Tstd1 (thiosulfate sulfurtransferase like domain containing 1) - Rat Genome Database

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Gene: Tstd1 (thiosulfate sulfurtransferase like domain containing 1) Ictidomys tridecemlineatus
Analyze
Symbol: Tstd1
Name: thiosulfate sulfurtransferase like domain containing 1
RGD ID: 12595725
Description: ENCODES a protein that exhibits thiosulfate-thiol sulfurtransferase activity (inferred); INVOLVED IN sulfide oxidation, using sulfide:quinone oxidoreductase (inferred); ASSOCIATED WITH autoimmune interstitial lung, joint, and kidney disease (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred); cytoplasmic ribonucleoprotein granule (inferred); cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: thiosulfate sulfurtransferase like domain containing 1, transcript variant X1; thiosulfate sulfurtransferase like domain containing 1, transcript variant X2; thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 1; thiosulfate:glutathione sulfurtransferase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050587,142,237 - 7,143,652 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936903350,927 - 352,461 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936903350,895 - 352,302 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Tstd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050587,142,237 - 7,143,652 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936903350,927 - 352,461 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936903350,895 - 352,302 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TSTD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381161,037,631 - 161,038,964 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1161,037,631 - 161,038,977 (-)EnsemblGRCh38hg38GRCh38
GRCh371161,007,421 - 161,008,754 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361159,274,042 - 159,275,372 (-)NCBINCBI36Build 36hg18NCBI36
Celera1134,074,692 - 134,076,045 (-)NCBICelera
Cytogenetic Map1q23.3NCBI
HuRef1132,365,360 - 132,366,713 (-)NCBIHuRef
CHM1_11162,403,594 - 162,404,947 (-)NCBICHM1_1
T2T-CHM13v2.01160,175,138 - 160,176,471 (-)NCBIT2T-CHM13v2.0
Tstd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391171,246,601 - 171,247,920 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1171,246,440 - 171,247,920 (+)EnsemblGRCm39 Ensembl
GRCm381171,419,033 - 171,420,352 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1171,418,872 - 171,420,352 (+)EnsemblGRCm38mm10GRCm38
MGSCv371173,349,164 - 173,350,483 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361173,254,765 - 173,257,029 (+)NCBIMGSCv36mm8
Celera1173,870,402 - 173,871,721 (+)NCBICelera
Cytogenetic Map1H3NCBI
cM Map179.41NCBI
Tstd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81386,385,679 - 86,387,315 (+)NCBIGRCr8
mRatBN7.21383,853,421 - 83,854,875 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1383,822,035 - 83,854,885 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01389,805,652 - 89,807,355 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1389,805,962 - 89,807,243 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01394,433,197 - 94,434,890 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41387,344,867 - 87,346,258 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1383,483,762 - 83,485,465 (+)NCBICelera
Cytogenetic Map13q24NCBI
Tstd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546812,813,116 - 12,814,226 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546812,813,116 - 12,814,651 (-)NCBIChiLan1.0ChiLan1.0
TSTD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2188,821,316 - 88,822,807 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1188,503,088 - 88,504,594 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01136,441,679 - 136,443,213 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11140,363,881 - 140,365,259 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1140,363,881 - 140,365,295 (-)Ensemblpanpan1.1panPan2
TSTD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13821,419,306 - 21,421,428 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3821,419,346 - 21,421,427 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3821,493,224 - 21,495,205 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03821,536,929 - 21,538,747 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3821,536,962 - 21,538,746 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13821,425,030 - 21,427,049 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03821,838,922 - 21,840,925 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03822,248,248 - 22,250,289 (+)NCBIUU_Cfam_GSD_1.0
TSTD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl489,401,159 - 89,403,277 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1489,401,320 - 89,402,741 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2497,371,109 - 97,372,520 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TSTD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1202,950,536 - 2,952,100 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660381,988,375 - 1,989,758 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tstd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624794325,255 - 326,736 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000029407   ⟹   ENSSTOP00000021572
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936903350,927 - 352,461 (-)Ensembl
RefSeq Acc Id: XM_005341818   ⟹   XP_005341875
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244050587,142,237 - 7,143,652 (-)NCBI
SpeTri2.0NW_004936903350,895 - 352,302 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005341819   ⟹   XP_005341876
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244050587,142,237 - 7,143,646 (-)NCBI
SpeTri2.0NW_004936903350,895 - 352,302 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005341875 (Get FASTA)   NCBI Sequence Viewer  
  XP_005341876 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000021572.2
GenBank Protein KAG3281072 (Get FASTA)   NCBI Sequence Viewer  
  KAG3281073 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005341876   ⟸   XM_005341819
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005341875   ⟸   XM_005341818
- Peptide Label: isoform X1
- UniProtKB: I3NB25 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000021572   ⟸   ENSSTOT00000029407
Protein Domains
Rhodanese


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000021512 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000029407.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.250.10 UniProtKB/TrEMBL
InterPro Rhodanese-like_dom UniProtKB/TrEMBL
  Rhodanese-like_dom_sf UniProtKB/TrEMBL
  TSTD1_mammal UniProtKB/TrEMBL
NCBI Gene Tstd1 ENTREZGENE
PANTHER PTHR45544 UniProtKB/TrEMBL
  THIOSULFATE:GLUTATHIONE SULFURTRANSFERASE UniProtKB/TrEMBL
Pfam Rhodanese UniProtKB/TrEMBL
PROSITE RHODANESE_3 UniProtKB/TrEMBL
SMART RHOD UniProtKB/TrEMBL
Superfamily-SCOP SSF52821 UniProtKB/TrEMBL
UniProt I3NB25 ENTREZGENE, UniProtKB/TrEMBL