Ppp3r2 (protein phosphatase 3 regulatory subunit B, beta) - Rat Genome Database

Send us a Message



Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Grant Resources Citing RGD About Us Contact Us
Search by Genomic Position Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quantitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Ppp3r2 (protein phosphatase 3 regulatory subunit B, beta) Ictidomys tridecemlineatus
Analyze
Symbol: Ppp3r2
Name: protein phosphatase 3 regulatory subunit B, beta
RGD ID: 12552915
Description: ENCODES a protein that exhibits calcium-dependent protein serine/threonine phosphatase regulator activity (ortholog); INVOLVED IN penetration of zona pellucida (ortholog); PARTICIPATES IN calcineurin signaling pathway; ASSOCIATED WITH traumatic brain injury (ortholog); FOUND IN calcineurin complex (ortholog); sperm flagellum (ortholog); sperm midpiece (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: calcineurin subunit B type 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mIctTri1.hap1 - mIctTri1.hap1 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap14180,539,552 - 180,542,676 (-)NCBImIctTri1.hap1
HiC_Itri_2NW_024404947173,194,963 - 173,196,041 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365249,742,788 - 9,743,327 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0



Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Ppp3r2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap14180,539,552 - 180,542,676 (-)NCBImIctTri1.hap1
HiC_Itri_2NW_024404947173,194,963 - 173,196,041 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365249,742,788 - 9,743,327 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPP3R2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389101,591,604 - 101,594,969 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9101,591,604 - 101,595,021 (-)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh379104,353,886 - 104,357,251 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369103,393,718 - 103,397,104 (-)NCBIBuild 36Build 36hg18NCBI36
Build 349101,433,453 - 101,436,838NCBI
Celera974,868,152 - 74,871,538 (-)NCBICelera
Cytogenetic Map9q31.1NCBI
HuRef973,954,645 - 73,958,031 (-)NCBIHuRef
CHM1_19104,500,302 - 104,503,688 (-)NCBICHM1_1
T2T-CHM13v2.09113,766,356 - 113,769,721 (-)NCBIT2T-CHM13v2.0
Ppp3r2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39449,678,747 - 49,681,983 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl449,678,747 - 49,682,385 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38449,678,747 - 49,681,983 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl449,678,747 - 49,682,024 (-)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv37449,691,619 - 49,694,855 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36449,699,847 - 49,703,083 (-)NCBIMGSCv36mm8
Celera449,707,048 - 49,710,284 (-)NCBICelera
Cytogenetic Map4B1NCBI
cM Map426.75NCBI
Ppp3r2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8568,822,387 - 68,823,382 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl568,822,387 - 68,823,818 (-)EnsemblGRCr8
mRatBN7.2564,026,903 - 64,027,898 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl564,026,903 - 64,032,548 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx565,960,061 - 65,961,056 (-)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0567,779,403 - 67,780,398 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0567,748,770 - 67,749,765 (-)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd568,968,432 - 68,969,427 (-)NCBI
Lyon_Normotensive570,540,680 - 70,541,675 (-)NCBI
Lyon_Hypertensive569,858,935 - 69,859,930 (-)NCBI
F344_StmMcwi563,685,409 - 63,686,404 (-)NCBI
Rnor_6.0564,945,583 - 64,946,578 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl564,945,583 - 64,946,580 (-)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.0569,437,021 - 69,438,016 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4566,423,374 - 66,424,369 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera563,581,125 - 63,582,120 (+)NCBICelera
RGSC_v3.1566,428,486 - 66,429,482 (-)NCBI
Cytogenetic Map5q22NCBI
Ppp3r2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541924,252,884 - 24,253,692 (+)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_00495541924,252,772 - 24,253,730 (+)NCBIChiLan1.0ChiLan1.0
PPP3R2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21137,766,051 - 37,775,517 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1937,768,423 - 37,775,533 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0972,796,099 - 72,799,499 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19100,789,939 - 100,793,366 (-)NCBIPanPan1.1PanPan1.1panPan2
PPP3R2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11158,295,237 - 58,295,942 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1156,739,743 - 56,740,445 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01159,430,834 - 59,431,536 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.11157,940,585 - 57,941,287 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01157,953,530 - 57,954,232 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01158,651,272 - 58,651,974 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
PPP3R2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap11271,526,256 - 71,529,612 (-)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_0236660354,714,461 - 4,717,519 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.11237,838,156 - 37,841,477 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Ppp3r2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247589,737,002 - 9,737,978 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
HetGla_female_1.0 EnsemblNW_0046247589,736,936 - 9,739,266 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
Ppp3r2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1757,213,577 - 57,214,867 (+)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_005326339   ⟹   XP_005326396
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
mIctTri1.hap14180,539,552 - 180,542,676 (-)NCBI
HiC_Itri_2NW_024404947173,194,963 - 173,196,041 (-)NCBI
SpeTri2.0NW_0049365249,742,788 - 9,743,327 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005326396 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3287627 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005326396   ⟸   XM_005326339
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Ppp3r2 ENTREZGENE