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Gene: LOC101959177 (zinc finger protein 177) Ictidomys tridecemlineatus

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Symbol:

LOC101959177 (Ensembl: ZNF177)

Name:

zinc finger protein 177

RGD ID:

12613006

Description:

ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); RNA polymerase II transcription regulatory region sequence-specific DNA binding (inferred); sequence-specific double-stranded DNA binding (inferred); INVOLVED IN regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH autistic disorder (ortholog); Stomach Neoplasms (ortholog); FOUND IN nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

zinc finger protein 420; Znf177

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	210,310,010 - 210,317,969 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936659	40,812 - 45,961 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936659	37,464 - 43,743 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

Stomach Neoplasms (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of transcription by RNA polymerase II (IEA)

Cellular Component

nucleus (IEA)

Molecular Function

DNA-binding transcription factor activity, RNA polymerase II-specific (IEA)

protein binding (ISO)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (IEA)

sequence-specific double-stranded DNA binding (IEA)

zinc ion binding (IEA)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

LOC101959177
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	210,310,010 - 210,317,969 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936659	40,812 - 45,961 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936659	37,464 - 43,743 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZNF177
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	9,363,013 - 9,382,617 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	9,363,013 - 9,382,617 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	9,473,689 - 9,493,293 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	9,334,696 - 9,353,866 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	9,334,695 - 9,353,864	NCBI
Celera	19	9,330,466 - 9,388,754 (+)	NCBI		Celera
Cytogenetic Map	19	p13.2	NCBI
HuRef	19	9,055,330 - 9,074,945 (+)	NCBI		HuRef
CHM1_1	19	9,473,291 - 9,492,906 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	9,489,226 - 9,508,854 (+)	NCBI		T2T-CHM13v2.0

Zfp120
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	159,206,172 - 159,251,493 (+)	NCBI		GRCr8
mRatBN7.2	3	138,763,244 - 138,791,042 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	138,763,627 - 138,789,294 (+)	Ensembl		mRatBN7.2 Ensembl
mRatBN7.2 Ensembl	3	164,912,639 - 164,920,901 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	3	145,636,480 - 145,663,908 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	3	151,947,834 - 152,027,873 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	3	137,508,877 - 137,536,298 (+)	NCBI		Celera
Cytogenetic Map	3	q41	NCBI

ZNF177
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	14,257,122 - 14,296,050 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	13,242,293 - 13,280,820 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	8,876,053 - 8,914,593 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	9,575,905 - 9,602,801 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	9,598,439 - 9,602,801 (+)	Ensembl	panpan1.1		panPan2

LOC484969
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	51,316,126 - 51,345,697 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	51,179,881 - 51,212,136 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	51,837,210 - 51,869,633 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	51,836,421 - 51,877,001 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	51,044,768 - 51,077,148 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	51,470,238 - 51,502,462 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	51,711,422 - 51,743,657 (-)	NCBI		UU_Cfam_GSD_1.0

LOC110259338
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	67,880,793 - 67,907,869 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	67,878,961 - 67,907,864 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021733837	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021733838	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000035545 ⟹ ENSSTOP00000026022

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936659	40,812 - 45,961 (+)	Ensembl

RefSeq Acc Id:

XM_021733837 ⟹ XP_021589512

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	210,310,010 - 210,317,969 (-)	NCBI
SpeTri2.0	NW_004936659	37,464 - 43,743 (+)	NCBI

Sequence:

show sequence

CGTAGACCTAGTCTGACTTTTCATGTGGTACAAGAAGAGCTGAGGACAATGGAGAAAGTTCTCC
AAGCTCTGTTTGCTTAGGACCATGTCCAGCTAGGGCAGAAATATCCAAGAGAGAGAATGGCTGC
AGGATTGCTACCAGCTTGGTCACAGAATTCAGTGACCTTCCAGGAAGTGGCAGTGGACTTCTCT
CAGGAAGAGTGGGCATTGCTGGACCCTGCTCAAAAAATTTTATACAGAGATGTGATGCTGGAGA
ACTTTAGGAACCTGGCCTCAGTGGGGTATCAGCTCTGCAAACATAGTCTCATCTCCGAGGTAGA
ACAAGAAGAGCTGAGGACAGAGGAGAAAGGAATATTCCAAAGCACCTTTGAAGATAATGCCACG
TCTTATTTTCTCAAACTTCCAGAATCCTTGCCAAACTGGGAAACTCAACTAAAAGATTCAATTC
CTGTGCAGAATGTTCCTGGGAATACAACATCCAATGGCATAAAAATGGTACCAACCCAACCTGG
CAAGAAACCTATAGAAAGATTCTTCAGAAGGAACCCTTACCTTATTTGTATCAGTCATTGCAAG
GAAGAGAAATGCTATAAATATAAAGAATACGGCAAATGCTTCAAACATCCCTCAACTACTAAAA
GTCATGTGAGTATGCACACTGCAGAGAAAATTTTAGAATGTAAGGATTGTGGGAAAGTTTTCAA
TCAGGAGTCATGCCTTAGAAAACACTTAAGAACTCTCACAGGAGAGAAGGCTTACAAGTGTAAT
CAGTGTGGTGTATCCTTCAGCCTTCACTTTTCCTTCTCAGGATGTGAGCAAATACATACTGGAG
AGAAATTCTATGAACGCACTGACTGTAGAACAAAGTCTTCCCTTAGTGTTCATAAAAAAATACA
AACTGTGGAGGAGAGCTTGGAATGTAACAAATATGGGAGAGCTTTCACTGACCCTTTGTCCCTT
CAGAAATGTGTCAGAACTCACACTAAAGAGAAACTCTATGAGTGCAGTGACTGTGGAAAAGCCT
TCATTTTTCAGTCCTCCCTGAAGAAACATATGAGATCCCACACTGGAGAGAAACCTTACGAGTG
TAATCATTGTGGGAAATCTTTCAGCCAGAGCTCTCATCTCAATGTGCACAAAAGAACTCACACT
GGAGAGAAACCCTATGATTGTAAGGAGTGTGGGAAGGCCTTCACTGTTCCTTCATCCCTTCAGA
AACATGTGAGAACCCACACTGGAGAGAAACCTTATGAATGCACTGACTGTGGAAAAGCTTTCAT
TGATCAGTCATCCCTTAAGAAACACACACGGTCTCACACTGGAGAAAAACCATATGAGTGTAAT
CAGTGTGGAAAATCCTTCAGCACAGGCTCTTATCTTATTGTGCACAGAAGAACTCACACTGGAG
AGAAAACCTATGAGTGTAAAGAATGCGGGAAGGCCTTTAGGAATTCCTCTTGCCTGAGGGTACA
TGTGAGAACACACACTGGAGAGAAGCCCTATAAATGCATGCAGTGTGGGAAAGCCTTCAGCACA
AGCACTAACCTTATAATGCACAAGCGAATACATACAGGACAGAAAGTCTGTGAATGAAATGACT
TTTGAGGAGGTTATGTTGTCCTGCATGTCTCATTCCTCATTCTAGAACTCACACTGGAGAGAAA
TTGTATTGTAAACCATGTGGAAAAAGTATTGAGGCACAATTCTTAGTTCTTATCAGTAATGACT
GTTTCATCCTTAAAGTGCCATAACTCATTAATTTATAATAAGCATTGAAGACAATATATCAGTA
AACTGCTTGACTCAAAAAACACCACAAGTTTTGATAATGTAATATTATAAGTTAGTATTAAATA
ATGTCTGATTCCTACCAAGATATTTTAGACCCACAGATAAGTTAGAAGTGAGTTTATTAATAGG
CAGATCTTATGTATATTTTAGTTAACTTTATTTTAACTCATTTTGGACAGAATGCATAGTCTTA
ATGATATAGGTAAATGTAAAAAGTTGGTAGAAACTTGCTGTGTGGTGTACGTAGCTGATAGAAC
TAGTTACTGTCCCAGT

hide sequence

RefSeq Acc Id:

XM_021733838 ⟹ XP_021589513

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	210,310,010 - 210,317,969 (-)	NCBI
SpeTri2.0	NW_004936659	37,464 - 43,743 (+)	NCBI

Sequence:

show sequence

CGTAGACCTAGTCTGACTTTTCATGTGGTACAAGAAGAGCTGAGGACAATGGAGAAAGTTCTCC
AAGCTCTGTTTGCTTAGGACCATGTCCAGCTAGGGCAGAAATATCCAAGAGAGAGAATGGCTGC
AGGATTGCTACCAGCTTGGTCACAGAATTCAGTGACCTTCCAGGAAGTGGCAGTGGACTTCTCT
CAGGAAGAGTGGGCATTGCTGGACCCTGCTCAAAAAATTTTATACAGAGATGTGATGCTGGAGA
ACTTTAGGAACCTGGCCTCAGTGGGGTATCAGCTCTGCAAACATAGTCTCATCTCCGAGGTAGA
ACAAGAAGAGCTGAGGACAGAGGAGAAAGGAATATTCCAAAGCACCTTTGAAGACTGGGAAACT
CAACTAAAAGATTCAATTCCTGTGCAGAATGTTCCTGGGAATACAACATCCAATGGCATAAAAA
TGGTACCAACCCAACCTGGCAAGAAACCTATAGAAAGATTCTTCAGAAGGAACCCTTACCTTAT
TTGTATCAGTCATTGCAAGGAAGAGAAATGCTATAAATATAAAGAATACGGCAAATGCTTCAAA
CATCCCTCAACTACTAAAAGTCATGTGAGTATGCACACTGCAGAGAAAATTTTAGAATGTAAGG
ATTGTGGGAAAGTTTTCAATCAGGAGTCATGCCTTAGAAAACACTTAAGAACTCTCACAGGAGA
GAAGGCTTACAAGTGTAATCAGTGTGGTGTATCCTTCAGCCTTCACTTTTCCTTCTCAGGATGT
GAGCAAATACATACTGGAGAGAAATTCTATGAACGCACTGACTGTAGAACAAAGTCTTCCCTTA
GTGTTCATAAAAAAATACAAACTGTGGAGGAGAGCTTGGAATGTAACAAATATGGGAGAGCTTT
CACTGACCCTTTGTCCCTTCAGAAATGTGTCAGAACTCACACTAAAGAGAAACTCTATGAGTGC
AGTGACTGTGGAAAAGCCTTCATTTTTCAGTCCTCCCTGAAGAAACATATGAGATCCCACACTG
GAGAGAAACCTTACGAGTGTAATCATTGTGGGAAATCTTTCAGCCAGAGCTCTCATCTCAATGT
GCACAAAAGAACTCACACTGGAGAGAAACCCTATGATTGTAAGGAGTGTGGGAAGGCCTTCACT
GTTCCTTCATCCCTTCAGAAACATGTGAGAACCCACACTGGAGAGAAACCTTATGAATGCACTG
ACTGTGGAAAAGCTTTCATTGATCAGTCATCCCTTAAGAAACACACACGGTCTCACACTGGAGA
AAAACCATATGAGTGTAATCAGTGTGGAAAATCCTTCAGCACAGGCTCTTATCTTATTGTGCAC
AGAAGAACTCACACTGGAGAGAAAACCTATGAGTGTAAAGAATGCGGGAAGGCCTTTAGGAATT
CCTCTTGCCTGAGGGTACATGTGAGAACACACACTGGAGAGAAGCCCTATAAATGCATGCAGTG
TGGGAAAGCCTTCAGCACAAGCACTAACCTTATAATGCACAAGCGAATACATACAGGACAGAAA
GTCTGTGAATGAAATGACTTTTGAGGAGGTTATGTTGTCCTGCATGTCTCATTCCTCATTCTAG
AACTCACACTGGAGAGAAATTGTATTGTAAACCATGTGGAAAAAGTATTGAGGCACAATTCTTA
GTTCTTATCAGTAATGACTGTTTCATCCTTAAAGTGCCATAACTCATTAATTTATAATAAGCAT
TGAAGACAATATATCAGTAAACTGCTTGACTCAAAAAACACCACAAGTTTTGATAATGTAATAT
TATAAGTTAGTATTAAATAATGTCTGATTCCTACCAAGATATTTTAGACCCACAGATAAGTTAG
AAGTGAGTTTATTAATAGGCAGATCTTATGTATATTTTAGTTAACTTTATTTTAACTCATTTTG
GACAGAATGCATAGTCTTAATGATATAGGTAAATGTAAAAAGTTGGTAGAAACTTGCTGTGTGG
TGTACGTAGCTGATAGAACTAGTTACTGTCCCAGT

hide sequence

Protein Sequences


Protein RefSeqs	XP_021589512	(Get FASTA)	NCBI Sequence Viewer
	XP_021589513	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000026022.1

RefSeq Acc Id:

XP_021589512 ⟸ XM_021733837

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAAGLLPAWSQNSVTFQEVAVDFSQEEWALLDPAQKILYRDVMLENFRNLASVGYQLCKHSLIS
EVEQEELRTEEKGIFQSTFEDNATSYFLKLPESLPNWETQLKDSIPVQNVPGNTTSNGIKMVPT
QPGKKPIERFFRRNPYLICISHCKEEKCYKYKEYGKCFKHPSTTKSHVSMHTAEKILECKDCGK
VFNQESCLRKHLRTLTGEKAYKCNQCGVSFSLHFSFSGCEQIHTGEKFYERTDCRTKSSLSVHK
KIQTVEESLECNKYGRAFTDPLSLQKCVRTHTKEKLYECSDCGKAFIFQSSLKKHMRSHTGEKP
YECNHCGKSFSQSSHLNVHKRTHTGEKPYDCKECGKAFTVPSSLQKHVRTHTGEKPYECTDCGK
AFIDQSSLKKHTRSHTGEKPYECNQCGKSFSTGSYLIVHRRTHTGEKTYECKECGKAFRNSSCL
RVHVRTHTGEKPYKCMQCGKAFSTSTNLIMHKRIHTGQKVCE

hide sequence

RefSeq Acc Id:

XP_021589513 ⟸ XM_021733838

- Peptide Label:

isoform X2

- Sequence:

show sequence

MAAGLLPAWSQNSVTFQEVAVDFSQEEWALLDPAQKILYRDVMLENFRNLASVGYQLCKHSLIS
EVEQEELRTEEKGIFQSTFEDWETQLKDSIPVQNVPGNTTSNGIKMVPTQPGKKPIERFFRRNP
YLICISHCKEEKCYKYKEYGKCFKHPSTTKSHVSMHTAEKILECKDCGKVFNQESCLRKHLRTL
TGEKAYKCNQCGVSFSLHFSFSGCEQIHTGEKFYERTDCRTKSSLSVHKKIQTVEESLECNKYG
RAFTDPLSLQKCVRTHTKEKLYECSDCGKAFIFQSSLKKHMRSHTGEKPYECNHCGKSFSQSSH
LNVHKRTHTGEKPYDCKECGKAFTVPSSLQKHVRTHTGEKPYECTDCGKAFIDQSSLKKHTRSH
TGEKPYECNQCGKSFSTGSYLIVHRRTHTGEKTYECKECGKAFRNSSCLRVHVRTHTGEKPYKC
MQCGKAFSTSTNLIMHKRIHTGQKVCE

hide sequence

Ensembl Acc Id:

ENSSTOP00000026022 ⟸ ENSSTOT00000035545

Protein Domains

C2H2-type

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000031518	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000035545.1	UniProtKB/TrEMBL
Gene3D-CATH	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	Znf_C2H2_sf	UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/TrEMBL
NCBI Gene	LOC101959177	ENTREZGENE
PANTHER	ZINC FINGER PROTEIN	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN 177	UniProtKB/TrEMBL
Pfam	zf-C2H2	UniProtKB/TrEMBL
	zf-H2C2_2	UniProtKB/TrEMBL
PROSITE	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
SMART	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57667	UniProtKB/TrEMBL
UniProt	A0A287CXJ3_ICTTR	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-26	LOC101959177	zinc finger protein 177	Znf177	zinc finger protein 177	Symbol and/or name change	5135510	APPROVED
2017-07-13	Znf177	zinc finger protein 177	LOC101959177	zinc finger protein 420	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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