Plgrkt (plasminogen receptor with a C-terminal lysine) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Plgrkt (plasminogen receptor with a C-terminal lysine) Ictidomys tridecemlineatus
Analyze
Symbol: Plgrkt
Name: plasminogen receptor with a C-terminal lysine
RGD ID: 12651590
Description: INVOLVED IN positive regulation of plasminogen activation (ortholog); ASSOCIATED WITH chromosome 9p deletion syndrome (ortholog); genetic disease (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: plasminogen receptor (KT)
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947141,608,194 - 141,660,194 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493653960,865 - 112,887 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493653960,884 - 112,847 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Plgrkt
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947141,608,194 - 141,660,194 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493653960,865 - 112,887 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493653960,884 - 112,847 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLGRKT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3895,357,971 - 5,438,377 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl95,357,971 - 5,437,925 (-)EnsemblGRCh38hg38GRCh38
GRCh3795,357,971 - 5,437,925 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3695,347,971 - 5,427,860 (-)NCBINCBI36Build 36hg18NCBI36
Build 3495,347,972 - 5,427,860NCBI
Celera95,283,603 - 5,363,499 (-)NCBICelera
Cytogenetic Map9p24.1NCBI
HuRef95,313,696 - 5,393,718 (-)NCBIHuRef
CHM1_195,358,145 - 5,438,187 (-)NCBICHM1_1
T2T-CHM13v2.095,363,085 - 5,447,429 (-)NCBIT2T-CHM13v2.0
Plgrkt
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391929,326,004 - 29,339,340 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1929,325,999 - 29,344,790 (-)EnsemblGRCm39 Ensembl
GRCm381929,348,599 - 29,367,292 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1929,348,599 - 29,367,390 (-)EnsemblGRCm38mm10GRCm38
MGSCv371929,423,167 - 29,436,361 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361929,414,674 - 29,427,868 (-)NCBIMGSCv36mm8
Celera1930,125,296 - 30,138,483 (-)NCBICelera
Cytogenetic Map19C1NCBI
cM Map1923.85NCBI
Plgrkt
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81236,512,574 - 236,526,858 (-)NCBIGRCr8
mRatBN7.21227,099,005 - 227,111,277 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1227,099,015 - 227,111,194 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1235,500,686 - 235,512,900 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01242,430,352 - 242,442,564 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01235,247,195 - 235,259,453 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01247,502,274 - 247,514,540 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1247,502,280 - 247,514,540 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01254,750,909 - 254,763,185 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41233,030,393 - 233,042,659 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11233,194,697 - 233,211,483 (-)NCBI
Celera1224,250,460 - 224,262,693 (-)NCBICelera
Cytogenetic Map1q52NCBI
Plgrkt
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554349,424,397 - 9,468,159 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554349,424,793 - 9,468,055 (-)NCBIChiLan1.0ChiLan1.0
PLGRKT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v211119,134,700 - 119,195,015 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan19119,141,982 - 119,201,691 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v095,196,843 - 5,257,138 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.195,382,302 - 5,442,429 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl95,382,302 - 5,441,993 (-)Ensemblpanpan1.1panPan2
PLGRKT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1193,523,415 - 93,576,908 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl193,523,572 - 93,575,747 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha193,931,618 - 93,985,126 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0194,077,061 - 94,130,510 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl194,077,218 - 94,129,344 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1193,709,441 - 93,762,937 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0193,434,014 - 93,487,483 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0194,198,386 - 94,251,904 (-)NCBIUU_Cfam_GSD_1.0
PLGRKT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1216,692,047 - 216,739,722 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11216,692,002 - 216,739,726 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21242,425,698 - 242,473,410 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PLGRKT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11274,069,239 - 74,144,882 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1274,069,306 - 74,144,454 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603862,460,671 - 62,536,220 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plgrkt
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247369,906,633 - 9,969,183 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247369,908,482 - 9,968,771 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005327957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000015820   ⟹   ENSSTOP00000014160
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493653960,865 - 112,887 (-)Ensembl
RefSeq Acc Id: XM_005327957   ⟹   XP_005328014
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947141,608,194 - 141,660,194 (-)NCBI
SpeTri2.0NW_00493653960,884 - 112,847 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005328014 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000014160.2
GenBank Protein KAG3287192 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005328014   ⟸   XM_005327957
- UniProtKB: I3MQF0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000014160   ⟸   ENSSTOT00000015820


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000015819 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000015820.3 UniProtKB/TrEMBL
InterPro Plg-R(KT) UniProtKB/TrEMBL
NCBI Gene Plgrkt ENTREZGENE
PANTHER PLASMINOGEN RECEPTOR (KT) UniProtKB/TrEMBL
  PTHR13411 UniProtKB/TrEMBL
Pfam DUF2368 UniProtKB/TrEMBL
UniProt I3MQF0 ENTREZGENE, UniProtKB/TrEMBL