Znf556 (zinc finger protein 556) - Rat Genome Database

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Gene: Znf556 (zinc finger protein 556) Ictidomys tridecemlineatus
Analyze
Symbol: Znf556
Name: zinc finger protein 556
RGD ID: 12597040
Description: ASSOCIATED WITH genetic disease (ortholog); Neurodevelopmental Disorders (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Bonobo
Dog
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118216,171,676 - 216,179,437 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365881,655,365 - 1,662,873 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Znf556
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118216,171,676 - 216,179,437 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365881,655,365 - 1,662,873 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF556
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38192,867,335 - 2,883,445 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl192,867,335 - 2,883,445 (+)EnsemblGRCh38hg38GRCh38
GRCh37192,867,333 - 2,883,443 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36192,818,333 - 2,829,501 (+)NCBINCBI36Build 36hg18NCBI36
Build 34192,818,332 - 2,829,501NCBI
Celera192,802,646 - 2,813,816 (+)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef192,638,308 - 2,649,478 (+)NCBIHuRef
CHM1_1192,866,920 - 2,878,107 (+)NCBICHM1_1
T2T-CHM13v2.0192,842,602 - 2,858,723 (+)NCBIT2T-CHM13v2.0
ZNF556
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2207,252,926 - 7,273,635 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1196,485,667 - 6,506,365 (+)NCBINHGRI_mPanPan1
ZNF556
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12056,333,136 - 56,357,075 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2056,336,162 - 56,347,541 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2056,131,529 - 56,144,696 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02057,067,624 - 57,080,842 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2057,069,480 - 57,071,802 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12056,121,732 - 56,134,866 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02056,605,856 - 56,619,020 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02056,806,452 - 56,819,599 (-)NCBIUU_Cfam_GSD_1.0
ZNF556
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.162,649,000 - 2,662,610 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660815,932,981 - 5,947,590 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021730860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_021730860   ⟹   XP_021586535
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118216,171,676 - 216,179,437 (-)NCBI
SpeTri2.0NW_0049365881,655,365 - 1,662,873 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021586535 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3280760 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021586535   ⟸   XM_021730860
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Znf556 ENTREZGENE