Qrfp (pyroglutamylated RFamide peptide) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Qrfp (pyroglutamylated RFamide peptide) Ictidomys tridecemlineatus
Analyze
Symbol: Qrfp
Name: pyroglutamylated RFamide peptide
RGD ID: 12601889
Description: ENCODES a protein that exhibits G protein-coupled receptor binding (ortholog); INVOLVED IN grooming behavior (inferred); locomotory behavior (inferred); neuropeptide signaling pathway (inferred); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2K (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN extracellular region (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC101965413; orexigenic neuropeptide QRFP
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947198,055,921 - 198,058,340 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648717,824,630 - 17,824,977 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648717,824,474 - 17,826,867 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Qrfp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947198,055,921 - 198,058,340 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648717,824,630 - 17,824,977 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648717,824,474 - 17,826,867 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
QRFP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389130,892,707 - 130,896,812 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9130,892,707 - 130,896,812 (-)EnsemblGRCh38hg38GRCh38
GRCh379133,768,094 - 133,772,199 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369132,758,636 - 132,759,046 (-)NCBINCBI36Build 36hg18NCBI36
Celera9104,307,102 - 104,307,512 (-)NCBICelera
Cytogenetic Map9q34.12NCBI
HuRef9103,255,480 - 103,255,890 (-)NCBIHuRef
CHM1_19133,917,427 - 133,917,837 (-)NCBICHM1_1
T2T-CHM13v2.09143,097,580 - 143,101,684 (-)NCBIT2T-CHM13v2.0
Qrfp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39231,696,180 - 31,700,592 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl231,696,178 - 31,700,592 (-)EnsemblGRCm39 Ensembl
GRCm38231,806,168 - 31,810,580 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl231,806,166 - 31,810,580 (-)EnsemblGRCm38mm10GRCm38
MGSCv37231,661,688 - 31,666,038 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36231,628,177 - 31,632,527 (-)NCBIMGSCv36mm8
Celera231,508,856 - 31,513,205 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map221.89NCBI
Qrfp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8335,485,579 - 35,487,902 (-)NCBIGRCr8
mRatBN7.2315,088,045 - 15,088,419 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl315,088,045 - 15,088,425 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx318,161,522 - 18,161,896 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0326,746,525 - 26,746,899 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0324,993,882 - 24,994,256 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.039,402,397 - 9,404,354 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl310,036,461 - 10,036,841 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl39,403,840 - 9,404,214 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0315,395,829 - 15,396,203 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4310,912,141 - 10,912,515 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1310,808,304 - 10,808,679 (-)NCBI
Celera39,835,764 - 9,836,138 (-)NCBICelera
Cytogenetic Map3p12NCBI
Qrfp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955513803,630 - 804,034 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955513802,809 - 805,835 (-)NCBIChiLan1.0ChiLan1.0
QRFP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2118,460,368 - 8,467,097 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan198,461,084 - 8,465,203 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09102,008,900 - 102,013,194 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19130,658,415 - 130,662,533 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9130,659,140 - 130,659,550 (-)Ensemblpanpan1.1panPan2
QRFP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1953,110,763 - 53,113,743 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl953,112,586 - 53,112,996 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha952,310,894 - 52,313,876 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0954,011,306 - 54,014,289 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl954,013,135 - 54,013,545 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1952,788,911 - 52,791,894 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0953,109,442 - 53,112,428 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0953,202,385 - 53,205,368 (+)NCBIUU_Cfam_GSD_1.0
QRFP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1270,911,878 - 270,912,282 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11270,909,323 - 270,917,674 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21304,834,154 - 304,837,026 (-)NCBISscrofa10.2Sscrofa10.2susScr3
QRFP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1127,247,841 - 7,256,677 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660798,214,329 - 8,217,588 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Qrfp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247604,873,578 - 4,874,921 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005321181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000035624   ⟹   ENSSTOP00000024292
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493648717,824,630 - 17,824,977 (-)Ensembl
RefSeq Acc Id: XM_005321181   ⟹   XP_005321238
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947198,055,921 - 198,058,340 (-)NCBI
SpeTri2.0NW_00493648717,824,474 - 17,826,867 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005321238 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000024292.1
GenBank Protein KAG3288196 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005321238   ⟸   XM_005321181
- Sequence:
Ensembl Acc Id: ENSSTOP00000024292   ⟸   ENSSTOT00000035624


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000030261 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000035624.1 UniProtKB/TrEMBL
InterPro P518 UniProtKB/TrEMBL
NCBI Gene Qrfp ENTREZGENE
PANTHER OREXIGENIC NEUROPEPTIDE QRFP UniProtKB/TrEMBL
  PTHR36476 UniProtKB/TrEMBL
Pfam RFamide_26RFa UniProtKB/TrEMBL
UniProt A0A287CSP1_ICTTR UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-09 Qrfp  pyroglutamylated RFamide peptide  LOC101965413  pyroglutamylated RFamide peptide  Symbol and/or name change 5135510 APPROVED
2021-03-26 LOC101965413  pyroglutamylated RFamide peptide  Qrfp  pyroglutamylated RFamide peptide  Symbol and/or name change 5135510 APPROVED