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Gene: Fhip1a (FHF complex subunit HOOK interacting protein 1A) Ictidomys tridecemlineatus

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Symbol:

Fhip1a

Name:

FHF complex subunit HOOK interacting protein 1A

RGD ID:

12650687

Description:

INVOLVED IN protein localization to perinuclear region of cytoplasm (inferred); ASSOCIATED WITH COVID-19 (ortholog); High Myopia (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

Fam160a1; family with sequence similarity 160 member A1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405301	40,886,253 - 41,122,492 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936689	1,408,748 - 1,640,049 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936689	1,408,755 - 1,646,271 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

High Myopia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

protein localization to perinuclear region of cytoplasm (IEA)

Molecular Function

protein binding (ISO)

References

Genomics

Comparative Map Data

Fhip1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405301	40,886,253 - 41,122,492 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936689	1,408,748 - 1,640,049 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936689	1,408,755 - 1,646,271 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FHIP1A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	151,409,176 - 151,670,503 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	151,409,176 - 151,670,503 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	152,330,328 - 152,591,655 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	152,623,211 - 152,803,356 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	4	149,654,831 - 149,908,687 (+)	NCBI		Celera
Cytogenetic Map	4	q31.3	NCBI
HuRef	4	148,055,337 - 148,310,292 (+)	NCBI		HuRef
CHM1_1	4	152,307,963 - 152,562,804 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	154,733,031 - 154,993,605 (+)	NCBI		T2T-CHM13v2.0

Fhip1a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	85,567,370 - 85,653,516 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	85,567,368 - 85,724,598 (-)	Ensembl		GRCm39 Ensembl
GRCm38	3	85,660,063 - 85,785,302 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	85,660,061 - 85,817,291 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	85,463,985 - 85,550,131 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	85,745,993 - 85,808,435 (-)	NCBI		MGSCv36	mm8
Celera	3	85,681,134 - 85,769,538 (-)	NCBI		Celera
Cytogenetic Map	3	F1	NCBI
cM Map	3	37.83	NCBI

Fhip1a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	173,319,252 - 173,489,514 (-)	NCBI		GRCr8
mRatBN7.2	2	171,016,951 - 171,265,715 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	171,021,246 - 171,265,848 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	178,171,989 - 178,241,117 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	176,191,925 - 176,261,053 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	170,793,459 - 170,862,609 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	184,684,851 - 184,993,350 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	184,941,700 - 185,168,773 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	204,082,397 - 204,087,493 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Rnor_5.0	2	204,332,904 - 204,386,515 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	177,632,481 - 177,641,802 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	2	165,000,309 - 165,065,248 (-)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

Fhip1a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955471	6,051,733 - 6,222,896 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955471	5,985,150 - 6,229,720 (+)	NCBI	ChiLan1.0	ChiLan1.0

FHIP1A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	149,291,711 - 149,550,493 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	149,648,805 - 149,907,577 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	143,746,238 - 144,004,988 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	155,399,009 - 155,657,450 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	155,553,163 - 155,649,725 (+)	Ensembl	panpan1.1		panPan2

FHIP1A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	49,373,596 - 49,603,177 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	49,373,465 - 49,596,556 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	49,717,302 - 49,950,784 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	50,050,169 - 50,279,755 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	50,050,190 - 50,278,683 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	49,312,332 - 49,551,637 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	49,419,297 - 49,653,031 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	49,731,061 - 49,963,660 (+)	NCBI		UU_Cfam_GSD_1.0

FHIP1A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	77,328,621 - 77,602,069 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	77,328,626 - 77,628,111 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	81,905,052 - 81,912,993 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FHIP1A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	97,980,815 - 98,239,844 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	98,142,435 - 98,237,603 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	77,592,671 - 77,857,405 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fhip1a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624858	2,937,444 - 3,118,350 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624858	2,860,489 - 3,116,021 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005337599	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040293192	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040293193	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000360	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000023640 ⟹ ENSSTOP00000022212

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936689	1,408,748 - 1,640,049 (+)	Ensembl

Ensembl Acc Id:

ENSSTOT00000026085 ⟹ ENSSTOP00000016500

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936689	1,408,748 - 1,640,049 (+)	Ensembl

Ensembl Acc Id:

ENSSTOT00000037851 ⟹ ENSSTOP00000031295

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936689	1,549,722 - 1,640,049 (+)	Ensembl

RefSeq Acc Id:

XM_005337599 ⟹ XP_005337656

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405301	40,891,197 - 41,122,492 (-)	NCBI
SpeTri2.0	NW_004936689	1,408,755 - 1,646,271 (+)	NCBI

Sequence:

show sequence

CGGGCGGGGAGCCGGCTCTGCCTTCCTCGCAGTGCCCAGCGCCGGTGGCGGCTCCGGGGCCCGA
CCCTCCGGGACCGCGGAGCAAACTTTGTGACTGAACGGGGACGCTGCGCGGTGACGAGGAGCCG
CGGTCGCCGCAGATTCTGAAAGTCACCTTCTGTGGGTTCCTGTGAGAGCAGATGTTGGGGAGGT
CTTCAACACTCCTCTGAGGAGGGAAGTCAACAGACAGCACCCAGCCGGGGGCTCTTGAAGGGAG
CCGTCACGGGTTTCAGAAGATGACCATAAAAAAGTGAAGAAGTTACATTTCTAATATGACACTT
GGAAGTTAGTGACTGCTTACCACATTTTCATGAAAATAAAATGACTTAGAGGCTTTGAAGGCTT
ATGATGTCATCGGTTTCAACAGAAAGCAAACTCCAGCAGGCTGTGAGTCTGCAGGGAGTTGACC
CGGAAACATGCATGATCGTATTTAAGAACCACTGGGCACAGGTTGTGAAAATCTTAGAGAAGCA
TGACCCCTTGAAGAACACCCAGGCAAAATATGGGTCCATCCCCCCGGACGAGGCCAGCGCCGTG
CAGAACTATGTAGAGCACATGCTGTTCTTGCTAATTGAAGAGCAAGCCAAGGATGCGGCCATGG
GGCCGATTCTGGAATTCGTGGTCTCTGAGAACATCATGGAGAAGCTTTTCCTGTGGAGCCTGAG
ACGGGAGTTTACCGATGAGACTAAAATGGAGCAGCTGAAGATGTATGAGATGCTAGTCACCCAG
TCGCACCAGCCCCTGCTGCACCACAAGCCCATTCTGAAGCCTCTGATGATGCTGCTGAGCTCTT
GTTCAGGCACGGCCACCCCTGCCGTGGAGGGGAAGCTGGTGGTCCTGCTCAATCAGCTCTGCTG
CATCCTGGCCAAAGACCCGTCCATCCTGGAACTCTTTTTCCACACCAGTGAGGACCAGGGGGCT
GCCAACTTCCTCATCTTCTCCCTTCTGATCCCCTTCATTCATCGTGAGGGGACAGTAGGCCAAC
AAGCGCGGGATGCTTTGCTCTTTATCATGTCCCTCTCTGCTGAGAACAGCATGGTGGCCCACCA
CATCGTGGAGAATACCTACTTTTGTCCAGTGCTTGCCACCGGGCTCAGCGGGCTCTACTCTTCC
CTGCCCACCAAGCTGGAGGAGAAGGGCGAGGAATGGCACTGCCTGCTGAAGGACGACTGGCTCC
TGCTGCCGCCCCTCGTGCAGTTCATGAACTCCCTGGAGTTCTGCAACGCCGTCATCCAGGTGGC
TCACCCCTTGATTCGCAATCAGCTTGTCAGTTACATTTACAACGGATTCCTGGTGCCTGTCTTG
GCCCCTGCTCTCCACAAGGTGACTGTGGAGGAGGTCATGACCACAACTGCCTACCTGGACCTTT
TCCTGCGCAGCATCTCCGAGCCAGCATTACTTGAGATCTTCCTACGGTTTATCCTGTTGCACCA
GCACGAGAATGTCCACATTCTAGACACTCTCACCAGCCGAATCAACACCCCATTTCGGCTCTGC
GTGGTGTCCCTGGCGCTGTTCAGAACTCTCATCGGTTTACATTGTGAAGATGTGATGCTACAAC
TAGTTTTAAGGTATCTGATCCCCTGCAATCACATGATGCTCAGTCAGAGGTGGGCCGTGAAGGA
AAGAGACTGCTACTCCGTGTCTGCGGCCAAGCTTCTCGCCTTGACCCCTGTCTGCTGCGCCAGC
GGGATCACACTGACGCTTGGGAACCAAGAGAGAGATTATATTCTGTGGTCAAAGTGGACGCATG
ATGGCTCAGGGCCCGGGGAGCATCCCCTGCTCGCCCCTGCGCCCGCGGCCTGCATCGTGGAGTA
CGGCAAAGCCCTGGACGTCAGCTACCTGCAGTACCTGTGGGAGGCCCACTCCAACATCCTGCGC
TGCATGCGGGACTGCCGCGTCTGGTCGGCACTCTACGACGGGGACTCCCCGGACCCCGACACCT
TCCTGCAGAGCGCAGCCGAGGAGAGCGCCTGCCCGGCCGCCCACCTGGGGGCAGGGGGGCCCCA
GCCGGCCGCAGCCAAGGACAGGGGCCAGACGGAGCTGGAGTGGGACGACAGCTACGACACGGGC
ATCTCCTCGGGGGCTGACGTGGGCTCCCCGGGGCCTTACGACGAGGCGGAGACTTCCGGCGCCC
CAGCCCCCGTTGACCCCCCGAAACACATCCAGGAGATGAAGCGGAACGCCATCCAGCTCTTCAG
AGGCCCCTACATCGAGGAGTCGGACTTCCAGGACGACGTGATGGTGTACCGGCTCTGTGCCCAG
AAGGACGCCGAGGACGCCGCGGGGTCGCAGCAGCAGCCCGCGGGGCCCCCAGCCCAGGCCCAGC
CTGAGGCGCAGCCGCCCCCAGTGAACAACGGCCCCCTGCCCGGCCCCCAGCCCGATGCGGAGGA
GGAAGAGCAGAGGGACAGGGCTGACCCCCTGCCGGACGCGTCCAAGGAGCCAGAGCAAGAGAGC
CAGCCTGAAGTCGCCCCGGAGTCGCACTCGGGGTCAGCAGCCCCGGCCCCCGAGGCCGAGCACA
GCCCCGACCCGGCCGAGGTCAGCCCCGGGAGCGAGGATTTCATGGCCCACTACGACCAGATCAT
CAGGGAGCTGGACTCGGGCCCCGAGAGCCTGATGGACCAGCCTGATGGAGCCGCGCCCGACCCC
TTGCTTCTCACAAAGGGGCATGAAGGAAGGGGAGAGGAGGGCCATGGAGAAAAGGGGGAGGAGG
AGGAAGAGCCGCAGAAGGACCTCGAGGAGGACGAGGAGGACTTCGACTCTTTCATGGCCGAAGC
TCCTTCCGAGCCTGTGTGCTCCCCATTTGGGTTGAGAGAGGAGCCGGCCTGTGCCAGGCCCCAA
GCCGTGAGGACTCAGAGCACCCCGTTCACAGGCCCATTCATCAGCGTGGTCTTGTCAAAGCTGG
AGAACATGCTGGAGAACTCTCTGCATGTTAATTTGCTGCTTATTGGGATCATCACGCAGCTAGC
CAGCTACCCGCAGCCGCTCCTGCGCTCCTTCCTGCTCAACACCAACATGGTCTTCCAGCCGAGC
GTGCGCTCTCTCTATCAGGTCCTTGCATCTGTGAAAAACAAGATTGAACAGTTTGCCTCGGTGG
AGAGAGACTTCCCAGGCCTCCTCATCCAGGCCCAGCAGTACCTGCTCTTCCGGGTGGACATGTC
TGATATGACCCCTGCCGCACTAACCAAAGACCCCATTCAGGAGGCTGCCAGGACAGGCAAGAAC
TTTTTGGATGGTCCCCCAAGAGTGCTTCAGCCCTTCCTGACCAACAGAGCCAAGGTGGTGGGGG
CACCCCCAAACCTGCCCCTGCCCGTGAGGAACACCATGCTGGCCGCCGCCCTCTTCCCCGAGTT
CCTGAAGGAGCTCGCCGCCCTGGCCCAGGAACACTCCATTCTGTGCTACAAGATCCTGGGTGAC
TTCGAGGACTCATGTTGTTAGCTTTTTAAAAAATTGTTATTTTAATAGAGATTCTTGTTTTATA
AGGTTAGAGTGTCTAGACTGAATGTTCAATGCAAAGCTGCTTACCAGAAACTTCTACTTTGATA
TTTCCTGACGATACTTGATTTGCGGGGAGGGGTCTTCTGGCCTCCTCCCTGGCCGGGTCTCCCC
CCTCACCTATGGAATGTGAGTCTCATGAGCTGATGGCTCCCTTGGCGGGTTTTCTTTGCTCAGT
TTTCCTCCCACTTGGGGTTGTCATTTCCCGTCCCTTGGAGTCATGCTGTGTGCAGCTCAGATGG
AGCAAAGCAAATATTGGGGTTCTGTGATCCCCAGAGGTGCCCCGTGGCAGAGGGCCAGCCCTGG
GGCAGCACGTGAAGAAGGCGCAGTTGCCACCCATGGATGCTCGTGCTGCCAGTGTTTGGCTTCC
ATTTTATAAAAGGGAAGAATAAAGACGGAGCTCCTCTCACCTCCGTCACACGGCACGTCATATG
TCCCTCTGCATTTTACTTAGGACTTGTGTCCTCTCAACATATGTTGCCTTATGGTGCAAGAAAA
CCCATCTCAGCTGTCCGCCTGGGAAGTCACGTGTAGGTGGGGAGAATTTGGAATGCAGGGAATT
ATTTCTTGTTGCTTTTGTTGATCGTCACGATCACACCACCTGAACACGGACGATAGCCTTACTT
TAGTAAGATTTGCACAGAATGAAGTCTACCTATGCAAACGGTGACCTTAGTTTCTAGGAGTTGG
AGCAGACGAAGAAATGCATCTCATACCTTACGCAGGAAGACAGCTGTCATTGTTTTATGAAAAC
AAATGTTAACTTGTGAAGCTCTTCCATAGTGGGATTTTTTTTAGGGGGAGTTGGAGTTTGGAGT
TGGGGAAGCAAAAAATAAGGGTAAGCTTAATAGAACCATAAAGATGCTGGTCATTATTTTGAAT
TGTTTGCTTTTGTGAACGCATTGCACTTTATGGATGTAAGTGGGCCCCGAGCAGCCTGCTTTGG
GAGCTGGGATGTAAATGCACACAGGTCACAGGGAGCCCGCAAAGCCAAGCATCTGCCTGGGACT
CACTGCACAGAAATGCTGGCTTGTGAGTAAGGGGCTTCGTGATTGGCCCTCTGTGCTGCACTAG
AGCTTCTTTCTGCTTCTCACCCTACTGCAAGAGGCATGATTGTCCTCAGGGCCACGGCCACCCT
GAGCCACCACCAAGAGGGAGATGCACAGTAATTGTGGGCTAAAAATGAGACAATACACAGCTGA
TATTTATAGAGGTGAAAACCCACTCCCCTCTGCTGTGGGCCCAGTTCTACAGGAGAGAAGCAAA
TAAGGATGAGCCTCTCTGCCTGTTTGGAGGGAACTTGAAAGTCCTGACTCCCTTTGTTCCCTCA
GGGGGTATCTGCAGAGCCCTGCAGGCATCCACGGGCCCAGGGGTTGTGCCTCCAGAGCACCAAT
TTGTCTTAATCTGGCCCCTTACATAGAAGGAAAATGGAGGAGAGAGTCACTGCAGAGCAGAGGG
CACCCTTTTGTGTTACAGGGATCCTGAAGCAGCTCTGAATTGAGAGACATGGCGAGGTGGCCCA
GGGAAGAAGACACGAGGCCATCTGGCCTGGGCTGGGAGAGCTGGTAGGCTCCTGGCTGGGAGTG
TTTCATAGTCTAAGCAAAACACAAAGTTAGCTGTTCAGGGCACATCCTGACTTCACGTTTGTTG
CTTTGAACGATGGTTCTCTGGCTCCTGACGCCAAGTTGTGTTTTGTACAGCCCAAAAGTCTTCA
TCAGGAATGAAGGTGGAGAAGGAGGACCAGTTAAAGATGGAATTTAAGCTGTAACTTATTACCC
TTGAACTTTGTTTTGCGTGCGTATTTATCCGATTATTGGACTCTGCAGGTCACATACTGCTGGA
GCTACATCTGGAAATGGTATTCTTGGCTTTTGGGTTTGGTACTCCTCTCTGCTGGTGGCATTGA
CTCTTAAGTCTGTATTTCATTATAGAATGCCACAGCCACCTCTGTGGAAGGTGCCCACTGGGAA
AGAGAGTGACTGACTTTGTGCCTTTTCAAAATTTTTCCAGTATGTACAGACTTACTTTAAAGGA
GGACAGAGATGACTGGAGCCTAGGGTGAGGGGCAGGAAAATTAAACTTCTCATGGAAACAAACT
TACATGATGAGATGCCTCCTTCCTTCCCTGTTTGCAGTTGGAAACTGGGATGTGAATCTGCTAC
AGTTCTTCAGATGGTTGTGTTCAGGGTTTTATAAAATTAAGTAAAAAACTGACTGGGACATAGA
GCATCAGAGAACCCATGTGGCTGAGGGGCATAGCCAGGAATAGGCTATTCGGGGAATGGTGTAG
ACTGGTGGGAAGAAAAACGACAGAGGCCTGAGCCACGAACAAAGAGCAAGTCCTGAAAGATGTT
GAGATGTGAACCTTGTTCTAGGAAGACAACAGAGAGCAGGCAGGTGAGGGGAGGAGCTTCTTGG
TAGGAAAAAATCAAAGCAGTGGAGTAGAATGTTTCAGTTCTAAATTAATTAAACAGGTGAGGTC
CTTAAAATACTATTTCTCTTTGGTAATGAGTTTTGGGAAATTTTAGATAGATTTTAAAATGTGG
CCCAGGGGCATGGGTCCTTTCCTGCGACAAGCCCCACATCACTGCTTGTTGGAGAAAAAGTGGG
CACAGCCCTTTGGAGCAGCCTGGCCTGGCGTCACTGTGTCTAGCCCGATGCCTGGGCAGGGACG
GCAAGTCAGGGATTCCTGGAACAGCACGACATTAGCCTTAATTCATAATTCAGGGTCTGATTTA
AAGTTCTCAACCGAGTGAGTTTATGATTCAAATTATGTGAGACCACTGGGATATTTAAAATTGA
TTTTTGAACATGACCAGGTAAATGTAAAATTTTAAACAAATTCCAGCTTATGTTTAGGCTAAAA
CCCAGCTTCATGGGGGTCAGTTAGAGTTTCCGGCCATGAAGTGGAGGTGCTGGAGTTCACTAGA
GCTGTGACTTTCTGTGTCACTATATACGTCCTTCCCCAGCACTTAGAGGCATGGTGAAATTAGA
CCCATTTTGTTCATCATTGTGTTGGAAGATACCTTAACTGGCTGAGGCTGGAATTGTGTCACTG
TTAGGAGGACACATTGTGTACTTTCACAGGCCTCAGAGGTGGCTTCTGTGTAGGTCAGATGTAG
TGGATTTTCTTTAAGGCATCTGGGCTAGGGTGTCGGGAAAGCGTCCTCTTGTGAAGACAATCTA
GAAACAAGATACGTGGCTGCTTGGGTTTCCCATGTAATTTGGGCAGCCAGTGGTTGGAAGCTGT
CGTTGATGTCTGAATCCCTGTGGCTGCAGTGGTCATGCGGGATATTTCCTGATCTGTTGGAAGC
TTAAGGCTGTGCATGGACTGCCCATTCTGGGTCAGTCTGTCTGTTGCTTTCAGTGGGGAAGCAC
TGCCCCAGGAGGGGTAGGACCCCTCACCGTGTGCTGTTAAATCTGTCTATGCTCCGGTTCTCTT
CTAGGGGCAGTTCAATTTGACTGCTAATTACCAGCCCTCTGTTTACTGCAGTGGCTGTCACGCC
TGCCATTTTTATGAAACACTTTATTGCAGGACAGCTATTACTGCACGTGCTACTTAGAGTCACT
GGCCCAGGCCAGTGTGACATATGGGTTGCTGTGAACCTCAGCCAGCTCTGAGGTCCTATCTTTC
CCTGAAGCAGTGGTCCTCTGGTACCTTAAGTCACATCAGCTTTGAGTCATTAAGAAGCCACCCT
GGTCTCTTGCTTCAGCCTTCAGCCTGTAAATCACACGTGCTAATTCCCCATCAAATAACAGCTT
AAACAGTATGTCCAACCAGTTTAGGCTTCACCCTTAAGTCAAATCAGTGAGGGACATTTTAAGA
GAATGGAGTTGACATTCTTTATTATTATTATTCTTTTTGAATGACCATCATAAACCTAATGCTT
CAGAAAAAGCTCTTGTAAGACAAAGAATGGTTTTTGAGATAATTTTGCTTCAGTAAATCCTCTC
TGCGTTCAGACATTTATTAGGTCACTACTTGTTTTGGAGCACAGATTATCCTGGCAGCTCATTA
ACTGGATAAACAGGGCTTTAGCATGAGATTTTCAGAGAGGTTCCTTAGGGAAAAGAAGAACCAC
GACAAGGTGGGGGGAAGCCTTCAGATCTTTAGCCTTTGCTCTCAGAACCCTCCGACTGATGACT
TTAGACAGGCCGACCTTTCCTAGCCTAGGGGTCGCTGTGAGTTGCGTTCTTGCCTTATGAGATG
TGGTAAACCTAACCGTCACCCACACCAGTCACAAGACCAGCACCAGGATTCCGTCAGATGAGTT
CAATATGCATTTTAGGCATCTTTGGGGGAGCTCAGATTTACTGTATCACTTCAGAACCTGACAG
AGGTGATGGAAGCTCTTAGGCCAGATTATAAATTTCATGGAGCAGAGGTTGTGTGAGTCTATGC
ACCTGACATTTTATTGGAATAAGTAAGGCCCTCCTGTAACAGGACTCTTGTCCTGCAGATGTTT
TGAAGGAGGGACTATGGTGTCAGTGGTCTTCCTTAAAATTTTGCCCAGCCATCCGACTAAGGAA
GACAGTTTCATTCAGATGCCTCCCAACCCACTGACCCTCCCAATCCAGGGTCAGCTCTGCTGAC
AATCCACAAATACATTCCCTAAAACCTGCAGGAGCAGCCCAGCAGCCACCCCCGTGCTGCCGTT
GGTAACGGGGAGATGAGATGCCTTCCACATACAGTGGGCATTTTTTCTCCCTGGTAGCCACTGT
GTGGAGTCCTTGAAATGATGCTGCTGAATTCAGTCTAAATGAAAAATAGACATAAGTTGTGGGT
CATGGCCATGGTATGTATTAACTAACCTGCTGCTGAAGAGGAAGGTATTCACTCTCAGAAATTT
CATGGCTTTCTTCCAGATTGGCAATAACTACTTAAAAGAAAAAAAAAAGTGGATGGAGGGGGTT
CGGCTAAAACGTCCTTACCTAGGTGTAACGATCTCAATTTTTTCCATTTACACCCTTGAGAGAA
ACAGAAGTCAGTTTGGACGCGTGAGCTCAGATAGATACAAAAAGCTGCCTTCTAGACCCAGAAT
TGAAAATCCTAGGCGTTGGTGGCCTCTTTTACAAAGGGGCCTGACAAAGTTTCCCAAGTTAGGT
GAACTTTTACTGAACACTCCCTGTGCTAGGTCGAGTGCTGAGTGCCGGGCTAACATGCCCCTTC
CCACCAGGACCAACCAGCCAGCGCCAGGAGGCATCAGAACACGTTGGGGCCTGACCAGGCAGAC
CTGGTTCAGGCTGTCCCTAGGGAGAGCCAGTTTTCCAACACATTCTCCTCCCAGAGCCTCAGCA
TTAGACACCCCACCTACAGGTGTGTGGATTCCAGTGACAGATGGCAATGGCTTCAGCTACCATG
CCAGCTCATACATTTTAATGAGATTTCCCCTAAATGGTACAAACAGAACCAGTCTAAATTCACA
CTCAGGCAAGAATGTAAAATTGCATCTCACTGAGGCCCGAGTAGGAGCAGAGCCGCACTTCGTG
TGTTTCTTAGGGTGTTATGTAAACACCTTTCCAGTAGCTTGGGTTCCAGTCAGAGCTGTGCTTT
GATTCCACCCCCACCCTCACCCCCACCCGCTGATGTCAACCAAGTCTGGTTTTCAAAAGCTGAC
AGTCCATTATCAGAGCTGGGCGGAAATTGGCCTTGTGAAGTCCCACGTCCTAACTGTGGCCCCT
TTCCCCTGGAGTCACCCGTCCACAGGCGGTTTTCCCTTGATGTCATAGTTTTGGTGTCCTGACT
TGGCAGTGCCCCTGTTTAAATAAGTCCATGATTTGAAATGGTCTGAAAAGATCCTTCAGTGCTT
TCTGTAAGGTTTGGTCACCAAGAAGTCAGAACTTTTTGGTAAAAATGCAGCTTATGAAATAAAA
TGAGCATCACTAGTTCTTATAAAATAAAGGTCTTGCTGGATGAAGACCTCAAAGCAGCCATGAA
ATGATGGAATTGGGGACCTGCAGAGTGAGATTGGTGAGAATCACTTCAGTATTGCAACAGTGTG
GGTTGATGGCTACCTGGGCGAGGTTCATATTCTTATTGTTCTAAGTCACTAATTTCTTAAAAAT
ATATATATATTTTAAAAAATGTTACCTCCTTTTCACTTGTCTAAAAGCACACAACTGGTGTCCT
CTCTTTGCCTTTCTGGCTGGGCAGGGCATTGCTCA

hide sequence

RefSeq Acc Id:

XM_040293192 ⟹ XP_040149126

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405301	40,891,197 - 41,122,492 (-)	NCBI

RefSeq Acc Id:

XM_040293193 ⟹ XP_040149127

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405301	40,886,253 - 40,981,646 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005337656	(Get FASTA)	NCBI Sequence Viewer
	XP_040149126	(Get FASTA)	NCBI Sequence Viewer
	XP_040149127	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000016500.2
	ENSSTOP00000022212.2
	ENSSTOP00000031295.1
GenBank Protein	KAG3276092	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005337656 ⟸ XM_005337599

- UniProtKB:

I3NCW5 (UniProtKB/TrEMBL), I3MWK5 (UniProtKB/TrEMBL), A0A287DCK0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MMSSVSTESKLQQAVSLQGVDPETCMIVFKNHWAQVVKILEKHDPLKNTQAKYGSIPPDEASAV
QNYVEHMLFLLIEEQAKDAAMGPILEFVVSENIMEKLFLWSLRREFTDETKMEQLKMYEMLVTQ
SHQPLLHHKPILKPLMMLLSSCSGTATPAVEGKLVVLLNQLCCILAKDPSILELFFHTSEDQGA
ANFLIFSLLIPFIHREGTVGQQARDALLFIMSLSAENSMVAHHIVENTYFCPVLATGLSGLYSS
LPTKLEEKGEEWHCLLKDDWLLLPPLVQFMNSLEFCNAVIQVAHPLIRNQLVSYIYNGFLVPVL
APALHKVTVEEVMTTTAYLDLFLRSISEPALLEIFLRFILLHQHENVHILDTLTSRINTPFRLC
VVSLALFRTLIGLHCEDVMLQLVLRYLIPCNHMMLSQRWAVKERDCYSVSAAKLLALTPVCCAS
GITLTLGNQERDYILWSKWTHDGSGPGEHPLLAPAPAACIVEYGKALDVSYLQYLWEAHSNILR
CMRDCRVWSALYDGDSPDPDTFLQSAAEESACPAAHLGAGGPQPAAAKDRGQTELEWDDSYDTG
ISSGADVGSPGPYDEAETSGAPAPVDPPKHIQEMKRNAIQLFRGPYIEESDFQDDVMVYRLCAQ
KDAEDAAGSQQQPAGPPAQAQPEAQPPPVNNGPLPGPQPDAEEEEQRDRADPLPDASKEPEQES
QPEVAPESHSGSAAPAPEAEHSPDPAEVSPGSEDFMAHYDQIIRELDSGPESLMDQPDGAAPDP
LLLTKGHEGRGEEGHGEKGEEEEEPQKDLEEDEEDFDSFMAEAPSEPVCSPFGLREEPACARPQ
AVRTQSTPFTGPFISVVLSKLENMLENSLHVNLLLIGIITQLASYPQPLLRSFLLNTNMVFQPS
VRSLYQVLASVKNKIEQFASVERDFPGLLIQAQQYLLFRVDMSDMTPAALTKDPIQEAARTGKN
FLDGPPRVLQPFLTNRAKVVGAPPNLPLPVRNTMLAAALFPEFLKELAALAQEHSILCYKILGD
FEDSCC

hide sequence

RefSeq Acc Id:	XP_040149127 ⟸ XM_040293193
- UniProtKB:	I3MWK5 (UniProtKB/TrEMBL), I3NCW5 (UniProtKB/TrEMBL), A0A287DCK0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040149126 ⟸ XM_040293192
- UniProtKB:	I3MWK5 (UniProtKB/TrEMBL), I3NCW5 (UniProtKB/TrEMBL), A0A287DCK0 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSSTOP00000016500 ⟸ ENSSTOT00000026085

Ensembl Acc Id:

ENSSTOP00000031295 ⟸ ENSSTOT00000037851

Ensembl Acc Id:

ENSSTOP00000022212 ⟸ ENSSTOT00000023640

Protein Domains

FHF complex subunit HOOK-interacting protein C-

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000026038	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000023640.2	UniProtKB/TrEMBL
	ENSSTOT00000026085.2	UniProtKB/TrEMBL
	ENSSTOT00000037851.1	UniProtKB/TrEMBL
InterPro	FHIP_C	UniProtKB/TrEMBL
	FHIP_KELAA_motif	UniProtKB/TrEMBL
	RetinoicA-induced_16-like	UniProtKB/TrEMBL
NCBI Gene	Fam160a1	ENTREZGENE
PANTHER	FHF COMPLEX SUBUNIT HOOK INTERACTING PROTEIN 1A	UniProtKB/TrEMBL
	PTHR21705	UniProtKB/TrEMBL
Pfam	DUF5917	UniProtKB/TrEMBL
	KELAA	UniProtKB/TrEMBL
	RAI16-like	UniProtKB/TrEMBL
UniProt	A0A287DCK0	ENTREZGENE, UniProtKB/TrEMBL
	I3MWK5	ENTREZGENE
	I3NCW5	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	I3MWK5	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-02-10	Fhip1a	FHF complex subunit HOOK interacting protein 1A	Fam160a1	family with sequence similarity 160 member A1	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar