Cmtm3 (CKLF like MARVEL transmembrane domain containing 3)

Gene: Cmtm3 (CKLF like MARVEL transmembrane domain containing 3) Ictidomys tridecemlineatus

Analyze

Symbol:

Cmtm3

Name:

CKLF like MARVEL transmembrane domain containing 3

RGD ID:

12589069

Description:

INVOLVED IN blastocyst hatching (ortholog); positive regulation of B cell receptor signaling pathway (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); cataract 5 multiple types (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN cytoplasmic vesicle (ortholog); cytosol (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

CKLF-like MARVEL transmembrane domain-containing protein 3

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	42,652,485 - 42,662,194 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	16,929,628 - 16,931,385 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936475	16,929,726 - 16,935,403 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant dyskeratosis congenita 6 (ISO)

cataract 5 multiple types (ISO)

Experimental Liver Cirrhosis (ISO)

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

blastocyst hatching (IEA,ISO)

positive regulation of B cell receptor signaling pathway (IEA,ISO)

Cellular Component

cytoplasm (IEA)

cytoplasmic vesicle (IEA,ISO)

cytosol (IEA,ISO)

membrane (IEA)

nuclear membrane (IEA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Cmtm3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	42,652,485 - 42,662,194 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	16,929,628 - 16,931,385 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936475	16,929,726 - 16,935,403 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CMTM3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	66,603,996 - 66,613,892 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	66,603,874 - 66,613,892 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	66,637,899 - 66,647,795 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	65,195,703 - 65,205,296 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	16	65,195,713 - 65,205,294	NCBI
Celera	16	51,144,695 - 51,154,288 (+)	NCBI		Celera
Cytogenetic Map	16	q22.1	NCBI
HuRef	16	52,513,869 - 52,523,565 (+)	NCBI		HuRef
CHM1_1	16	68,045,115 - 68,054,938 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	72,397,883 - 72,408,187 (+)	NCBI		T2T-CHM13v2.0

Cmtm3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	105,065,993 - 105,074,304 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	105,066,042 - 105,074,304 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	104,339,383 - 104,347,672 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	104,339,410 - 104,347,672 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	106,864,494 - 106,871,572 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	107,229,723 - 107,236,801 (+)	NCBI		MGSCv36	mm8
Celera	8	108,574,852 - 108,578,767 (+)	NCBI		Celera
Cytogenetic Map	8	D3	NCBI
cM Map	8	53.04	NCBI

Cmtm3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	629,000 - 637,152 (-)	NCBI		GRCr8
mRatBN7.2	19	622,563 - 630,721 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	604,458 - 629,790 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	618,378 - 625,233 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	1,385,179 - 1,392,034 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	660,393 - 667,248 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	830,874 - 838,528 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	830,877 - 838,099 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	829,210 - 836,752 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	579,430 - 586,297 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	19	579,428 - 586,653 (-)	NCBI
Celera	19	618,503 - 625,370 (-)	NCBI		Celera
Cytogenetic Map	19	p14	NCBI

Cmtm3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955433	23,178,061 - 23,185,666 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955433	23,178,062 - 23,185,666 (+)	NCBI	ChiLan1.0	ChiLan1.0

CMTM3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	76,104,957 - 76,114,452 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	82,016,178 - 82,026,869 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	46,920,341 - 46,930,047 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	66,022,704 - 66,031,525 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	66,022,698 - 66,031,525 (+)	Ensembl	panpan1.1		panPan2

CMTM3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	82,660,995 - 82,667,360 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	82,661,256 - 82,667,372 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	82,649,435 - 82,655,885 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	83,097,745 - 83,104,133 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	5	82,920,762 - 82,927,149 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	82,607,803 - 82,614,213 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	83,246,277 - 83,252,668 (-)	NCBI		UU_Cfam_GSD_1.0

CMTM3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	27,308,141 - 27,317,308 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	27,308,146 - 27,320,449 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

CMTM3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	52,302,606 - 52,312,277 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	52,303,288 - 52,311,165 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	23,602,277 - 23,611,446 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cmtm3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	19,830,839 - 19,839,430 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624746	19,830,839 - 19,840,350 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021721001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010004409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000020475 ⟹ ENSSTOP00000015491

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936475	16,929,628 - 16,931,385 (+)	Ensembl

RefSeq Acc Id:

XM_021721001 ⟹ XP_021576676

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	42,652,485 - 42,662,194 (-)	NCBI
SpeTri2.0	NW_004936475	16,929,726 - 16,935,403 (+)	NCBI

Sequence:

show sequence

CCTACTTCCCTACAGGGTCTTTCCTTTATCACCTTCATCTGCTATGTGGTATCCTCAGCGTCTG
CCTTCCTCACAGTGCCTCTGCTGGAGTTTCTGCTGGCCCTCTACTTCCTCTTTGCTGATGCCAT
GCAGCTGAACGATAAGTGGCAGGGCTTGTGCTGGCCCATGATGGACTTCCTGCGCTGTGTCACC
GCTGCCCTGATCTACTTCGTCATTTCCATCACAGCCGTCGCCAAATACTCAGATGGGGCTTACA
AAGCAGCTGGGGTTTTTGGCTTCTTCGCCACCATCGTGTTTGCAATTGACTTCTACCTGATCTT
TAACAACGTGGCTAAATTCCTCAAACAAGGAGACACCACAGAGGAGAACACAGCCCAGAGGGCA
GAAGAGGAGAATTCCGACTCTGACTCTGACTGAAGGCCTGCCCATGCCAGCAACCTGAACCACA
CAGGACCTTCAGGCCAGCACCTGCCTGACATGCTGAGGAAGCATGTCCAGGGGAAGCTATGTGT
CAGGAGGAAGACTGCCCAATGGCCCTCCCCACTGCCTCAAGTTTACACTCCTGAGCCCAGCACA
TGAGACTGCACTCCTTGGCTTAGTGCTGTTGAACCACTCCACAAGTGAGGGCATCTTGAATATT
CCACCTCTTCCCATTCCTGTCTGCATACCTTAAGCCCTTCAACCTCAATACTAAAGACAAGCAC
AAAGAGACGCAGCAGACAGAGCTGTGTTACTGCCTGCCACAGCAGTCAGCTCCGGCTGCAGGGC
TGAGTCAGGGCGGGAGGGGGATGGCCTGTTTCAGCTAACAGATGTGAACAGAGACAGAACCACT
GCAGGCCAGCCCACCAGGGCCCCGTGGCCTTTGCATGGAGTGCCCCTGCTCACACAGCACTTTG
GTAAGGAATCTTTTGTTCAAGGAGCACAAGTTCCTTCCTCATTGTGAAACAGGAAGGAAACTGA
CCTTGGCCTTACTGTCCAGGAGTGGATGACACCCACCCAGCACTTCACACTTGGAAACATCTTC
AGGTGAGATAACTGTTCCAAGTCTAACCCTGTTTCAGACAGGAGCTCACAGATGCACAGATCAG
GGCAACACAGAGGAAACCCATTGATCCATGGCAGTGACCATGTCATGGGCAGCTGGGCAGGCCC
AGCCAAACCTTTCTGGTGACAAATGTTCTCATCATCCTTCCTTCTGGATACTGGGGCAGGTCTA
CTGACCACCTCATGAGAGATGAGCCCTCTGTATTTGCCTAAGGATTTTTTAGTGTTATATATCT
TTGATGGCATTTTGTACCTTTTTATAATTTTTTATACAAAAGCAGCTTTAACAAATGGCATTTT
CTGTGAGGCAAGAGGCCTCATGAATGAGCCAAAGTTCTGACCCATGTCTTGGGCACTTATAACC
TTATTCTTCTCATGCATGTGAATCTCCTAACCTGAAAAAAAAGCGTTTAATGGATTAAACCAGA
CTGACTACCT

hide sequence

Protein Sequences


Protein RefSeqs	XP_021576676	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000015491.2
GenBank Protein	KAG3257127	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_021576676 ⟸ XM_021721001
- Sequence:	show sequence PTSLQGLSFITFICYVVSSASAFLTVPLLEFLLALYFLFADAMQLNDKWQGLCWPMMDFLRCVT AALIYFVISITAVAKYSDGAYKAAGVFGFFATIVFAIDFYLIFNNVAKFLKQGDTTEENTAQRA EEENSDSDSD hide sequence

RefSeq Acc Id:

ENSSTOP00000015491 ⟸ ENSSTOT00000020475

Protein Domains

MARVEL

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000026680	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000020475.2	UniProtKB/TrEMBL
InterPro	Marvel	UniProtKB/TrEMBL
NCBI Gene	Cmtm3	ENTREZGENE
PANTHER	CKLF-LIKE MARVEL TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN 3	UniProtKB/TrEMBL
	MARVEL-CONTAINING POTENTIAL LIPID RAFT-ASSOCIATED PROTEIN	UniProtKB/TrEMBL
Pfam	MARVEL	UniProtKB/TrEMBL
PROSITE	MARVEL	UniProtKB/TrEMBL
UniProt	I3MTP6_ICTTR	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD