Akip1 (A-kinase interacting protein 1) - Rat Genome Database

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Gene: Akip1 (A-kinase interacting protein 1) Ictidomys tridecemlineatus
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Symbol: Akip1
Name: A-kinase interacting protein 1
RGD ID: 12625391
Description: INVOLVED IN substrate adhesion-dependent cell spreading (ortholog); ASSOCIATED WITH COVID-19 (ortholog); diastolic heart failure (ortholog); FOUND IN nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: A-kinase interacting protein 1, transcript variant X1; A-kinase interacting protein 1, transcript variant X2; A-kinase-interacting protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494753,107,844 - 53,117,244 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365289,141,744 - 9,151,230 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365289,141,824 - 9,151,224 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Akip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494753,107,844 - 53,117,244 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365289,141,744 - 9,151,230 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365289,141,824 - 9,151,224 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AKIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38118,911,189 - 8,920,079 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl118,911,139 - 8,920,084 (+)EnsemblGRCh38hg38GRCh38
GRCh37118,932,736 - 8,941,626 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36118,889,277 - 8,898,202 (+)NCBINCBI36Build 36hg18NCBI36
Celera119,052,466 - 9,061,391 (+)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef118,603,005 - 8,611,932 (+)NCBIHuRef
CHM1_1118,931,634 - 8,940,568 (+)NCBICHM1_1
T2T-CHM13v2.0118,995,274 - 9,004,239 (+)NCBIT2T-CHM13v2.0
Akip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397109,302,885 - 109,311,393 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7109,302,897 - 109,311,396 (+)EnsemblGRCm39 Ensembl
GRCm387109,703,678 - 109,712,186 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7109,703,690 - 109,712,189 (+)EnsemblGRCm38mm10GRCm38
MGSCv377116,847,251 - 116,855,695 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367109,494,914 - 109,503,358 (+)NCBIMGSCv36mm8
Celera7109,677,893 - 109,686,337 (+)NCBICelera
Cytogenetic Map7E3NCBI
cM Map757.44NCBI
Akip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81173,169,520 - 173,178,445 (+)NCBIGRCr8
mRatBN7.21163,734,730 - 163,743,648 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1163,734,798 - 163,743,648 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1172,071,461 - 172,080,275 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01179,257,507 - 179,266,321 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01171,939,601 - 171,948,421 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01174,330,628 - 174,339,494 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1174,330,695 - 174,339,494 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01181,316,209 - 181,324,845 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41167,324,919 - 167,333,739 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11167,435,803 - 167,443,587 (+)NCBI
Celera1161,634,344 - 161,643,153 (+)NCBICelera
Cytogenetic Map1q33NCBI
Akip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541424,667,273 - 24,674,960 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541424,667,718 - 24,677,556 (+)NCBIChiLan1.0ChiLan1.0
AKIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2911,346,257 - 11,355,392 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11111,305,172 - 11,314,309 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0119,040,057 - 9,049,095 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1118,781,710 - 8,790,267 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl118,781,702 - 8,790,267 (+)Ensemblpanpan1.1panPan2
AKIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12132,279,415 - 32,291,788 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2132,279,431 - 32,306,209 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2131,847,704 - 31,860,431 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02133,153,088 - 33,165,817 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2133,153,206 - 33,161,104 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12132,422,406 - 32,435,154 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02132,588,240 - 32,595,254 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02132,882,367 - 32,895,095 (+)NCBIUU_Cfam_GSD_1.0
AKIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9531,544 - 537,679 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19513,383 - 537,779 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29581,307 - 606,201 (-)NCBISscrofa10.2Sscrofa10.2susScr3
AKIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1155,886,631 - 55,895,219 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl155,885,031 - 55,895,158 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038153,574,315 - 153,582,987 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Akip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247661,061,309 - 1,072,578 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247661,061,023 - 1,069,051 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000024633   ⟹   ENSSTOP00000021255
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365289,141,744 - 9,151,230 (-)Ensembl
RefSeq Acc Id: XM_005326821   ⟹   XP_005326878
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494753,107,844 - 53,117,244 (-)NCBI
SpeTri2.0NW_0049365289,141,824 - 9,151,224 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005326822   ⟹   XP_005326879
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494753,107,844 - 53,117,244 (-)NCBI
SpeTri2.0NW_0049365289,141,824 - 9,151,224 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005326878 (Get FASTA)   NCBI Sequence Viewer  
  XP_005326879 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000021255.2
GenBank Protein KAG3285763 (Get FASTA)   NCBI Sequence Viewer  
  KAG3285764 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005326879   ⟸   XM_005326822
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005326878   ⟸   XM_005326821
- Peptide Label: isoform X1
- UniProtKB: I3NA58 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000021255   ⟸   ENSSTOT00000024633


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000022547 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000024633.2 UniProtKB/TrEMBL
InterPro AKIP1 UniProtKB/TrEMBL
NCBI Gene Akip1 ENTREZGENE
PANTHER A-KINASE-INTERACTING PROTEIN 1 UniProtKB/TrEMBL
  PTHR14330 UniProtKB/TrEMBL
UniProt I3NA58 ENTREZGENE, UniProtKB/TrEMBL