-)NCBICHM1_1
T2T-CHM13v2.01762,734,308 - 62,796,936 (-)NCBIT2T-CHM13v2.0
Ints2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391186,101,507 - 86,148,912 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1186,101,507 - 86,148,401 (-)EnsemblGRCm39 Ensembl
GRCm381186,210,681 - 86,257,609 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1186,210,681 - 86,257,575 (-)EnsemblGRCm38mm10GRCm38
MGSCv371186,024,185 - 86,071,070 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361186,026,878 - 86,073,763 (-)NCBIMGSCv36mm8
Celera1195,830,991 - 95,877,729 (-)NCBICelera
Cytogenetic Map11CNCBI
cM Map1151.71NCBI
Ints2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81071,529,021 - 71,576,529 (-)NCBIGRCr8
mRatBN7.21071,031,647 - 71,079,138 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1071,031,647 - 71,079,076 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1075,651,577 - 75,699,001 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01075,156,382 - 75,203,807 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01070,621,014 - 70,668,445 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01073,632,805 - 73,690,952 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1073,634,255 - 73,690,887 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01073,568,848 - 73,589,469 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01073,534,365 - 73,559,322 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41074,462,429 - 74,485,977 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11074,453,672 - 74,500,374 (-)NCBI
Celera1069,953,696 - 70,001,622 (-)NCBICelera
Cytogenetic Map10q26NCBI
Ints2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554512,822,081 - 2,876,313 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554512,822,081 - 2,876,117 (-)NCBIChiLan1.0ChiLan1.0
INTS2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21978,065,311 - 78,124,120 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11782,884,935 - 82,942,044 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01755,974,620 - 56,033,412 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11761,086,226 - 61,142,870 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1761,087,454 - 61,141,557 (-)Ensemblpanpan1.1panPan2
INTS2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1934,749,898 - 34,801,591 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl934,749,990 - 34,800,621 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha933,979,721 - 34,032,013 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0935,560,264 - 35,612,856 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl935,560,254 - 35,612,851 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1934,342,997 - 34,395,514 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0934,628,051 - 34,680,590 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0934,714,833 - 34,767,361 (+)NCBIUU_Cfam_GSD_1.0
INTS2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1236,434,438 - 36,496,991 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11236,434,393 - 36,496,593 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21237,757,197 - 37,787,927 (+)NCBISscrofa10.2Sscrofa10.2susScr3
INTS2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11633,086,460 - 33,148,261 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1633,086,467 - 33,148,084 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660773,851,310 - 3,916,063 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ints2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248711,997,806 - 2,051,421 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248711,997,900 - 2,047,535 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000011110   ⟹   ENSSTOP00000009966
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364903,141,116 - 3,196,291 (-)Ensembl
RefSeq Acc Id: XM_005321550   ⟹   XP_005321607
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560233,878,790 - 33,933,370 (+)NCBI
SpeTri2.0NW_0049364903,141,258 - 3,196,257 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021724057   ⟹   XP_021579732
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560233,878,792 - 33,933,370 (+)NCBI
SpeTri2.0NW_0049364903,141,258 - 3,196,231 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021724058   ⟹   XP_021579733
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560233,878,765 - 33,933,370 (+)NCBI
SpeTri2.0NW_0049364903,141,258 - 3,196,245 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040269073   ⟹   XP_040125007
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560233,878,790 - 33,933,370 (+)NCBI
RefSeq Acc Id: XM_040269074   ⟹   XP_040125008
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560233,878,791 - 33,933,370 (+)NCBI
RefSeq Acc Id: XM_040269075   ⟹   XP_040125009
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560233,878,791 - 33,931,566 (+)NCBI
RefSeq Acc Id: XR_005726398
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560233,878,791 - 33,931,772 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_005321607   ⟸   XM_005321550
- Peptide Label: isoform X3
- UniProtKB: I3MGP5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021579733   ⟸   XM_021724058
- Peptide Label: isoform X2
- UniProtKB: I3MGP5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021579732   ⟸   XM_021724057
- Peptide Label: isoform X1
- UniProtKB: I3MGP5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040125007   ⟸   XM_040269073
- Peptide Label: isoform X3
- UniProtKB: I3MGP5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040125008   ⟸   XM_040269074
- Peptide Label: isoform X4
- UniProtKB: I3MGP5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040125009   ⟸   XM_040269075
- Peptide Label: isoform X5
- UniProtKB: I3MGP5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000009966   ⟸   ENSSTOT00000011110


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000011102 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000011110.3 UniProtKB/TrEMBL
InterPro Int2_metazoa UniProtKB/TrEMBL
  INTS2 UniProtKB/TrEMBL
NCBI Gene Ints2 ENTREZGENE
PANTHER INTEGRATOR COMPLEX SUBUNIT 2 UniProtKB/TrEMBL
  PTHR28608 UniProtKB/TrEMBL
Pfam INTS2 UniProtKB/TrEMBL
PRINTS INTSUBUNIT2 UniProtKB/TrEMBL
UniProt I3MGP5 ENTREZGENE, UniProtKB/TrEMBL