Nrip3 (nuclear receptor interacting protein 3)

Gene: Nrip3 (nuclear receptor interacting protein 3) Ictidomys tridecemlineatus

Analyze

Symbol:

Nrip3

Name:

nuclear receptor interacting protein 3

RGD ID:

12625320

Description:

ENCODES a protein that exhibits aspartic-type endopeptidase activity (inferred); INVOLVED IN proteolysis (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

nuclear receptor-interacting protein 3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	53,040,357 - 53,060,926 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936528	9,074,294 - 9,094,906 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936528	9,074,348 - 9,094,906 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

proteolysis (IEA)

Molecular Function

aspartic-type endopeptidase activity (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Nrip3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	53,040,357 - 53,060,926 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936528	9,074,294 - 9,094,906 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936528	9,074,348 - 9,094,906 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NRIP3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	8,980,576 - 9,004,505 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	8,965,682 - 9,005,288 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	9,002,123 - 9,025,548 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	8,960,953 - 8,982,124 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	8,960,965 - 8,982,124	NCBI
Celera	11	9,121,783 - 9,145,262 (-)	NCBI		Celera
Cytogenetic Map	11	p15.4	NCBI
HuRef	11	8,672,433 - 8,695,917 (-)	NCBI		HuRef
CHM1_1	11	9,001,057 - 9,024,541 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	9,064,768 - 9,088,208 (-)	NCBI		T2T-CHM13v2.0

Nrip3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	109,357,263 - 109,380,752 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	109,357,262 - 109,381,232 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	109,758,056 - 109,781,545 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	109,758,055 - 109,782,025 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	116,901,570 - 116,925,059 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	109,549,233 - 109,572,722 (-)	NCBI		MGSCv36	mm8
Celera	7	109,732,201 - 109,755,690 (-)	NCBI		Celera
Cytogenetic Map	7	E3	NCBI
cM Map	7	57.49	NCBI

Nrip3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	173,224,532 - 173,249,829 (-)	NCBI		GRCr8
mRatBN7.2	1	163,789,738 - 163,815,036 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	163,789,738 - 163,815,600 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	172,126,168 - 172,151,269 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	179,312,214 - 179,337,315 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	171,994,346 - 172,019,545 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	174,385,424 - 174,411,141 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	174,385,424 - 174,411,141 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	181,370,497 - 181,396,068 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	167,380,328 - 167,405,899 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	167,493,626 - 167,519,079 (-)	NCBI
Celera	1	161,688,393 - 161,713,004 (-)	NCBI		Celera
Cytogenetic Map	1	q33	NCBI

Nrip3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955414	24,716,773 - 24,738,207 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955414	24,716,773 - 24,737,145 (-)	NCBI	ChiLan1.0	ChiLan1.0

NRIP3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	11,416,436 - 11,437,423 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	11,374,777 - 11,395,764 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	9,110,113 - 9,131,087 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	8,850,948 - 8,872,148 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	8,850,948 - 8,871,413 (-)	Ensembl	panpan1.1		panPan2

NRIP3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	21	32,331,161 - 32,354,264 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	21	32,334,015 - 32,354,208 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	21	31,899,504 - 31,923,138 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	21	33,204,909 - 33,228,544 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	21	33,204,909 - 33,228,033 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	21	32,474,153 - 32,497,778 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	21	32,640,669 - 32,664,284 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	21	32,934,171 - 32,957,790 (-)	NCBI		UU_Cfam_GSD_1.0

NRIP3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	55,796,371 - 55,825,723 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	55,808,011 - 55,828,537 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	153,495,796 - 153,513,793 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Nrip3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624766	1,112,369 - 1,134,446 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624766	1,112,365 - 1,134,442 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005326818	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000002505 ⟹ ENSSTOP00000002240

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936528	9,074,294 - 9,094,906 (+)	Ensembl

RefSeq Acc Id:

XM_005326818 ⟹ XP_005326875

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	53,040,357 - 53,060,926 (+)	NCBI
SpeTri2.0	NW_004936528	9,074,348 - 9,094,906 (+)	NCBI

Sequence:

show sequence

GCAGTGCTGGAGCAGCTCGAGGCTGAGGGCGCTGGGTGCCGGGAGCCGCGAGCCGCGGGGCCCC
ACGGCCGCGGGCGCCTCAGCAATGTTTTACTCAGGGCTCCTCACGGAGGGCGGCCGCAAGGAGA
CCGAAATGCGGGAGGCGGCGTCGCTTCGGCAGCAGCGCCGGATGAAACAGGCCGTGCAGTTCAT
CCACAAGGACTCCGCTGACCTACTGCCCCTGGATGGCCTCAAGAAGCTGGGCTCGTCCAAGGAC
ACGCAACCTCATAACATTCTGCAGAGGCGACTCATGGAAACCAACCTGTCTAAGTTCCGAAGCA
GTCGTGTACCTTGGGCCTCCAAGACCAACAAATTCAATCAAGCTAAGTCTGAGGGGCTAAAGAA
GTCTGAGGATGATGATATGATTTTGGTTTCTTGTCAGTGTGCTGGAAAGGATGTGAAAGTCTTG
GTTGACACAGGCTGTCAATACAATATCATCTCCTCAGCCTGTGTAGACAGATTGGGACTCAAGG
AGCATGTCAGATCTCACAAGCATGAAGGAGAAAAGTTTTCTCTACCCCGACATCTCAAAGTGGT
GGGCCAGATAGAGCACCTAGTGATCACAATGGGCTCCCTGCGCCTGGACTGCCCAGCAGCTGTG
GTTGAGGACAATGAGAAAAACTTGTCTCTTGGTCTCCAAACTCTCCGATCCCTGAAGTGTATCA
TAAATTTGGATAAGCACCGGCTGATCATGGGGAAGACAGACAGGGAAGAAATCCCTTTTGTGGA
GACAGTTTCTTTGAATGAAGACAACACTTCAGAAGCATAACTACAGTCTATAGCATATCTGAAC
GTGTGCACACACACCAGGTTGACAGATTGAGAAAACTGGGTTTGAACCAAATGCTGTAGCAACT
TGCTGTGGACCAAGTCCTTCCCTCTAATAGATGCTCCAGGGACTCCTTCCCACTCACACCTTTA
TAGACTACTGTCTGTGCTTAGAGATCTTGTCTGGTTACAGCCATTGTTTTCTACTTCTTTGATC
ACTTAATTTATAGACCCTTTTTGACACTGCCAGGTCTCCCTTGTGGCCTATTTCTCTGCTTCTT
CCAAGAAATTAATTAGTTAAGTGTAGGGGCTGCCAGGTTGTATTTCTTCATAGATACACTTGCT
TTTCCTATAGCTAAATGTGTAACAAACAGGAACCTGACTTTTATCTCTTTCAGAGATATAGGAA
ACCTATGTATTGGAATTAGAATCCCTTCTAATTAATTGATTTATCAAGTATGAATTGATGGTAA
AGAGCCCAGATAAGTAATCTAGTCCAAACCTTGATTTAAAGGTCCAGAGAGGCCAGTGAATTAT
CTAAACTTATATTTAAAGTCAGTGACAGAAGGGACCTAAAATTCAAACCTGATTTCTAAGCTAA
AGCTCCTGTGCTGACTCATTTGTTTTCAAGCCTTAATGGAAAGCAAAGAGGTATGTGT

hide sequence

Protein Sequences


Protein RefSeqs	XP_005326875	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000002240.3
GenBank Protein	KAG3285759	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005326875 ⟸ XM_005326818

- UniProtKB:

I3M0J8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MFYSGLLTEGGRKETEMREAASLRQQRRMKQAVQFIHKDSADLLPLDGLKKLGSSKDTQPHNIL
QRRLMETNLSKFRSSRVPWASKTNKFNQAKSEGLKKSEDDDMILVSCQCAGKDVKVLVDTGCQY
NIISSACVDRLGLKEHVRSHKHEGEKFSLPRHLKVVGQIEHLVITMGSLRLDCPAAVVEDNEKN
LSLGLQTLRSLKCIINLDKHRLIMGKTDREEIPFVETVSLNEDNTSEA

hide sequence

RefSeq Acc Id:

ENSSTOP00000002240 ⟸ ENSSTOT00000002505

Protein Domains

Aspartic peptidase DDI1-type

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000002510	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000002505.3	UniProtKB/TrEMBL
Gene3D-CATH	2.40.70.10	UniProtKB/TrEMBL
InterPro	NRIP_C	UniProtKB/TrEMBL
	Peptidase_aspartic_DDI1-type	UniProtKB/TrEMBL
	Peptidase_aspartic_dom_sf	UniProtKB/TrEMBL
NCBI Gene	Nrip3	ENTREZGENE
PANTHER	ASPARTYL PROTEASE DDI-RELATED	UniProtKB/TrEMBL
	NUCLEAR RECEPTOR-INTERACTING PROTEIN 3	UniProtKB/TrEMBL
Pfam	Asp_protease	UniProtKB/TrEMBL
Superfamily-SCOP	SSF50630	UniProtKB/TrEMBL
UniProt	I3M0J8	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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