Satb1 (SATB homeobox 1) - Rat Genome Database

Name: Satb1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Satb1 (SATB homeobox 1) Ictidomys tridecemlineatus

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Symbol:

Satb1

Name:

SATB homeobox 1

RGD ID:

12595558

Description:

ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription factor binding (ortholog); INVOLVED IN activated T cell proliferation (ortholog); CD4-positive, alpha-beta T cell differentiation (ortholog); CD8-positive, alpha-beta T cell differentiation (ortholog); ASSOCIATED WITH 3p deletion syndrome (ortholog); Animal Disease Models (ortholog); autism spectrum disorder (ortholog); FOUND IN chromatin (ortholog); heterochromatin (ortholog); nuclear matrix (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

DNA-binding protein SATB1; SATB homeobox 1, transcript variant X1; SATB homeobox 1, transcript variant X2; SATB homeobox 1, transcript variant X3; SATB homeobox 1, transcript variant X4; SATB homeobox 1, transcript variant X5; SATB homeobox 1, transcript variant X6; SATB homeobox 1, transcript variant X7

RGD Orthologs

Alliance Orthologs

More Info

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More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SATB1 (SATB homeobox 1)	NCBI	Ortholog
Mus musculus (house mouse):	Satb1 (special AT-rich sequence binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Satb1 (SATB homeobox 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Satb1 (SATB homeobox 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SATB1 (SATB homeobox 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SATB1 (SATB homeobox 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SATB1 (SATB homeobox 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SATB1 (SATB homeobox 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Satb1 (SATB homeobox 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	177,766,685 - 177,862,478 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936473	10,904,989 - 11,001,051 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936473	10,906,059 - 11,001,007 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

3p deletion syndrome (ISO)

Animal Disease Models (ISO)

autism spectrum disorder (ISO)

DEVELOPMENTAL DELAY WITH DYSMORPHIC FACIES AND DENTAL ANOMALIES (ISO)

Familial Hyperaldosteronism, Type II (ISO)

genetic disease (ISO)

KOHLSCHUTTER-TONZ SYNDROME-LIKE (ISO)

lung adenocarcinoma (ISO)

Neurodevelopmental Disorders (ISO)

Sjogren's syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

activated T cell proliferation (ISO)

CD4-positive, alpha-beta T cell differentiation (ISO)

CD8-positive, alpha-beta T cell differentiation (ISO)

chromatin organization (ISO)

chromatin remodeling (IEA,ISO)

epidermis development (ISO)

negative regulation of transcription by RNA polymerase II (IEA,ISO)

reflex (ISO)

regulation of DNA-templated transcription (ISO)

regulation of transcription by RNA polymerase II (IEA)

T cell activation (ISO)

Cellular Component

chromatin (ISO)

heterochromatin (ISO)

nuclear body (IEA)

nuclear matrix (ISO)

nucleoplasm (IEA)

nucleus (IEA)

PML body (IEA)

Molecular Function

chromatin binding (ISO)

DNA binding (IEA)

DNA-binding transcription factor activity (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IEA)

DNA-binding transcription factor binding (ISO)

DNA-binding transcription repressor activity, RNA polymerase II-specific (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IEA)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (IEA)

sequence-specific DNA binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Satb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	177,766,685 - 177,862,478 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936473	10,904,989 - 11,001,051 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936473	10,906,059 - 11,001,007 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SATB1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	18,345,377 - 18,445,592 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	18,345,377 - 18,445,621 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	18,386,869 - 18,487,084 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	18,364,438 - 18,440,344 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	18,364,438 - 18,440,344	NCBI
Celera	3	18,327,413 - 18,424,451 (-)	NCBI		Celera
Cytogenetic Map	3	p24.3	NCBI
HuRef	3	18,323,695 - 18,414,820 (-)	NCBI		HuRef
CHM1_1	3	18,342,029 - 18,433,152 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	18,347,503 - 18,447,703 (-)	NCBI		T2T-CHM13v2.0

Satb1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	52,043,215 - 52,140,318 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	52,043,215 - 52,140,318 (-)	Ensembl		GRCm39 Ensembl
GRCm38	17	51,736,187 - 51,833,290 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	51,736,187 - 51,833,290 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	51,875,512 - 51,972,615 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	51,204,398 - 51,297,562 (-)	NCBI		MGSCv36	mm8
Celera	17	55,200,882 - 55,296,979 (-)	NCBI		Celera
Cytogenetic Map	17	C	NCBI
cM Map	17	26.81	NCBI

Satb1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	4,916,958 - 5,010,359 (-)	NCBI		GRCr8
mRatBN7.2	9	4,677,817 - 4,773,061 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	4,680,920 - 4,753,251 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	5,873,936 - 5,946,105 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	11,045,778 - 11,117,946 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	10,178,871 - 10,251,041 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	2,181,135 - 2,277,949 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	2,190,915 - 2,274,629 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	2,129,797 - 2,224,329 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	3,307,651 - 3,391,348 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	3,307,650 - 3,391,345 (+)	NCBI
Celera	9	1,577,500 - 1,650,421 (-)	NCBI		Celera
Cytogenetic Map	9	q11	NCBI

Satb1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955430	10,587,539 - 10,683,887 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955430	10,587,539 - 10,683,887 (-)	NCBI	ChiLan1.0	ChiLan1.0

SATB1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	18,329,857 - 18,428,420 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	18,334,623 - 18,433,171 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	18,267,819 - 18,368,924 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	18,602,204 - 18,700,696 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	18,602,204 - 18,681,211 (-)	Ensembl	panpan1.1		panPan2

SATB1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	24,614,198 - 24,692,254 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	24,593,489 - 24,690,977 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	24,628,318 - 24,729,971 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	25,080,231 - 25,182,042 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	25,080,226 - 25,179,312 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	23	24,802,248 - 24,903,924 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	24,862,371 - 24,964,041 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	25,107,820 - 25,209,575 (+)	NCBI		UU_Cfam_GSD_1.0

SATB1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	5,314,148 - 5,417,610 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	5,315,985 - 5,410,686 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	6,018,336 - 6,115,617 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SATB1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	63,163,989 - 63,263,122 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	63,170,243 - 63,263,149 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	36,170,384 - 36,269,846 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Satb1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624821	3,726,355 - 3,800,497 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624821	3,723,609 - 3,820,921 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005317253	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013361978	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021731511	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021731515	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021731516	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021731520	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021731523	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040289843	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040289844	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000010860 ⟹ ENSSTOP00000009742

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936473	10,904,989 - 11,001,051 (-)	Ensembl

Ensembl Acc Id:

ENSSTOT00000034715 ⟹ ENSSTOP00000026795

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936473	10,904,989 - 10,980,447 (-)	Ensembl

Ensembl Acc Id:

ENSSTOT00000036320 ⟹ ENSSTOP00000030433

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936473	10,904,989 - 11,001,051 (-)	Ensembl

RefSeq Acc Id:

XM_005317253 ⟹ XP_005317310

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	177,766,685 - 177,842,342 (-)	NCBI
SpeTri2.0	NW_004936473	10,906,059 - 10,980,447 (-)	NCBI

Sequence:

show sequence

CTCATCCTCTCTCTCTCCCCCTCACTCACTGGTCTCCCCAGACGCTCCCAGCCCCGCGTCAATG
GGCAGGGAGAGGGTCCTCGGGGCTGTTGTCAGCGAGGGCGGAATCAAAAGTGGCATTTTAGTGC
CTTTCCGGGGCTTTTCTCGCGACCCGCTGCCCCTCACCCTCTCTGTCCCCTGGTAGATGCCCTC
GTTGGGGGTGCGAGGCTGTAGGGAAAAAGTTTAAGGTTTGTTAATATTAGTCGCTATCGCCGGG
GAGGGGGTGGGGGCGATTGGCAGGGAGGCGAGGTGGCCTTCCCCTCTGCGCGTTCTCCGGGGTT
ATTGGAGAATAATATTGCAAGTGACAGCCAGAAGTAAGACTTTCTGTCCTCACACCGAAGAACC
CGAGCGAGCGGGAGGGAAGAGAGAAGAGGGGACTTTTTTTTTTTTTTTTCTTAAATCCCCTTCC
TTTTTGGAGACCTTGTCCGCAGTGATTTTTTTTTCTTCTTTTTCTTTTTAAGAGATTCCTCAGT
CACCACCTCGTCTCCCCAGCACCACCATAGTGTACAGCTCATAACGGGTTTTGCTTTGTTTTTA
CGATTCCCCCCCCCCCCAACGAATCACTTGTCAGATCAATTTTATCTTCTCCCTCCTGCCTACT
TCCCACTCTCCCCTCCTCCCCATCGAAAAACCCCGTTCTCTGAGGTTAGACATTTTACAAATCA
TATACGTTGATTTTCGAATTGTGATTTTTTTTTTTTAAACCCCTCTCCCATGGCTACTCTTCTA
GACGTTTGTTTCTGCCCTTCCCCCGCTGACGGGGGGCGGGGGTAGGGGAAGAGAAAATAATACA
ATTTCAGGGGAAGTCGCCTTCAGGTCTGCTGCTTTTTTTTTTTTTTAATTAAAAAAAAAAAAGG
ACATAGAAAACATCAGTCTTGAACTTCACTTCAAGAACCCGGGCTGCAAAGGAAATCTCCTTTG
TTTTTGTTATTTATATGCTGTCAAGTTTTGAAGTGGTGATCTTTAGACAGTGACTGAGTATGGA
TCATTTGAACGAGGCAACTCAGGGGAAAGAACATTCAGAAATGTCTAACAATGTAAGCGATCCG
AAGGGTCCACCAGCCAAGATTGCCCGCCTGGAGCAGAACGGGAGCCCACTAGGAAGAGGAAGGC
TTGGGAGCACAGGTGCAAAAATGCAGGGAGTGCCTTTAAAACACTCGGGCCATCTGATGAAAAC
CAACCTTAGGAAAGGAACCATGCTACCAGTTTTCTGCGTGGTAGAACATTATGAAAACGCCATT
GAATATGATTGCAAGGAGGAGCATGCGGAATTTGTGTTGGTGAGAAAGGATATGCTTTTCAACC
AGCTGATAGAAATGGCATTGCTGTCTCTAGGTTATTCACATAGCTCTGCTGCCCAGGCTAAAGG
GCTAATCCAGGTTGGAAAGTGGAATCCAGTTCCACTGTCTTATGTGACAGATGCCCCTGATGCT
ACGGTAGCAGATATGCTTCAAGATGTGTATCATGTGGTCACATTGAAAATTCAGTTACACAGTT
GCCCCAAACTAGAAGACTTGCCTCCCGAACAATGGTCGCACACCACAGTAAGGAATGCTCTGAA
GGACTTACTGAAAGATATGAATCAGAGTTCGTTGGCCAAGGAGTGCCCCCTTTCACAGAGTATG
ATTTCTTCCATTGTGAACAGCACTTACTATGCAAATGTCTCAGCAGCAAAATGTCAAGAATTTG
GAAGGTGGTACAAACATTTCAAGAAGACAAAAGATATGATGGTCGAAATGGATAGTCTTTCTGA
GCTATCCCAGCAAGGTGCCAACCATGTCAACTTTGGCCAGCAGCCGGTCCCAGGGAACACAGCT
GAGCAGCCTCCGTCCCCCGCACAGCTCTCCCATGGCAGCCAGCCCTCTGTCCGGACCCCTCTTC
CAAACCTGCACCCTGGGCTGGTATCAACGCCTATCAGTCCTCAGCTGGTCAACCAGCAGCTGGT
GATGGCCCAGCTACTGAATCAGCAGTATGCAGTGAATAGACTATTAGCCCAGCAGTCCTTAAAC
CAACAGTACTTGAACCACCCTCCCCCTGTCAGTAGATCTATGAATAAGCCTTTGGAGCAACAGG
TTTCAACCAACACAGAGGTGTCTTCCGAAATCTACCAGTGGGTTCGTGATGAACTGAAACGAGC
AGGAATCTCCCAGGCAGTGTTTGCACGTGTGGCTTTTAACAGAACTCAGGGCTTGCTTTCAGAA
ATCCTCCGGAAGGAAGAGGACCCCAAGACTGCATCCCAGTCTTTGCTGGTAAACCTTCGGGCTA
TGCAGAATTTCTTGCAGTTACCAGAAGCAGAAAGGGACCGAATATACCAGGATGAAAGGGAAAG
GAGCTTGAACGCTGCCTCCGCCATGGGTCCTGCGCCCCTGATAAGCACACCACCCAGCCGCCCT
CCCCAGGTGAAAACAGCTACTATTGCCACTGAGAGGAATGGGAAACCAGAGAACAATACCATGA
ACATTAATGCTTCCATTTATGATGAGATTCAGCAGGAAATGAAGCGCGCTAAAGTGTCCCAAGC
ACTGTTTGCAAAGGTTGCGGCAACCAAAAGCCAGGGATGGTTGTGTGAGCTGTTACGCTGGAAA
GAAGATCCTTCTCCAGAAAACAGGACTCTGTGGGAGAACTTGTCCATGATCCGAAGGTTCCTCA
GTCTTCCTCAGCCAGAGCGTGATGCCATTTACGAGCAGGAGAGCAATGCGGTGCATCACCATGG
CGACAGGCCGCCCCACATCATCCACGTTCCAGCAGAACAGATTCAGAGCCCCTCTCCCACCACC
CTTGGGAAAGGAGAGTCTAGAGGCGTTTTCTTACCAGGCCTGCCGACCCCTGCACCATGGCTCG
GTGCTGCTCCTCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCCACAGGCACCGCCACC
CCCTCAGCCACAACCGCAGCAGCAGGCGGGCCCCAGGCTTCCCCCGCGCCAGCCCACCGTGGCC
TCGCCCGCAGAGTCTGATGAGGAGACCCGGCAGAAGACCCGGCCACGAACCAAAATTTCAGTGG
AAGCCCTGGGAATCCTCCAGAGTTTCATACAAGACGTAGGCCTGTACCCGGACGAAGAGGCCAT
CCAGACTCTGTCCGCCCAACTTGACCTTCCCAAGTACACCATCATCAAGTTCTTTCAGAACCAG
CGGTACTATCTCAAGCACCACGGCAAACTGAAGGACAACTCCGGCTTAGAGGTGGATGTGGCCG
AATACAAAGAAGAGGAGTTGCTCAAGGATTTAGAAGAGAGTGTCCAAGACAAAAATGCTAACAC
CCTTTTCTCGGTGAAACTAGAAGAAGAGCTGTCCGTGGAAGGAAACACAGACATTAATGCTGAT
TTGAAAGACTGAGATCCAAGTAGTATTGTCATTCAACAGAGTGCCACTGGGTATTTACTAACAA
CATGAAAAAAAGTCCACCTTGTATTTGCTCAGAAAAACCTTCGTCGTTCATGGTTTGGCCAATG
AATCTTCAGAAACTTGCACAAACAGGAAAGTTGGAAAAGGAATAGTACAGACTGCACTAAACGT
TTTACTCTGTTTTTACAAACTGCTTGGCAGCCCAGGTGAAGCATCGAGGATTGTTTGGTATTAG
AATTTGTGTTCAAGGGCTGCACCAGTGTGTGTGTGCCCCCTAAGCATGATACCAGAGATTTTTT
TTTTTAATTATTATTCTGGAGCCTCCAACAAGCATTATAACTTCTGTGATTATGATTTCCTTTC
CTTTAATTATTTCTGTAACACTCCACACTGATCTTTGGAAACTCGCCCCTTATTTTAAAGGAAA
AAAAAAA

hide sequence

RefSeq Acc Id:

XM_013361978 ⟹ XP_013217432

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	177,766,685 - 177,842,342 (-)	NCBI
SpeTri2.0	NW_004936473	10,906,059 - 10,980,447 (-)	NCBI

Sequence:

show sequence

CTCATCCTCTCTCTCTCCCCCTCACTCACTGGTCTCCCCAGACGCTCCCAGCCCCGCGTCAATG
GGCAGGGAGAGGGTCCTCGGGGCTGTTGTCAGCGAGGGCGGAATCAAAAGTGGCATTTTAGTGC
CTTTCCGGGGCTTTTCTCGCGACCCGCTGCCCCTCACCCTCTCTGTCCCCTGGTAGATGCCCTC
GTTGGGGGTGCGAGGCTGTAGGGAAAAAGTTTAAGGTTTGTTAATATTAGTCGCTATCGCCGGG
GAGGGGGTGGGGGCGATTGGCAGGGAGGCGAGGTGGCCTTCCCCTCTGCGCGTTCTCCGGGGTT
ATTGGAGAATAATATTGCAAGTGACAGCCAGAAGTAAGACTTTCTGTCCTCACACCGAAGAACC
CGAGCGAGCGGGAGGGAAGAGAGAAGAGGGGACTTTTTTTTTTTTTTTTCTTAAATCCCCTTCC
TTTTTGGAGACCTTGTCCGCAGTGATTTTTTTTTCTTCTTTTTCTTTTTAAGAGATTCCTCAGT
CACCACCTCGTCTCCCCAGCACCACCATAGTGTACAGCTCATAACGGGTTTTGCTTTGTTTTTA
CGATTCCCCCCCCCCCCAACGAATCACTTGTCAGATCAATTTTATCTTCTCCCTCCTGCCTACT
TCCCACTCTCCCCTCCTCCCCATCGAAAAACCCCGTTCTCTGAGGTTAGACATTTTACAAATCA
TATACGTTGATTTTCGAATTGTGATTTTTTTTTTTTAAACCCCTCTCCCATGGCTACTCTTCTA
GACGTTTGTTTCTGCCCTTCCCCCGCTGACGGGGGGCGGGGGTAGGGGAAGAGAAAATAATACA
ATTTCAGGGGAAGTCGCCTTCAGGTCTGCTGCTTTTTTTTTTTTTTAATTAAAAAAAAAAAAGG
ACATAGAAAACATCAGTCTTGAACTTCACTTCAAGAACCCGGGCTGCAAAGGAAATCTCCTTTG
TTTTTGTTATTTATATGCTGTCAAGTTTTGAAGTGGTGATCTTTAGACAGTGACTGAGTATGGA
TCATTTGAACGAGGCAACTCAGGGGAAAGAACATTCAGAAATGTCTAACAATGTAAGCGATCCG
AAGGGTCCACCAGCCAAGATTGCCCGCCTGGAGCAGAACGGGAGCCCACTAGGAAGAGGAAGGC
TTGGGAGCACAGGTGCAAAAATGCAGGGAGTGCCTTTAAAACACTCGGGCCATCTGATGAAAAC
CAACCTTAGGAAAGGAACCATGCTACCAGTTTTCTGCGTGGTAGAACATTATGAAAACGCCATT
GAATATGATTGCAAGGAGGAGCATGCGGAATTTGTGTTGGTGAGAAAGGATATGCTTTTCAACC
AGCTGATAGAAATGGCATTGCTGTCTCTAGGTTATTCACATAGCTCTGCTGCCCAGGCTAAAGG
GCTAATCCAGGTTGGAAAGTGGAATCCAGTTCCACTGTCTTATGTGACAGATGCCCCTGATGCT
ACGGTAGCAGATATGCTTCAAGATGTGTATCATGTGGTCACATTGAAAATTCAGTTACACAGTT
GCCCCAAACTAGAAGACTTGCCTCCCGAACAATGGTCGCACACCACAGTAAGGAATGCTCTGAA
GGACTTACTGAAAGATATGAATCAGAGTTCGTTGGCCAAGGAGTGCCCCCTTTCACAGAGTATG
ATTTCTTCCATTGTGAACAGCACTTACTATGCAAATGTCTCAGCAGCAAAATGTCAAGAATTTG
GAAGGTGGTACAAACATTTCAAGAAGACAAAAGATATGATGGTCGAAATGGATAGTCTTTCTGA
GCTATCCCAGCAAGGTGCCAACCATGTCAACTTTGGCCAGCAGCCGGTCCCAGGGAACACAGCT
GAGCAGCCTCCGTCCCCCGCACAGCTCTCCCATGGCAGCCAGCCCTCTGTCCGGACCCCTCTTC
CAAACCTGCACCCTGGGCTGGTATCAACGCCTATCAGTCCTCAGCTGGTCAACCAGCAGCTGGT
GATGGCCCAGCTACTGAATCAGCAGTATGCAGTGAATAGACTATTAGCCCAGCAGTCCTTAAAC
CAACAGTACTTGAACCACCCTCCCCCTGTCAGTAGATCTATGAATAAGCCTTTGGAGCAACAGG
TTTCAACCAACACAGAGGTGTCTTCCGAAATCTACCAGTGGGTTCGTGATGAACTGAAACGAGC
AGGAATCTCCCAGGCAGTGTTTGCACGTGTGGCTTTTAACAGAACTCAGGGCTTGCTTTCAGAA
ATCCTCCGGAAGGAAGAGGACCCCAAGACTGCATCCCAGTCTTTGCTGGTAAACCTTCGGGCTA
TGCAGAATTTCTTGCAGTTACCAGAAGCAGAAAGGGACCGAATATACCAGGATGAAAGGGAAAG
GAGCTTGAACGCTGCCTCCGCCATGGGTCCTGCGCCCCTGATAAGCACACCACCCAGCCGCCCT
CCCCAGGTGAAAACAGCTACTATTGCCACTGAGAGGAATGGGAAACCAGAGAACAATACCATGA
ACATTAATGCTTCCATTTATGATGAGATTCAGCAGGAAATGAAGCGCGCTAAAGTGTCCCAAGC
ACTGTTTGCAAAGGTTGCGGCAACCAAAAGCCAGGGATGGTTGTGTGAGCTGTTACGCTGGAAA
GAAGATCCTTCTCCAGAAAACAGGACTCTGTGGGAGAACTTGTCCATGATCCGAAGGTTCCTCA
GTCTTCCTCAGCCAGAGCGTGATGCCATTTACGAGCAGGAGAGCAATGCGGTGCATCACCATGG
CGACAGGCCGCCCCACATCATCCACGTTCCAGCAGAACAGATTCAGAGCCCCTCTCCCACCACC
CTTGGGAAAGGAGAGTCTAGAGGCGTTTTCTTACCAGGCCTGCCGACCCCTGCACCATGGCTCG
GTGCTGCTCCTCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCCACAGGCACCGCCACCCCC
TCAGCCACAACCGCAGCAGCAGGCGGGCCCCAGGCTTCCCCCGCGCCAGCCCACCGTGGCCTCG
CCCGCAGAGTCTGATGAGGAGACCCGGCAGAAGACCCGGCCACGAACCAAAATTTCAGTGGAAG
CCCTGGGAATCCTCCAGAGTTTCATACAAGACGTAGGCCTGTACCCGGACGAAGAGGCCATCCA
GACTCTGTCCGCCCAACTTGACCTTCCCAAGTACACCATCATCAAGTTCTTTCAGAACCAGCGG
TACTATCTCAAGCACCACGGCAAACTGAAGGACAACTCCGGCTTAGAGGTGGATGTGGCCGAAT
ACAAAGAAGAGGAGTTGCTCAAGGATTTAGAAGAGAGTGTCCAAGACAAAAATGCTAACACCCT
TTTCTCGGTGAAACTAGAAGAAGAGCTGTCCGTGGAAGGAAACACAGACATTAATGCTGATTTG
AAAGACTGAGATCCAAGTAGTATTGTCATTCAACAGAGTGCCACTGGGTATTTACTAACAACAT
GAAAAAAAGTCCACCTTGTATTTGCTCAGAAAAACCTTCGTCGTTCATGGTTTGGCCAATGAAT
CTTCAGAAACTTGCACAAACAGGAAAGTTGGAAAAGGAATAGTACAGACTGCACTAAACGTTTT
ACTCTGTTTTTACAAACTGCTTGGCAGCCCAGGTGAAGCATCGAGGATTGTTTGGTATTAGAAT
TTGTGTTCAAGGGCTGCACCAGTGTGTGTGTGCCCCCTAAGCATGATACCAGAGATTTTTTTTT
TTAATTATTATTCTGGAGCCTCCAACAAGCATTATAACTTCTGTGATTATGATTTCCTTTCCTT
TAATTATTTCTGTAACACTCCACACTGATCTTTGGAAACTCGCCCCTTATTTTAAAGGAAAAAA
AAAA

hide sequence

RefSeq Acc Id:

XM_021731511 ⟹ XP_021587186

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	177,766,685 - 177,842,342 (-)	NCBI
SpeTri2.0	NW_004936473	10,906,502 - 10,980,915 (-)	NCBI

Sequence:

show sequence

GGGCAGAGACGGCAGCGAGGGGGAGAGCGACCGAGGGAGAGAGAGAGAGAGAAACAGCCCCGTC
CGGGGACTCGCGCTCACACGCACGCACACACAAACACACACACACACCTCTCCCAGTGCCACCC
AGCAACAACCGGCCTCGTCACAACAACAACAGCAACAGCCGCCCTCTAGCCTGCCCGGGGGCCG
TGCGTAAAAGCCTGGGCGACTCCAGAGGACGCTTCCCACCCCCCCTTTTGCATTTCGGGAAACT
CCTGATCAGTTTTGTTGGGTTTCTGGGCTTCTTTCCCCCCCCACCCCCAAGTCCTAGTGCCATT
GTGGTGCTCGTTGTTTACCTCGGACTCTGGCTGAGTGAGAGCTTGGCGACTTTTTGGGGGGAGG
GGGCGGGGAGTTCGTCGCTGCCGAGGCGGTAGAGGTGGCTGGGGTCCCTTCTGATCTTCCTCCT
CCTCCTCCTCCCCCTCCCCCCTCATCCTCTCTCTCTCCCCCTCACTCACTGGTCTCCCCAGACG
CTCCCAGCCCCGCGTCAATGGGCAGGGAGAGGGTCCTCGGGGCTGTTGTCAGCGAGGGCGGAAT
CAAAAGTGGCATTTTAGTGCCTTTCCGGGGCTTTTCTCGCGACCCGCTGCCCCTCACCCTCTCT
GTCCCCTGGTAGATGCCCTCGTTGGGGGTGCGAGGCTGTAGGGAAAAAGTTTAAGGTTTGTTAA
TATTAGTCGCTATCGCCGGGGAGGGGGTGGGGGCGATTGGCAGGGAGGCGAGGTGGCCTTCCCC
TCTGCGCGTTCTCCGGGGTTATTGGAGAATAATATTGCAAGTGACAGCCAGAAGTAAGACTTTC
TGTCCTCACACCGAAGAACCCGAGCGAGCGGGAGGGAAGAGAGAAGAGGGGACTTTTTTTTTTT
TTTTTCTTAAATCCCCTTCCTTTTTGGAGACCTTGTCCGCAGTGATTTTTTTTTCTTCTTTTTC
TTTTTAAGAGATTCCTCAGTCACCACCTCGTCTCCCCAGCACCACCATAGTGTACAGCTCATAA
CGGGTTTTGCTTTGTTTTTACGATTCCCCCCCCCCCCAACGAATCACTTGTCAGATCAATTTTA
TCTTCTCCCTCCTGCCTACTTCCCACTCTCCCCTCCTCCCCATCGAAAAACCCCGTTCTCTGAG
GTTAGACATTTTACAAATCATATACGTTGATTTTCGAATTGTGATTTTTTTTTTTTAAACCCCT
CTCCCATGGCTACTCTTCTAGACGTTTGTTTCTGCCCTTCCCCCGCTGACGGGGGGCGGGGGTA
GGGGAAGAGAAAATAATACAATTTCAGGGGAAGTCGCCTTCAGGTCTGCTGCTTTTTTTTTTTT
TTAATTAAAAAAAAAAAAGGACATAGAAAACATCAGTCTTGAACTTCACTTCAAGAACCCGGGC
TGCAAAGGAAATCTCCTTTGTTTTTGTTATTTATATGCTGTCAAGTTTTGAAGTGGTGAGTTTC
AGGTGATCTTTAGACAGTGACTGAGTATGGATCATTTGAACGAGGCAACTCAGGGGAAAGAACA
TTCAGAAATGTCTAACAATGTAAGCGATCCGAAGGGTCCACCAGCCAAGATTGCCCGCCTGGAG
CAGAACGGGAGCCCACTAGGAAGAGGAAGGCTTGGGAGCACAGGTGCAAAAATGCAGGGAGTGC
CTTTAAAACACTCGGGCCATCTGATGAAAACCAACCTTAGGAAAGGAACCATGCTACCAGTTTT
CTGCGTGGTAGAACATTATGAAAACGCCATTGAATATGATTGCAAGGAGGAGCATGCGGAATTT
GTGTTGGTGAGAAAGGATATGCTTTTCAACCAGCTGATAGAAATGGCATTGCTGTCTCTAGGTT
ATTCACATAGCTCTGCTGCCCAGGCTAAAGGGCTAATCCAGGTTGGAAAGTGGAATCCAGTTCC
ACTGTCTTATGTGACAGATGCCCCTGATGCTACGGTAGCAGATATGCTTCAAGATGTGTATCAT
GTGGTCACATTGAAAATTCAGTTACACAGTTGCCCCAAACTAGAAGACTTGCCTCCCGAACAAT
GGTCGCACACCACAGTAAGGAATGCTCTGAAGGACTTACTGAAAGATATGAATCAGAGTTCGTT
GGCCAAGGAGTGCCCCCTTTCACAGAGTATGATTTCTTCCATTGTGAACAGCACTTACTATGCA
AATGTCTCAGCAGCAAAATGTCAAGAATTTGGAAGGTGGTACAAACATTTCAAGAAGACAAAAG
ATATGATGGTCGAAATGGATAGTCTTTCTGAGCTATCCCAGCAAGGTGCCAACCATGTCAACTT
TGGCCAGCAGCCGGTCCCAGGGAACACAGCTGAGCAGCCTCCGTCCCCCGCACAGCTCTCCCAT
GGCAGCCAGCCCTCTGTCCGGACCCCTCTTCCAAACCTGCACCCTGGGCTGGTATCAACGCCTA
TCAGTCCTCAGCTGGTCAACCAGCAGCTGGTGATGGCCCAGCTACTGAATCAGCAGTATGCAGT
GAATAGACTATTAGCCCAGCAGTCCTTAAACCAACAGTACTTGAACCACCCTCCCCCTGTCAGT
AGATCTATGAATAAGCCTTTGGAGCAACAGGTTTCAACCAACACAGAGGTGTCTTCCGAAATCT
ACCAGTGGGTTCGTGATGAACTGAAACGAGCAGGAATCTCCCAGGCAGTGTTTGCACGTGTGGC
TTTTAACAGAACTCAGGGCTTGCTTTCAGAAATCCTCCGGAAGGAAGAGGACCCCAAGACTGCA
TCCCAGTCTTTGCTGGTAAACCTTCGGGCTATGCAGAATTTCTTGCAGTTACCAGAAGCAGAAA
GGGACCGAATATACCAGGATGAAAGGGAAAGGAGCTTGAACGCTGCCTCCGCCATGGGTCCTGC
GCCCCTGATAAGCACACCACCCAGCCGCCCTCCCCAGGTGAAAACAGCTACTATTGCCACTGAG
AGGAATGGGAAACCAGAGAACAATACCATGAACATTAATGCTTCCATTTATGATGAGATTCAGC
AGGAAATGAAGCGCGCTAAAGTGTCCCAAGCACTGTTTGCAAAGGTTGCGGCAACCAAAAGCCA
GGGATGGTTGTGTGAGCTGTTACGCTGGAAAGAAGATCCTTCTCCAGAAAACAGGACTCTGTGG
GAGAACTTGTCCATGATCCGAAGGTTCCTCAGTCTTCCTCAGCCAGAGCGTGATGCCATTTACG
AGCAGGAGAGCAATGCGGTGCATCACCATGGCGACAGGCCGCCCCACATCATCCACGTTCCAGC
AGAACAGATTCAGAGCCCCTCTCCCACCACCCTTGGGAAAGGAGAGTCTAGAGGCGTTTTCTTA
CCAGGCCTGCCGACCCCTGCACCATGGCTCGGTGCTGCTCCTCAGCAGCAGCAGCAACAGCAGC
AGCAGCAGCAGCAGCCACAGGCACCGCCACCCCCTCAGCCACAACCGCAGCAGCAGGCGGGCCC
CAGGCTTCCCCCGCGCCAGCCCACCGTGGCCTCGCCCGCAGAGTCTGATGAGGAGACCCGGCAG
AAGACCCGGCCACGAACCAAAATTTCAGTGGAAGCCCTGGGAATCCTCCAGAGTTTCATACAAG
ACGTAGGCCTGTACCCGGACGAAGAGGCCATCCAGACTCTGTCCGCCCAACTTGACCTTCCCAA
GTACACCATCATCAAGTTCTTTCAGAACCAGCGGTACTATCTCAAGCACCACGGCAAACTGAAG
GACAACTCCGGCTTAGAGGTGGATGTGGCCGAATACAAAGAAGAGGAGTTGCTCAAGGATTTAG
AAGAGAGTGTCCAAGACAAAAATGCTAACACCCTTTTCTCGGTGAAACTAGAAGAAGAGCTGTC
CGTGGAAGGAAACACAGACATTAATGCTGATTTGAAAGACTGA

hide sequence

RefSeq Acc Id:

XM_021731515 ⟹ XP_021587190

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	177,766,685 - 177,862,478 (-)	NCBI
SpeTri2.0	NW_004936473	10,906,502 - 11,001,007 (-)	NCBI

Sequence:

show sequence

GGGCCCGCACTCGACAGCCACCGCTGCCCCCAACGCTCATGCCTGAGTGATCTTTAGACAGTGA
CTGAGTATGGATCATTTGAACGAGGCAACTCAGGGGAAAGAACATTCAGAAATGTCTAACAATG
TAAGCGATCCGAAGGGTCCACCAGCCAAGATTGCCCGCCTGGAGCAGAACGGGAGCCCACTAGG
AAGAGGAAGGCTTGGGAGCACAGGTGCAAAAATGCAGGGAGTGCCTTTAAAACACTCGGGCCAT
CTGATGAAAACCAACCTTAGGAAAGGAACCATGCTACCAGTTTTCTGCGTGGTAGAACATTATG
AAAACGCCATTGAATATGATTGCAAGGAGGAGCATGCGGAATTTGTGTTGGTGAGAAAGGATAT
GCTTTTCAACCAGCTGATAGAAATGGCATTGCTGTCTCTAGGTTATTCACATAGCTCTGCTGCC
CAGGCTAAAGGGCTAATCCAGGTTGGAAAGTGGAATCCAGTTCCACTGTCTTATGTGACAGATG
CCCCTGATGCTACGGTAGCAGATATGCTTCAAGATGTGTATCATGTGGTCACATTGAAAATTCA
GTTACACAGTTGCCCCAAACTAGAAGACTTGCCTCCCGAACAATGGTCGCACACCACAGTAAGG
AATGCTCTGAAGGACTTACTGAAAGATATGAATCAGAGTTCGTTGGCCAAGGAGTGCCCCCTTT
CACAGAGTATGATTTCTTCCATTGTGAACAGCACTTACTATGCAAATGTCTCAGCAGCAAAATG
TCAAGAATTTGGAAGGTGGTACAAACATTTCAAGAAGACAAAAGATATGATGGTCGAAATGGAT
AGTCTTTCTGAGCTATCCCAGCAAGGTGCCAACCATGTCAACTTTGGCCAGCAGCCGGTCCCAG
GGAACACAGCTGAGCAGCCTCCGTCCCCCGCACAGCTCTCCCATGGCAGCCAGCCCTCTGTCCG
GACCCCTCTTCCAAACCTGCACCCTGGGCTGGTATCAACGCCTATCAGTCCTCAGCTGGTCAAC
CAGCAGCTGGTGATGGCCCAGCTACTGAATCAGCAGTATGCAGTGAATAGACTATTAGCCCAGC
AGTCCTTAAACCAACAGTACTTGAACCACCCTCCCCCTGTCAGTAGATCTATGAATAAGCCTTT
GGAGCAACAGGTTTCAACCAACACAGAGGTGTCTTCCGAAATCTACCAGTGGGTTCGTGATGAA
CTGAAACGAGCAGGAATCTCCCAGGCAGTGTTTGCACGTGTGGCTTTTAACAGAACTCAGGGCT
TGCTTTCAGAAATCCTCCGGAAGGAAGAGGACCCCAAGACTGCATCCCAGTCTTTGCTGGTAAA
CCTTCGGGCTATGCAGAATTTCTTGCAGTTACCAGAAGCAGAAAGGGACCGAATATACCAGGAT
GAAAGGGAAAGGAGCTTGAACGCTGCCTCCGCCATGGGTCCTGCGCCCCTGATAAGCACACCAC
CCAGCCGCCCTCCCCAGGTGAAAACAGCTACTATTGCCACTGAGAGGAATGGGAAACCAGAGAA
CAATACCATGAACATTAATGCTTCCATTTATGATGAGATTCAGCAGGAAATGAAGCGCGCTAAA
GTGTCCCAAGCACTGTTTGCAAAGGTTGCGGCAACCAAAAGCCAGGGATGGTTGTGTGAGCTGT
TACGCTGGAAAGAAGATCCTTCTCCAGAAAACAGGACTCTGTGGGAGAACTTGTCCATGATCCG
AAGGTTCCTCAGTCTTCCTCAGCCAGAGCGTGATGCCATTTACGAGCAGGAGAGCAATGCGGTG
CATCACCATGGCGACAGGCCGCCCCACATCATCCACGTTCCAGCAGAACAGATTCAGAGCCCCT
CTCCCACCACCCTTGGGAAAGGAGAGTCTAGAGGCGTTTTCTTACCAGGCCTGCCGACCCCTGC
ACCATGGCTCGGTGCTGCTCCTCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCCACAG
GCACCGCCACCCCCTCAGCCACAACCGCAGCAGCAGGCGGGCCCCAGGCTTCCCCCGCGCCAGC
CCACCGTGGCCTCGCCCGCAGAGTCTGATGAGGAGACCCGGCAGAAGACCCGGCCACGAACCAA
AATTTCAGTGGAAGCCCTGGGAATCCTCCAGAGTTTCATACAAGACGTAGGCCTGTACCCGGAC
GAAGAGGCCATCCAGACTCTGTCCGCCCAACTTGACCTTCCCAAGTACACCATCATCAAGTTCT
TTCAGAACCAGCGGTACTATCTCAAGCACCACGGCAAACTGAAGGACAACTCCGGCTTAGAGGT
GGATGTGGCCGAATACAAAGAAGAGGAGTTGCTCAAGGATTTAGAAGAGAGTGTCCAAGACAAA
AATGCTAACACCCTTTTCTCGGTGAAACTAGAAGAAGAGCTGTCCGTGGAAGGAAACACAGACA
TTAATGCTGATTTGAAAGACTGA

hide sequence

RefSeq Acc Id:

XM_021731516 ⟹ XP_021587191

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	177,766,685 - 177,856,489 (-)	NCBI
SpeTri2.0	NW_004936473	10,906,502 - 10,995,056 (-)	NCBI

Sequence:

show sequence

GCAGTGCCAGAGAGAACTTCATCATTGTCATCTCATCAAAGACTACTTTTTCAGACCTTTTCTT
TAGGGCTAGATTTGGAGAACAGCCTGTGAAATTTGGAGGGTGATCTTTAGACAGTGACTGAGTA
TGGATCATTTGAACGAGGCAACTCAGGGGAAAGAACATTCAGAAATGTCTAACAATGTAAGCGA
TCCGAAGGGTCCACCAGCCAAGATTGCCCGCCTGGAGCAGAACGGGAGCCCACTAGGAAGAGGA
AGGCTTGGGAGCACAGGTGCAAAAATGCAGGGAGTGCCTTTAAAACACTCGGGCCATCTGATGA
AAACCAACCTTAGGAAAGGAACCATGCTACCAGTTTTCTGCGTGGTAGAACATTATGAAAACGC
CATTGAATATGATTGCAAGGAGGAGCATGCGGAATTTGTGTTGGTGAGAAAGGATATGCTTTTC
AACCAGCTGATAGAAATGGCATTGCTGTCTCTAGGTTATTCACATAGCTCTGCTGCCCAGGCTA
AAGGGCTAATCCAGGTTGGAAAGTGGAATCCAGTTCCACTGTCTTATGTGACAGATGCCCCTGA
TGCTACGGTAGCAGATATGCTTCAAGATGTGTATCATGTGGTCACATTGAAAATTCAGTTACAC
AGTTGCCCCAAACTAGAAGACTTGCCTCCCGAACAATGGTCGCACACCACAGTAAGGAATGCTC
TGAAGGACTTACTGAAAGATATGAATCAGAGTTCGTTGGCCAAGGAGTGCCCCCTTTCACAGAG
TATGATTTCTTCCATTGTGAACAGCACTTACTATGCAAATGTCTCAGCAGCAAAATGTCAAGAA
TTTGGAAGGTGGTACAAACATTTCAAGAAGACAAAAGATATGATGGTCGAAATGGATAGTCTTT
CTGAGCTATCCCAGCAAGGTGCCAACCATGTCAACTTTGGCCAGCAGCCGGTCCCAGGGAACAC
AGCTGAGCAGCCTCCGTCCCCCGCACAGCTCTCCCATGGCAGCCAGCCCTCTGTCCGGACCCCT
CTTCCAAACCTGCACCCTGGGCTGGTATCAACGCCTATCAGTCCTCAGCTGGTCAACCAGCAGC
TGGTGATGGCCCAGCTACTGAATCAGCAGTATGCAGTGAATAGACTATTAGCCCAGCAGTCCTT
AAACCAACAGTACTTGAACCACCCTCCCCCTGTCAGTAGATCTATGAATAAGCCTTTGGAGCAA
CAGGTTTCAACCAACACAGAGGTGTCTTCCGAAATCTACCAGTGGGTTCGTGATGAACTGAAAC
GAGCAGGAATCTCCCAGGCAGTGTTTGCACGTGTGGCTTTTAACAGAACTCAGGGCTTGCTTTC
AGAAATCCTCCGGAAGGAAGAGGACCCCAAGACTGCATCCCAGTCTTTGCTGGTAAACCTTCGG
GCTATGCAGAATTTCTTGCAGTTACCAGAAGCAGAAAGGGACCGAATATACCAGGATGAAAGGG
AAAGGAGCTTGAACGCTGCCTCCGCCATGGGTCCTGCGCCCCTGATAAGCACACCACCCAGCCG
CCCTCCCCAGGTGAAAACAGCTACTATTGCCACTGAGAGGAATGGGAAACCAGAGAACAATACC
ATGAACATTAATGCTTCCATTTATGATGAGATTCAGCAGGAAATGAAGCGCGCTAAAGTGTCCC
AAGCACTGTTTGCAAAGGTTGCGGCAACCAAAAGCCAGGGATGGTTGTGTGAGCTGTTACGCTG
GAAAGAAGATCCTTCTCCAGAAAACAGGACTCTGTGGGAGAACTTGTCCATGATCCGAAGGTTC
CTCAGTCTTCCTCAGCCAGAGCGTGATGCCATTTACGAGCAGGAGAGCAATGCGGTGCATCACC
ATGGCGACAGGCCGCCCCACATCATCCACGTTCCAGCAGAACAGATTCAGAGCCCCTCTCCCAC
CACCCTTGGGAAAGGAGAGTCTAGAGGCGTTTTCTTACCAGGCCTGCCGACCCCTGCACCATGG
CTCGGTGCTGCTCCTCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCCACAGGCACCGC
CACCCCCTCAGCCACAACCGCAGCAGCAGGCGGGCCCCAGGCTTCCCCCGCGCCAGCCCACCGT
GGCCTCGCCCGCAGAGTCTGATGAGGAGACCCGGCAGAAGACCCGGCCACGAACCAAAATTTCA
GTGGAAGCCCTGGGAATCCTCCAGAGTTTCATACAAGACGTAGGCCTGTACCCGGACGAAGAGG
CCATCCAGACTCTGTCCGCCCAACTTGACCTTCCCAAGTACACCATCATCAAGTTCTTTCAGAA
CCAGCGGTACTATCTCAAGCACCACGGCAAACTGAAGGACAACTCCGGCTTAGAGGTGGATGTG
GCCGAATACAAAGAAGAGGAGTTGCTCAAGGATTTAGAAGAGAGTGTCCAAGACAAAAATGCTA
ACACCCTTTTCTCGGTGAAACTAGAAGAAGAGCTGTCCGTGGAAGGAAACACAGACATTAATGC
TGATTTGAAAGACTGA

hide sequence

RefSeq Acc Id:

XM_040289843 ⟹ XP_040145777

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	177,766,685 - 177,842,342 (-)	NCBI

RefSeq Acc Id:

XM_040289844 ⟹ XP_040145778

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	177,766,685 - 177,842,342 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005317310	(Get FASTA)	NCBI Sequence Viewer
	XP_013217432	(Get FASTA)	NCBI Sequence Viewer
	XP_021587186	(Get FASTA)	NCBI Sequence Viewer
	XP_021587190	(Get FASTA)	NCBI Sequence Viewer
	XP_021587191	(Get FASTA)	NCBI Sequence Viewer
	XP_040145777	(Get FASTA)	NCBI Sequence Viewer
	XP_040145778	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000009742.3
	ENSSTOP00000026795.1
	ENSSTOP00000030433.1
GenBank Protein	KAG3279466	(Get FASTA)	NCBI Sequence Viewer
	KAG3279467	(Get FASTA)	NCBI Sequence Viewer
	KAG3279468	(Get FASTA)	NCBI Sequence Viewer
	KAG3279469	(Get FASTA)	NCBI Sequence Viewer
	KAG3279470	(Get FASTA)	NCBI Sequence Viewer
	KAG3279471	(Get FASTA)	NCBI Sequence Viewer
	KAG3279472	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_013217432 ⟸ XM_013361978
- Peptide Label:	isoform X2
- UniProtKB:	I3MG86 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDHLNEATQGKEHSEMSNNVSDPKGPPAKIARLEQNGSPLGRGRLGSTGAKMQGVPLKHSGHLM KTNLRKGTMLPVFCVVEHYENAIEYDCKEEHAEFVLVRKDMLFNQLIEMALLSLGYSHSSAAQA KGLIQVGKWNPVPLSYVTDAPDATVADMLQDVYHVVTLKIQLHSCPKLEDLPPEQWSHTTVRNA LKDLLKDMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQEFGRWYKHFKKTKDMMVEMDSL SELSQQGANHVNFGQQPVPGNTAEQPPSPAQLSHGSQPSVRTPLPNLHPGLVSTPISPQLVNQQ LVMAQLLNQQYAVNRLLAQQSLNQQYLNHPPPVSRSMNKPLEQQVSTNTEVSSEIYQWVRDELK RAGISQAVFARVAFNRTQGLLSEILRKEEDPKTASQSLLVNLRAMQNFLQLPEAERDRIYQDER ERSLNAASAMGPAPLISTPPSRPPQVKTATIATERNGKPENNTMNINASIYDEIQQEMKRAKVS QALFAKVAATKSQGWLCELLRWKEDPSPENRTLWENLSMIRRFLSLPQPERDAIYEQESNAVHH HGDRPPHIIHVPAEQIQSPSPTTLGKGESRGVFLPGLPTPAPWLGAAPQQQQQQQQQQQPQAPP PPQPQPQQQAGPRLPPRQPTVASPAESDEETRQKTRPRTKISVEALGILQSFIQDVGLYPDEEA IQTLSAQLDLPKYTIIKFFQNQRYYLKHHGKLKDNSGLEVDVAEYKEEELLKDLEESVQDKNAN TLFSVKLEEELSVEGNTDINADLKD hide sequence

RefSeq Acc Id:

XP_005317310 ⟸ XM_005317253

- Peptide Label:

isoform X1

- Sequence:

show sequence

MDHLNEATQGKEHSEMSNNVSDPKGPPAKIARLEQNGSPLGRGRLGSTGAKMQGVPLKHSGHLM
KTNLRKGTMLPVFCVVEHYENAIEYDCKEEHAEFVLVRKDMLFNQLIEMALLSLGYSHSSAAQA
KGLIQVGKWNPVPLSYVTDAPDATVADMLQDVYHVVTLKIQLHSCPKLEDLPPEQWSHTTVRNA
LKDLLKDMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQEFGRWYKHFKKTKDMMVEMDSL
SELSQQGANHVNFGQQPVPGNTAEQPPSPAQLSHGSQPSVRTPLPNLHPGLVSTPISPQLVNQQ
LVMAQLLNQQYAVNRLLAQQSLNQQYLNHPPPVSRSMNKPLEQQVSTNTEVSSEIYQWVRDELK
RAGISQAVFARVAFNRTQGLLSEILRKEEDPKTASQSLLVNLRAMQNFLQLPEAERDRIYQDER
ERSLNAASAMGPAPLISTPPSRPPQVKTATIATERNGKPENNTMNINASIYDEIQQEMKRAKVS
QALFAKVAATKSQGWLCELLRWKEDPSPENRTLWENLSMIRRFLSLPQPERDAIYEQESNAVHH
HGDRPPHIIHVPAEQIQSPSPTTLGKGESRGVFLPGLPTPAPWLGAAPQQQQQQQQQQQQPQAP
PPPQPQPQQQAGPRLPPRQPTVASPAESDEETRQKTRPRTKISVEALGILQSFIQDVGLYPDEE
AIQTLSAQLDLPKYTIIKFFQNQRYYLKHHGKLKDNSGLEVDVAEYKEEELLKDLEESVQDKNA
NTLFSVKLEEELSVEGNTDINADLKD

hide sequence

RefSeq Acc Id:

XP_021587190 ⟸ XM_021731515

- Peptide Label:

isoform X1

- Sequence:

show sequence

MDHLNEATQGKEHSEMSNNVSDPKGPPAKIARLEQNGSPLGRGRLGSTGAKMQGVPLKHSGHLM
KTNLRKGTMLPVFCVVEHYENAIEYDCKEEHAEFVLVRKDMLFNQLIEMALLSLGYSHSSAAQA
KGLIQVGKWNPVPLSYVTDAPDATVADMLQDVYHVVTLKIQLHSCPKLEDLPPEQWSHTTVRNA
LKDLLKDMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQEFGRWYKHFKKTKDMMVEMDSL
SELSQQGANHVNFGQQPVPGNTAEQPPSPAQLSHGSQPSVRTPLPNLHPGLVSTPISPQLVNQQ
LVMAQLLNQQYAVNRLLAQQSLNQQYLNHPPPVSRSMNKPLEQQVSTNTEVSSEIYQWVRDELK
RAGISQAVFARVAFNRTQGLLSEILRKEEDPKTASQSLLVNLRAMQNFLQLPEAERDRIYQDER
ERSLNAASAMGPAPLISTPPSRPPQVKTATIATERNGKPENNTMNINASIYDEIQQEMKRAKVS
QALFAKVAATKSQGWLCELLRWKEDPSPENRTLWENLSMIRRFLSLPQPERDAIYEQESNAVHH
HGDRPPHIIHVPAEQIQSPSPTTLGKGESRGVFLPGLPTPAPWLGAAPQQQQQQQQQQQQPQAP
PPPQPQPQQQAGPRLPPRQPTVASPAESDEETRQKTRPRTKISVEALGILQSFIQDVGLYPDEE
AIQTLSAQLDLPKYTIIKFFQNQRYYLKHHGKLKDNSGLEVDVAEYKEEELLKDLEESVQDKNA
NTLFSVKLEEELSVEGNTDINADLKD

hide sequence

RefSeq Acc Id:

XP_021587191 ⟸ XM_021731516

- Peptide Label:

isoform X1

- Sequence:

show sequence

MDHLNEATQGKEHSEMSNNVSDPKGPPAKIARLEQNGSPLGRGRLGSTGAKMQGVPLKHSGHLM
KTNLRKGTMLPVFCVVEHYENAIEYDCKEEHAEFVLVRKDMLFNQLIEMALLSLGYSHSSAAQA
KGLIQVGKWNPVPLSYVTDAPDATVADMLQDVYHVVTLKIQLHSCPKLEDLPPEQWSHTTVRNA
LKDLLKDMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQEFGRWYKHFKKTKDMMVEMDSL
SELSQQGANHVNFGQQPVPGNTAEQPPSPAQLSHGSQPSVRTPLPNLHPGLVSTPISPQLVNQQ
LVMAQLLNQQYAVNRLLAQQSLNQQYLNHPPPVSRSMNKPLEQQVSTNTEVSSEIYQWVRDELK
RAGISQAVFARVAFNRTQGLLSEILRKEEDPKTASQSLLVNLRAMQNFLQLPEAERDRIYQDER
ERSLNAASAMGPAPLISTPPSRPPQVKTATIATERNGKPENNTMNINASIYDEIQQEMKRAKVS
QALFAKVAATKSQGWLCELLRWKEDPSPENRTLWENLSMIRRFLSLPQPERDAIYEQESNAVHH
HGDRPPHIIHVPAEQIQSPSPTTLGKGESRGVFLPGLPTPAPWLGAAPQQQQQQQQQQQQPQAP
PPPQPQPQQQAGPRLPPRQPTVASPAESDEETRQKTRPRTKISVEALGILQSFIQDVGLYPDEE
AIQTLSAQLDLPKYTIIKFFQNQRYYLKHHGKLKDNSGLEVDVAEYKEEELLKDLEESVQDKNA
NTLFSVKLEEELSVEGNTDINADLKD

hide sequence

RefSeq Acc Id:

XP_021587186 ⟸ XM_021731511

- Peptide Label:

isoform X1

- Sequence:

show sequence

MDHLNEATQGKEHSEMSNNVSDPKGPPAKIARLEQNGSPLGRGRLGSTGAKMQGVPLKHSGHLM
KTNLRKGTMLPVFCVVEHYENAIEYDCKEEHAEFVLVRKDMLFNQLIEMALLSLGYSHSSAAQA
KGLIQVGKWNPVPLSYVTDAPDATVADMLQDVYHVVTLKIQLHSCPKLEDLPPEQWSHTTVRNA
LKDLLKDMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQEFGRWYKHFKKTKDMMVEMDSL
SELSQQGANHVNFGQQPVPGNTAEQPPSPAQLSHGSQPSVRTPLPNLHPGLVSTPISPQLVNQQ
LVMAQLLNQQYAVNRLLAQQSLNQQYLNHPPPVSRSMNKPLEQQVSTNTEVSSEIYQWVRDELK
RAGISQAVFARVAFNRTQGLLSEILRKEEDPKTASQSLLVNLRAMQNFLQLPEAERDRIYQDER
ERSLNAASAMGPAPLISTPPSRPPQVKTATIATERNGKPENNTMNINASIYDEIQQEMKRAKVS
QALFAKVAATKSQGWLCELLRWKEDPSPENRTLWENLSMIRRFLSLPQPERDAIYEQESNAVHH
HGDRPPHIIHVPAEQIQSPSPTTLGKGESRGVFLPGLPTPAPWLGAAPQQQQQQQQQQQQPQAP
PPPQPQPQQQAGPRLPPRQPTVASPAESDEETRQKTRPRTKISVEALGILQSFIQDVGLYPDEE
AIQTLSAQLDLPKYTIIKFFQNQRYYLKHHGKLKDNSGLEVDVAEYKEEELLKDLEESVQDKNA
NTLFSVKLEEELSVEGNTDINADLKD

hide sequence

RefSeq Acc Id:	XP_040145778 ⟸ XM_040289844
- Peptide Label:	isoform X4
- UniProtKB:	A0A287DA60 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040145777 ⟸ XM_040289843
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSSTOP00000030433 ⟸ ENSSTOT00000036320

Ensembl Acc Id:

ENSSTOP00000026795 ⟸ ENSSTOT00000034715

Ensembl Acc Id:

ENSSTOP00000009742 ⟸ ENSSTOT00000010860

Protein Domains

CUT CUTL Homeobox ULD

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000010856	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000010860.3	UniProtKB/TrEMBL
	ENSSTOT00000034715.1	UniProtKB/TrEMBL
	ENSSTOT00000036320.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.260.40	UniProtKB/TrEMBL
	1.10.260.70	UniProtKB/TrEMBL
	3.10.20.710	UniProtKB/TrEMBL
	Homeodomain-like	UniProtKB/TrEMBL
InterPro	CUT_dom	UniProtKB/TrEMBL
	CUTL	UniProtKB/TrEMBL
	Homeobox-like_sf	UniProtKB/TrEMBL
	Homeobox_dom	UniProtKB/TrEMBL
	Lambda_DNA-bd_dom_sf	UniProtKB/TrEMBL
	SATB1/SATB2	UniProtKB/TrEMBL
	SATB_CUTL_sf	UniProtKB/TrEMBL
	SATB_ULD_sf	UniProtKB/TrEMBL
	ULD	UniProtKB/TrEMBL
NCBI Gene	Satb1	ENTREZGENE
PANTHER	DNA-BINDING PROTEIN SATB1	UniProtKB/TrEMBL
	PTHR15116	UniProtKB/TrEMBL
Pfam	CUT	UniProtKB/TrEMBL
	CUTL	UniProtKB/TrEMBL
	Homeodomain	UniProtKB/TrEMBL
	ULD	UniProtKB/TrEMBL
PROSITE	CUT	UniProtKB/TrEMBL
	CUTL	UniProtKB/TrEMBL
	HOMEOBOX_2	UniProtKB/TrEMBL
	ULD	UniProtKB/TrEMBL
SMART	CUT	UniProtKB/TrEMBL
	HOX	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46689	UniProtKB/TrEMBL
	SSF47413	UniProtKB/TrEMBL
UniProt	A0A287DA60	ENTREZGENE, UniProtKB/TrEMBL
	I3MG86	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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