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Gene: Capn9 (calpain 9) Ictidomys tridecemlineatus

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Symbol:

Capn9

Name:

calpain 9

RGD ID:

12558538

Description:

ENCODES a protein that exhibits calcium ion binding (inferred); calcium-dependent cysteine-type endopeptidase activity (inferred); cysteine-type peptidase activity (inferred); INVOLVED IN proteolysis (inferred); ASSOCIATED WITH Actin-Accumulation Myopathy (ortholog); congenital disorder of glycosylation type IIq (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN cytoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

calpain 9, transcript variant X1; calpain 9, transcript variant X2; calpain 9, transcript variant X3; calpain-9

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CAPN9 (calpain 9)	NCBI	Ortholog
Mus musculus (house mouse):	Capn9 (calpain 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Capn9 (calpain 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Capn9 (calpain 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CAPN9 (calpain 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CAPN9 (calpain 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CAPN9 (calpain 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CAPN9 (calpain 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Capn9 (calpain 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	43,506,573 - 43,534,017 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936484	19,671,964 - 19,699,161 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936484	19,671,799 - 19,699,161 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Capn9	Squirrel	hypertension		ISO	Capn9 (Rattus norvegicus)	9068941	associated with high salt diet and mRNA:decreased expression:heart (rat)	RGD	PMID:15665521 and REF_RGD_ID:405101696
Capn9	Squirrel	stomach cancer		ISO	CAPN9 (Homo sapiens)	9068941		RGD	PMID:10835488 and REF_RGD_ID:734688

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Capn9	Squirrel	Actin-Accumulation Myopathy		ISO	CAPN9 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Actin accumulation myopathy	ClinVar	PMID:28492532
Capn9	Squirrel	congenital disorder of glycosylation type IIq		ISO	CAPN9 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Congenital disorder of glycosylation and type IIq	ClinVar	PMID:24784932 more ...
Capn9	Squirrel	gastrointestinal stromal tumor		ISO	CAPN9 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Gastrointestinal stromal tumor	ClinVar	PMID:28492532
Capn9	Squirrel	parathyroid carcinoma		ISO	CAPN9 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Parathyroid carcinoma	ClinVar	PMID:28492532

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Capn9	Squirrel	proteolysis	involved_in	IEA	PANTHER:PTN000021923	150520179		TreeGrafter	GO_REF:0000118
Capn9	Squirrel	proteolysis	involved_in	IEA	UniProtKB-KW:KW-0645	150520179		UniProt	GO_REF:0000043
Capn9	Squirrel	proteolysis	involved_in	IEA	InterPro:IPR001300 and InterPro:IPR022684	150520179		InterPro	GO_REF:0000002

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Capn9	Squirrel	cytoplasm	located_in	IEA	PANTHER:PTN000021923	150520179		TreeGrafter	GO_REF:0000118

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Capn9	Squirrel	calcium ion binding	enables	IEA	InterPro:IPR002048	150520179		InterPro	GO_REF:0000002
Capn9	Squirrel	calcium-dependent cysteine-type endopeptidase activity	enables	IEA	PANTHER:PTN000021923	150520179		TreeGrafter	GO_REF:0000118
Capn9	Squirrel	calcium-dependent cysteine-type endopeptidase activity	enables	IEA	InterPro:IPR001300 and InterPro:IPR022684	150520179		InterPro	GO_REF:0000002
Capn9	Squirrel	cysteine-type peptidase activity	enables	IEA	UniProtKB-KW:KW-0788	150520179		UniProt	GO_REF:0000043
Capn9	Squirrel	cysteine-type peptidase activity	enables	IEA	UniRule:UR000413271	150520179		UniProt	GO_REF:0000104
Capn9	Squirrel	hydrolase activity	enables	IEA	UniProtKB-KW:KW-0378	150520179		UniProt	GO_REF:0000043
Capn9	Squirrel	hydrolase activity	enables	IEA	UniRule:UR000413271	150520179		UniProt	GO_REF:0000104
Capn9	Squirrel	metal ion binding	enables	IEA	UniProtKB-KW:KW-0479	150520179		UniProt	GO_REF:0000043
Capn9	Squirrel	peptidase activity	enables	IEA	UniProtKB-KW:KW-0645	150520179		UniProt	GO_REF:0000043
Capn9	Squirrel	peptidase activity	enables	IEA	UniRule:UR000413271	150520179		UniProt	GO_REF:0000104

PMID:22301074	PMID:30032202

Capn9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	43,506,573 - 43,534,017 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936484	19,671,964 - 19,699,161 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936484	19,671,799 - 19,699,161 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CAPN9
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	230,747,388 - 230,801,989 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	230,747,384 - 230,802,003 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	230,883,134 - 230,937,735 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	228,949,753 - 229,004,372 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	227,189,864 - 227,244,253	NCBI
Celera	1	204,149,151 - 204,203,730 (+)	NCBI		Celera
Cytogenetic Map	1	q42.2	NCBI
HuRef	1	201,367,929 - 201,422,446 (+)	NCBI		HuRef
CHM1_1	1	232,156,149 - 232,210,762 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	230,127,941 - 230,182,452 (+)	NCBI		T2T-CHM13v2.0

Capn9
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	125,301,361 - 125,345,470 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	125,302,850 - 125,345,470 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	124,576,062 - 124,618,731 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	124,576,111 - 124,618,731 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	127,100,011 - 127,142,631 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	127,462,201 - 127,504,812 (+)	NCBI		MGSCv36	mm8
Celera	8	128,879,934 - 128,910,507 (+)	NCBI		Celera
Cytogenetic Map	8	E2	NCBI
cM Map	8	72.81	NCBI

Capn9
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	69,446,847 - 69,483,810 (+)	NCBI		GRCr8
mRatBN7.2	19	52,549,448 - 52,586,413 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	52,549,448 - 52,586,413 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	59,334,438 - 59,371,384 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	60,186,063 - 60,223,037 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	62,260,893 - 62,297,832 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	57,341,938 - 57,378,901 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	57,341,938 - 57,378,901 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	68,047,157 - 68,084,264 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	54,759,009 - 54,796,390 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	19	54,763,943 - 54,801,111 (+)	NCBI
Celera	19	51,919,286 - 51,955,889 (+)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

Capn9
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955492	7,809,188 - 7,845,090 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955492	7,809,188 - 7,845,090 (-)	NCBI	ChiLan1.0	ChiLan1.0

CAPN9
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	18,411,108 - 18,459,432 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	18,602,251 - 18,651,772 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	206,297,088 - 206,347,427 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	211,324,405 - 211,378,944 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	211,324,405 - 211,378,944 (+)	Ensembl	panpan1.1		panPan2

CAPN9
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	8,613,222 - 8,653,534 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	8,612,682 - 8,653,467 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	8,604,905 - 8,645,249 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	8,637,647 - 8,677,873 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	8,637,107 - 8,678,521 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	8,641,831 - 8,682,029 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	8,763,717 - 8,803,940 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	8,993,883 - 9,034,136 (-)	NCBI		UU_Cfam_GSD_1.0

CAPN9
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	59,582,046 - 59,623,376 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	59,581,999 - 59,623,553 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	64,246,812 - 64,288,645 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CAPN9
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	68,018,785 - 68,072,299 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	68,019,375 - 68,072,123 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	69,925,003 - 69,973,406 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Capn9
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624775	18,790,527 - 18,826,830 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624775	18,792,599 - 18,827,082 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_005320378	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005320379	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021723087	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040277866	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010004404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000003430 ⟹ ENSSTOP00000003071

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936484	19,671,964 - 19,699,161 (-)	Ensembl

RefSeq Acc Id:

XM_005320378 ⟹ XP_005320435

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	43,506,573 - 43,534,013 (-)	NCBI
SpeTri2.0	NW_004936484	19,671,799 - 19,699,161 (-)	NCBI

Sequence:

show sequence

ATGCCTTACCTGCATGGGGCCCCAGGGCCACAGGCCCATCCCGTCCCCCAGGATGCCCGGACCATTCACTCCTCAGGCCAGAGCTTTGAGCAGCTGAGGCAGGGCTCCCTGCAGACGGGCAGCCTATT
TGAGGACGTGGACTTCCCTGCCAACAACACCTCCCTGTTCTACAGCGAGAGGCCCCAGGTCCCCTTTGAGTGGAAACGGCCAGGGGAAATTGTGGAGAAGCCTGAATTCATCCTGGGAGGGGCCACTA
GGACTGACATCTGCCAGGGGGAGCTGGGGGACTGCTGGCTGCTGGCTGCCATCGCCTCCCTCACGCTCAATGAGAAGGCGCTGGCCAGAGTGGTTCCCCAGGACCAGAACTTTGGCCCTGGCTATGCC
GGGATATTCCACTTCCAGTTCTGGCAGCACAGTGAGTGGCTGGACGTGGTGATCGACGACCGCCTGCCCACCTTCCGTGGCCGCCTGGTCTTCCTCCACTCTGCCGACCACAGAGAGTTCTGGAGTGC
CCTGCTGGAGAAGGCCTACGCAAAGCTGAACGGGAGCTACGAGGCACTGAAGGGGGGCAGTACTCTGGAGGCCATGGAAGACTTCACCGGGGGTGTGGCGGAGACCTTCCTGACCAGAGAGGCCCCAC
AGGATTTCTACGCCATCCTGGGGAAGGCCCTGAAGCGTGGCTCCCTGCTCGGCTGCTCCATGGATATCAGAAATGCTGCAGAATCCGAAGCCCGGACACCTTTCGGTCTCATTAAAGGTCATGCCTAC
ACCATCACGGGGCTGGACCAGGTAGACTTCCGGGGCCAGAAAATCGAGCTCATCCGAGTCCGGAATCCCTGGGGCCAGGTCGAGTGGAACGGGCCGTGGAGTGACAGCTCCCCTGAGTGGCAGTCTGT
GGGCCTGGCTGACCAGAAGCGCCTGTGTCATGCTGCTCTGGACGACGGGGAGTTCTGGATGGCCTTCCAGGACTTCAGGGCCCACTTCGACAAGGTGGAGGTCTGCAACCTCAGCCCCGACGCGCTGC
AGGAGGATGCGCTGCACAGGTGGGAAGTGGCCGTGCACCAGGGCAGCTGGGTCCGAGGCTCTACTGCAGGGGGCTGCCGCAACTTTCTGGATACCTTTTGGACCAATCCACAGATAAAACTGTCCCTG
ACCGAGAAAGATGAGGGGCAGGAGGAATGTACTTTGCTCGTAGCCCTGATGCAGAAAGATCGAAGGAAGCTCAAGAGGTTTGGCGCTGACATGCTGACCATCGGCTACGCCATTTACCAGAGCCCCAG
CAAGGACGGACACTTGGACAAAGACTTCTTCAGGTACCATGCCTCCCTGGCTAGAAGCAAGACGTTCATCAACCTGAGGGAAGTCTCTGACCGCTTCCAGCTGCCCCCGGGGGAGTACATCCTGGTCC
CCAGCACCTTTGAGCCCCATCAGGAGGCTGACTTCTGTCTGAGAATCTTTTCGGAGAAGAAAGCCATTAGCCGGGACCTAGATGGCACTGTGGACATCGATCTTCCTGAGCCTTCACAGCCAAAGCCA
CCTGAGCAGGAGACAGAGGAGGAGCAACAATTCCGGGCCCTGTTCCAAAGAATCGCCGGCGAGGACATGGAGGTGACCGCAGAGGAACTGGAGTATGTCTTAAATGCTGTGCTGCAGAAGAGGAAAGA
CCTCAAGTTCAAGAAGCTGAGCCTGATCTCCTGCAGAAACATCATTTCCTTGATGGATACCAGCGGCAACGGGAAACTGGAGTTCAGTGAATTTCGAGTGTTCTGGGACAGGCTGAAGCAGTGGATCA
ACCTGTTCATTCAGTTTGATGTGGACAAGTCTGGCACCATGTCGTCCTATGAGCTGCGGACTGCACTGAGAGCTGCAGGCTTCCAGCTCAGCAGCCGCCTCCTGCAGCTCATCGTCCTCAGGTACGCC
GATGAGGGGCTTCAGCTGGACCTGGACGACTTCCTCAACTGCCTGGTCCGGCTGGAGAATGCAAGCCGGGTTTTCCAGGCTCTCCGAATGAAGAACAAGGACTTCATCCACCTCAACATAAATGAGTT
CATCAACTTGACAATGAACATTTGAGGCTGCCCTGGTGGGAGGCACCTGTCCAGCTGTTGGCTTTCGGACAGTGAACTACAGCGCTGCTCCTGGTGGATGGTCTCGCCCGGGGCTCTCTCCTGCCCTT
GTCCCCTGCCCACCCTCTCACCCTCCCACCTGAGAGAATGAAATCTCTGCTGTTCTTTCGGA

hide sequence

RefSeq Acc Id:

XM_040277866 ⟹ XP_040133800

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	43,506,573 - 43,534,017 (-)	NCBI


Protein RefSeqs	XP_005320435	(Get FASTA)	NCBI Sequence Viewer
	XP_040133800	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000003071.2
GenBank Protein	KAG3257873	(Get FASTA)	NCBI Sequence Viewer
	KAG3257874	(Get FASTA)	NCBI Sequence Viewer
	KAG3257875	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005320435 ⟸ XM_005320378
- Peptide Label:	isoform X1
- UniProtKB:	I3M2A0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPYLHGAPGPQAHPVPQDARTIHSSGQSFEQLRQGSLQTGSLFEDVDFPANNTSLFYSERPQVPFEWKRPGEIVEKPEFILGGATRTDICQGELGDCWLLAAIASLTLNEKALARVVPQDQNFGPGYA GIFHFQFWQHSEWLDVVIDDRLPTFRGRLVFLHSADHREFWSALLEKAYAKLNGSYEALKGGSTLEAMEDFTGGVAETFLTREAPQDFYAILGKALKRGSLLGCSMDIRNAAESEARTPFGLIKGHAY TITGLDQVDFRGQKIELIRVRNPWGQVEWNGPWSDSSPEWQSVGLADQKRLCHAALDDGEFWMAFQDFRAHFDKVEVCNLSPDALQEDALHRWEVAVHQGSWVRGSTAGGCRNFLDTFWTNPQIKLSL TEKDEGQEECTLLVALMQKDRRKLKRFGADMLTIGYAIYQSPSKDGHLDKDFFRYHASLARSKTFINLREVSDRFQLPPGEYILVPSTFEPHQEADFCLRIFSEKKAISRDLDGTVDIDLPEPSQPKP PEQETEEEQQFRALFQRIAGEDMEVTAEELEYVLNAVLQKRKDLKFKKLSLISCRNIISLMDTSGNGKLEFSEFRVFWDRLKQWINLFIQFDVDKSGTMSSYELRTALRAAGFQLSSRLLQLIVLRYA DEGLQLDLDDFLNCLVRLENASRVFQALRMKNKDFIHLNINEFINLTMNI hide sequence

RefSeq Acc Id:	XP_040133800 ⟸ XM_040277866
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSSTOP00000003071 ⟸ ENSSTOT00000003430

Protein Domains

Calpain catalytic EF-hand

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000003422	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000003430.3	UniProtKB/TrEMBL
Gene3D-CATH	2.60.120.380	UniProtKB/TrEMBL
	Cysteine proteinases	UniProtKB/TrEMBL
	EF-hand	UniProtKB/TrEMBL
InterPro	C2_III	UniProtKB/TrEMBL
	Calpain_cysteine_protease	UniProtKB/TrEMBL
	Calpain_domain_III	UniProtKB/TrEMBL
	Calpain_III	UniProtKB/TrEMBL
	Calpain_III_sf	UniProtKB/TrEMBL
	EF-hand-dom_pair	UniProtKB/TrEMBL
	EF_Hand_1_Ca_BS	UniProtKB/TrEMBL
	EF_hand_dom	UniProtKB/TrEMBL
	Papain-like_cys_pep_sf	UniProtKB/TrEMBL
	Pept_cys_AS	UniProtKB/TrEMBL
	Peptidase_C2_calpain_cat	UniProtKB/TrEMBL
NCBI Gene	Capn9	ENTREZGENE
PANTHER	CALPAIN	UniProtKB/TrEMBL
	PTHR10183:SF385	UniProtKB/TrEMBL
Pfam	Calpain_III	UniProtKB/TrEMBL
	Peptidase_C2	UniProtKB/TrEMBL
PRINTS	CALPAIN	UniProtKB/TrEMBL
PROSITE	CALPAIN_CAT	UniProtKB/TrEMBL
	EF_HAND_1	UniProtKB/TrEMBL
	EF_HAND_2	UniProtKB/TrEMBL
	THIOL_PROTEASE_CYS	UniProtKB/TrEMBL
SMART	calpain_III	UniProtKB/TrEMBL
	CysPc	UniProtKB/TrEMBL
	EFh	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47473	UniProtKB/TrEMBL
	SSF49758	UniProtKB/TrEMBL
	SSF54001	UniProtKB/TrEMBL
UniProt	I3M2A0	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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Imported Disease Annotations - ClinVar