Psmd2 (proteasome 26S subunit ubiquitin receptor, non-ATPase 2) - Rat Genome Database

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Gene: Psmd2 (proteasome 26S subunit ubiquitin receptor, non-ATPase 2) Ictidomys tridecemlineatus
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Symbol: Psmd2
Name: proteasome 26S subunit ubiquitin receptor, non-ATPase 2
RGD ID: 12573230
Description: ENCODES a protein that exhibits enzyme regulator activity (inferred); INVOLVED IN proteasome-mediated ubiquitin-dependent protein catabolic process (inferred); regulation of protein catabolic process (inferred); ASSOCIATED WITH 3-methylcrotonyl-CoA carboxylase 1 deficiency (ortholog); congenital disorder of glycosylation Id (ortholog); Currarino syndrome (ortholog); FOUND IN nucleus (inferred); proteasome accessory complex (inferred); proteasome complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 26S proteasome non-ATPase regulatory subunit 2; proteasome 26S subunit, non-ATPase 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602119,479,115 - 119,488,470 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365785,570,817 - 5,580,617 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365785,570,969 - 5,580,334 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Psmd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602119,479,115 - 119,488,470 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365785,570,817 - 5,580,617 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365785,570,969 - 5,580,334 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PSMD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383184,299,241 - 184,309,050 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3184,299,198 - 184,309,050 (+)EnsemblGRCh38hg38GRCh38
GRCh373184,017,029 - 184,026,838 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363185,499,716 - 185,509,534 (+)NCBINCBI36Build 36hg18NCBI36
Build 343185,499,723 - 185,509,542NCBI
Celera3182,457,704 - 182,467,523 (+)NCBICelera
Cytogenetic Map3q27.1NCBI
HuRef3181,423,849 - 181,433,806 (+)NCBIHuRef
CHM1_13183,981,343 - 183,991,300 (+)NCBICHM1_1
T2T-CHM13v2.03187,108,522 - 187,118,326 (+)NCBIT2T-CHM13v2.0
Psmd2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391620,469,872 - 20,482,164 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1620,470,402 - 20,482,164 (+)EnsemblGRCm39 Ensembl
GRCm381620,651,122 - 20,663,414 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1620,651,652 - 20,663,414 (+)EnsemblGRCm38mm10GRCm38
MGSCv371620,651,725 - 20,663,487 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361620,565,238 - 20,576,957 (+)NCBIMGSCv36mm8
Celera1621,216,674 - 21,228,436 (+)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1612.49NCBI
Psmd2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81193,752,761 - 93,763,388 (-)NCBIGRCr8
mRatBN7.21180,248,364 - 80,258,991 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1180,248,364 - 80,259,043 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1188,971,063 - 88,981,690 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01181,624,481 - 81,635,108 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01180,685,546 - 80,696,173 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01183,934,098 - 83,944,725 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1183,934,087 - 83,944,763 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01187,006,146 - 87,016,773 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41182,478,177 - 82,488,804 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11182,535,765 - 82,546,399 (-)NCBI
Celera1179,088,072 - 79,098,699 (-)NCBICelera
Cytogenetic Map11q23NCBI
Psmd2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542023,184,751 - 23,194,809 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542023,184,914 - 23,194,809 (-)NCBIChiLan1.0ChiLan1.0
PSMD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22182,172,462 - 182,182,374 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13182,177,192 - 182,187,091 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03181,336,634 - 181,346,471 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13189,818,655 - 189,828,596 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3189,818,655 - 189,828,596 (+)Ensemblpanpan1.1panPan2
PSMD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13417,180,119 - 17,189,298 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3417,180,098 - 17,189,303 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3421,266,238 - 21,275,472 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03417,087,733 - 17,097,170 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3417,087,723 - 17,097,159 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13417,124,866 - 17,134,298 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03417,120,951 - 17,130,382 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03417,350,119 - 17,359,348 (+)NCBIUU_Cfam_GSD_1.0
PSMD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13122,187,466 - 122,199,400 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113122,187,500 - 122,199,397 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213131,627,272 - 131,639,168 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PSMD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1155,111,127 - 5,121,159 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl155,110,989 - 5,121,099 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606313,888,809 - 13,899,029 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Psmd2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473072,286,324 - 72,297,465 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473072,286,625 - 72,297,415 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000008250   ⟹   ENSSTOP00000007390
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365785,571,079 - 5,580,251 (-)Ensembl
Ensembl Acc Id: ENSSTOT00000037389   ⟹   ENSSTOP00000025149
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365785,570,817 - 5,580,617 (-)Ensembl
RefSeq Acc Id: XM_005331053   ⟹   XP_005331110
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405602119,479,115 - 119,488,470 (-)NCBI
SpeTri2.0NW_0049365785,570,969 - 5,580,334 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040270187   ⟹   XP_040126121
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405602119,479,115 - 119,488,470 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005331110 (Get FASTA)   NCBI Sequence Viewer  
  XP_040126121 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000007390.3
  ENSSTOP00000025149.1
GenBank Protein KAG3271176 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005331110   ⟸   XM_005331053
- Peptide Label: isoform X2
- UniProtKB: A0A287CV43 (UniProtKB/TrEMBL),   I3MBA5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040126121   ⟸   XM_040270187
- Peptide Label: isoform X1
- UniProtKB: I3MBA5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000007390   ⟸   ENSSTOT00000008250
Ensembl Acc Id: ENSSTOP00000025149   ⟸   ENSSTOT00000037389

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000008234 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000008250.3 UniProtKB/TrEMBL
  ENSSTOT00000037389.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro 26S_Psome_Rpn1 UniProtKB/TrEMBL
  ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Proteasome/cyclosome_rpt UniProtKB/TrEMBL
  RPN1_C UniProtKB/TrEMBL
  RPN1_N UniProtKB/TrEMBL
NCBI Gene Psmd2 ENTREZGENE
PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT UniProtKB/TrEMBL
  26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 2 UniProtKB/TrEMBL
Pfam PC_rep UniProtKB/TrEMBL
  RPN1_C UniProtKB/TrEMBL
  RPN1_RPN2_N UniProtKB/TrEMBL
PIRSF 26S_Psome_Rpn1 UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A287CV43 ENTREZGENE, UniProtKB/TrEMBL
  I3MBA5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-02 Psmd2  proteasome 26S subunit ubiquitin receptor, non-ATPase 2  Psmd2  proteasome 26S subunit, non-ATPase 2  Symbol and/or name change 5135510 APPROVED