Bola2b (bolA family member 2B) - Rat Genome Database

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Gene: Bola2b (bolA family member 2B) Ictidomys tridecemlineatus
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Symbol: Bola2b
Name: bolA family member 2B
RGD ID: 12620420
Description: ENCODES a protein that exhibits 2 iron, 2 sulfur cluster binding (inferred); iron-sulfur cluster binding (inferred); INVOLVED IN [2Fe-2S] cluster assembly (ortholog); cell redox homeostasis (ortholog); iron-sulfur cluster assembly (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 16p11.2 deletion syndrome, 593-kb (ortholog); FOUND IN cytoplasm (ortholog); iron-sulfur cluster assembly complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: bolA homolog 2B; bolA-like protein 2
RGD Orthologs
Human
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344124,237,375 - 124,254,370 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493650112,335,330 - 12,335,941 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Bola2b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344124,237,375 - 124,254,370 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493650112,335,330 - 12,335,941 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BOLA2B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381630,192,932 - 30,193,666 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1630,192,932 - 30,194,306 (-)EnsemblGRCh38hg38GRCh38
GRCh371630,204,253 - 30,204,987 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361630,111,757 - 30,113,128 (-)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map16p11.2NCBI
HuRef1627,866,894 - 27,868,265 (-)NCBIHuRef
CHM1_11631,521,251 - 31,522,622 (-)NCBICHM1_1
T2T-CHM13v2.01630,477,482 - 30,478,216 (-)NCBIT2T-CHM13v2.0
Bola2b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554936,812,208 - 6,812,932 (+)NCBIChiLan1.0ChiLan1.0
BOLA2B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21830,935,431 - 30,936,292 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11635,289,545 - 35,290,418 (+)NCBINHGRI_mPanPan1
PanPan1.11630,560,586 - 30,561,956 (-)NCBIpanpan1.1PanPan1.1panPan2
BOLA2B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1618,170,106 - 18,171,012 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha619,748,630 - 19,749,536 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0618,306,109 - 18,307,015 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl618,306,110 - 18,306,964 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1618,104,923 - 18,105,829 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0618,020,332 - 18,021,238 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0618,336,159 - 18,337,066 (-)NCBIUU_Cfam_GSD_1.0
BOLA2B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1318,345,691 - 18,351,508 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
BOLA2B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1526,478,391 - 26,479,775 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660683,067,650 - 3,069,097 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bola2b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478213,103,842 - 13,104,823 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_005323817   ⟹   XP_005323874
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344124,237,375 - 124,238,081 (+)NCBI
SpeTri2.0NW_00493650112,335,330 - 12,335,941 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040276932   ⟹   XP_040132866
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344124,237,439 - 124,254,370 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005323874 (Get FASTA)   NCBI Sequence Viewer  
  XP_040132866 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000007430.2
GenBank Protein KAG3259584 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005323874   ⟸   XM_005323817
- Peptide Label: isoform X2
- UniProtKB: I3MBD0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040132866   ⟸   XM_040276932
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000008301 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000008291.3 UniProtKB/TrEMBL
InterPro BOL2 UniProtKB/TrEMBL
  BolA UniProtKB/TrEMBL
  BolA-like_sf UniProtKB/TrEMBL
NCBI Gene Bola2b ENTREZGENE
PANTHER BOLA-LIKE PROTEIN 2 UniProtKB/TrEMBL
  PTHR12735 UniProtKB/TrEMBL
Pfam BolA UniProtKB/TrEMBL
PIRSF BolA UniProtKB/TrEMBL
Superfamily-SCOP SSF82657 UniProtKB/TrEMBL
UniProt I3MBD0 ENTREZGENE, UniProtKB/TrEMBL