Mrpl36 (mitochondrial ribosomal protein L36)

Gene: Mrpl36 (mitochondrial ribosomal protein L36) Ictidomys tridecemlineatus

Analyze

Symbol:

Mrpl36

Name:

mitochondrial ribosomal protein L36

RGD ID:

12620661

Description:

ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN translation (inferred); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 2 (ortholog); dopamine transporter deficiency syndrome (ortholog); genetic disease (ortholog); FOUND IN nuclear body (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

39S ribosomal protein L36, mitochondrial

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	243,997,985 - 244,000,231 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936815	159,295 - 159,916 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936815	159,324 - 161,512 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant dyskeratosis congenita 2 (ISO)

dopamine transporter deficiency syndrome (ISO)

genetic disease (ISO)

intellectual disability (ISO)

mitochondrial complex I deficiency (ISO)

nuclear type mitochondrial complex I deficiency 1 (ISO)

nuclear type mitochondrial complex I deficiency 9 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

translation (IEA)

Cellular Component

mitochondrial large ribosomal subunit (IEA)

mitochondrion (IEA)

nuclear body (ISO)

ribonucleoprotein complex (IEA)

ribosome (IEA)

Molecular Function

protein binding (ISO)

structural constituent of ribosome (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Mrpl36
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	243,997,985 - 244,000,231 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936815	159,295 - 159,916 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936815	159,324 - 161,512 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MRPL36
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	1,798,385 - 1,801,434 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	1,798,385 - 1,801,366 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	1,798,499 - 1,799,951 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	1,851,499 - 1,852,946 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	5	1,851,498 - 1,852,946	NCBI
Celera	5	1,835,163 - 1,836,620 (-)	NCBI		Celera
Cytogenetic Map	5	p15.33	NCBI
HuRef	5	1,780,117 - 1,781,591 (-)	NCBI		HuRef
CHM1_1	5	1,798,128 - 1,799,602 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	1,713,255 - 1,716,322 (-)	NCBI		T2T-CHM13v2.0

Mrpl36
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	73,479,128 - 73,480,297 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	73,476,632 - 73,480,297 (+)	Ensembl		GRCm39 Ensembl
GRCm38	13	73,328,503 - 73,332,178 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	73,328,513 - 73,332,178 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	73,468,457 - 73,469,626 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	73,797,011 - 73,798,180 (+)	NCBI		MGSCv36	mm8
Celera	13	75,658,846 - 75,660,059 (+)	NCBI		Celera
Cytogenetic Map	13	C1	NCBI
cM Map	13	39.71	NCBI

Mrpl36
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	31,794,025 - 31,797,446 (-)	NCBI		GRCr8
mRatBN7.2	1	29,965,481 - 29,968,896 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	29,965,317 - 29,968,807 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	29,767,576 - 29,768,672 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	35,766,496 - 35,767,592 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	29,966,343 - 29,967,439 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	31,261,370 - 31,264,715 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	31,261,370 - 31,262,466 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	1	32,570,296 - 32,570,589 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	32,688,643 - 32,691,941 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	41,265 - 42,361 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	41,269 - 42,317 (-)	NCBI
Celera	17	28,605,519 - 28,606,615 (-)	NCBI		Celera
Cytogenetic Map	1	p11	NCBI

Mrpl36
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955504	890,779 - 891,343 (-)	NCBI	ChiLan1.0	ChiLan1.0

MRPL36
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	2,053,641 - 2,056,605 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	207,256 - 209,490 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	2,129,176 - 2,132,142 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	1,851,644 - 1,854,559 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	1,851,883 - 1,852,194 (-)	Ensembl	panpan1.1		panPan2

MRPL36
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	34	11,000,509 - 11,002,204 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	34	15,510,374 - 15,512,205 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	34	10,901,004 - 10,902,836 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	34	10,902,409 - 10,902,741 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UNSW_CanFamBas_1.0	34	10,931,481 - 10,933,209 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	34	11,141,916 - 11,143,748 (+)	NCBI		UU_Cfam_GSD_1.0

MRPL36
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	79,001,549 - 79,004,358 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	16	79,001,488 - 79,002,781 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	85,607,048 - 85,608,340 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MRPL36
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	1,640,921 - 1,642,451 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	4	1,641,151 - 1,641,459 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666064	27,121,877 - 27,123,684 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mrpl36
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624751	871,158 - 872,498 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624751	871,163 - 872,596 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005340727	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010002273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000031930 ⟹ ENSSTOP00000029405

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936815	159,295 - 159,916 (+)	Ensembl

RefSeq Acc Id:

XM_005340727 ⟹ XP_005340784

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	243,997,985 - 244,000,231 (+)	NCBI
SpeTri2.0	NW_004936815	159,324 - 161,512 (+)	NCBI

Sequence:

show sequence

CGGAAGAGGGGGTGGTGCGGACGGACGGTTCCTTCCCAGGCCGGGACGAGGCATGGCCGCGCTA
CTGGCGAGGCGCGTGCTGGCGACCGTCGCGGGCCCGCTCCGACTCCTGAGCCCCTGCGCCGCGG
CGTCGGCCTCGTGCGCGCCCCTGCTGTCCGGCCTCGCGGGCGCCGTGCGGGCGGGCGCCGTGCC
GCGCCTGGCGCTCCCGCAGCCCGCGGCGGGCTTCAAGACCAAGGCTGTGCTCAAGAAGCGCTGC
AAGGACTGCTACCTGGTGAAGCGGCGCGGGCGCTGGTTCGTCTACTGCAAGACCAACCCCAGGC
ACAAGCAGCGGCAGATGTAGCCCTCGGCCTCTGCGCGGGCGACCGAGCGACGTGACCTCGGGAA
GGTCCCTTATCAGAGGAAATAAATTTTAACCGCCCGTGTTCTGACCTCTCTTGACCTTCGGACC
GGCAGCCCTGGGAATCAGCCCACACCCCGTCAAGCCAGAGCCCCAGATGGGAAGCGAATTGCCT
TCCTCTGCCCTGGAGAGTTTGCGCACGGACTAGAGGGCGGAAGACCCCTGGAGTCCGAAGGCGC
TTCCTGGGGCGGAGCTCTGGCCTGTGTCTTACATGCCCCGGGGACAGCAGCCCCTTCCCAAGGA
CCCCACTGAAAGACATTGTGGGCAACTTGTAGCTAAAGGACACTTAATCCGTTTACTGCAAATG
CCTTTGGGGTAGCAGTTAAACCTGTCATTCTGGGTCTGAGGCAGAGCAGAAATGCCCCATGTCA
GCAAGTCGATGCTTTCAGAAAGTGGTAGTTGATGCTCTGCTAAAGGAGATGAGAAGCAAAACCG
TACCCTGGTGTCTTTGCAGAGGATCTGAAGGAAGCATTATGCTCTGGGATTTTGGAGAGCTGCC
ATTTGTCAGTGTTGAAAAGCTGAAGCAGGATTCTTGGGAAACGAGGTCCTTTTGTGGCCTGGCT
CCTCATGTGCTGTGAGTCTCAGAGATGAGTCTCATGAGTAGATTAAACCTTAGTCTGGCACAAT
TACTGGCTGCTTCTCAACTACAGGGAACGTGTGTGGGCCCATGAGTCCAATACAGGGAGCTGTG
GACCCGGTTCCCCAGGGTAGGGAATGTGGAGACTGTTGCTGGAGTACCAGCTGCCCCAGCGTCA
GAAATTCAGGAACCTTGACAGTGGGTGATGACAATAAATGACAGAGTTTCAAGTACCAGGTGTC
ATTTCCCAAGGTCACCCCTGTGATGGGCCTGTGCCCTGGGCCTCTGATGCTCAGGGAAGTGGGG
AGGGATGCTTCTGGTGGAGCCCAAGCACCAGGGGTAATTAGGCAGTGAGGAGAGGGATCTTGGC
AGTGATGAGCGTTTAAGGGGGAGAGAAAGGAGCATGCCCAGACCTAGGCGGTGGGTGTGACTGA
CACTAGTCCATGAACACATGTGAACCTGGAGATGGCTAGGAGACTCCAGAAAAGCAGAGTTTTG
GTTTTGAGGTGCTAGGCCGTAGGAGGGAAAATGGATAGTGTCATAAGCAGAGCCTGGCATCTTA
TGGGGAGAGGACCCGGTATAGACAAATGAATAGTTATTCCCTGGGGTACAGGTCACCTGTCATG
GGCAGCCCAGCCAGCACCTACTGGAGACAGTAGCAGCTCTGCCTGCCTGGGGAATGACCAGGAG
CCTGGTCCAGAGTGGACAGACTGGTGGTACCTCCCTGTCCGTGGGCTGCTGGAGCCCTTTCGTC
ATGGCCACTCCTGCACATCCACTCTGATGCCCAGCTCTCCCATTTGGAATGATGGTGCACAGAG
GTCTGAGCATAGGCCCAAATCCCAACTCTGCCACTTGCCCGTGGTGTGACCTTGGCTCTGTGCT
TCAGCTCCCTCGTGAAGTGGGTGAGAAAGGTGAACTGCCACCTTGGAGTTGGCGTGGTGGAATG
CAGGTGTGGAGTTTGTGTGTGTTTTTATTAGTAACAGAATAAGCGACAACTTTTATTCCCAAGG
TTTTCCAGTAAAATTGTTTTTCGATAAAAATAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005340784	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000029405.1
GenBank Protein	KAG3266921	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005340784 ⟸ XM_005340727
- UniProtKB:	A0A287D783 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAALLARRVLATVAGPLRLLSPCAAASASCAPLLSGLAGAVRAGAVPRLALPQPAAGFKTKAVL KKRCKDCYLVKRRGRWFVYCKTNPRHKQRQM hide sequence

RefSeq Acc Id:

ENSSTOP00000029405 ⟸ ENSSTOT00000031930

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000031957	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000031930.1	UniProtKB/TrEMBL
InterPro	Ribosomal_L36	UniProtKB/TrEMBL
	Ribosomal_L36_sp	UniProtKB/TrEMBL
NCBI Gene	Mrpl36	ENTREZGENE
PANTHER	39S RIBOSOMAL PROTEIN L36, MITOCHONDRIAL	UniProtKB/TrEMBL
	39S RIBOSOMAL PROTEIN L36, MITOCHONDRIAL	UniProtKB/TrEMBL
Pfam	Ribosomal_L36	UniProtKB/TrEMBL
PROSITE	PROKAR_LIPOPROTEIN	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57840	UniProtKB/TrEMBL
UniProt	A0A287D783	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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