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Gene: Satb1 (SATB homeobox 1) Rattus norvegicus
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Symbol: Satb1
Name: SATB homeobox 1
Description: Predicted to have DNA-binding transcription repressor activity, RNA polymerase II-specific; RNA polymerase II regulatory region sequence-specific DNA binding activity; and chromatin binding activity. Predicted to be involved in several processes, including T cell activation; chromatin organization; and negative regulation of transcription by RNA polymerase II. Predicted to localize to the PML body; nuclear heterochromatin; and nuclear matrix. Orthologous to human SATB1 (SATB homeobox 1); INTERACTS WITH (RS)-amphetamine; (S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: DNA-binding protein SATB1; LOC316164; special AT-rich sequence binding protein 1
Orthologs:
Homo sapiens (human) : SATB1 (SATB homeobox 1)  HGNC  Alliance
Mus musculus (house mouse) : Satb1 (special AT-rich sequence binding protein 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Satb1 (SATB homeobox 1)
Pan paniscus (bonobo/pygmy chimpanzee) : SATB1 (SATB homeobox 1)
Canis lupus familiaris (dog) : SATB1 (SATB homeobox 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Satb1 (SATB homeobox 1)
Sus scrofa (pig) : SATB1 (SATB homeobox 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.092,181,135 - 2,277,949 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.092,129,797 - 2,224,329 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.493,307,651 - 3,391,348 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.193,307,650 - 3,391,345 (+)NCBI
Celera91,577,500 - 1,650,421 (-)NCBICelera
Cytogenetic Map9q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Satb1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1305561
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.