Fam171a1 (family with sequence similarity 171 member A1) - Rat Genome Database

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Gene: Fam171a1 (family with sequence similarity 171 member A1) Ictidomys tridecemlineatus
Analyze
Symbol: Fam171a1
Name: family with sequence similarity 171 member A1
RGD ID: 12552176
Description: INVOLVED IN regulation of cell shape (inferred); stress fiber assembly (inferred); ASSOCIATED WITH hypoparathyroidism-deafness-renal disease syndrome (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934416,244,247 - 16,322,908 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365745,743,722 - 5,799,197 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365745,742,637 - 5,795,351 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Fam171a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934416,244,247 - 16,322,908 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365745,743,722 - 5,799,197 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365745,742,637 - 5,795,351 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM171A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381015,211,643 - 15,374,554 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1015,211,643 - 15,371,289 (-)EnsemblGRCh38hg38GRCh38
GRCh371015,253,642 - 15,413,288 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361015,293,648 - 15,453,064 (-)NCBINCBI36Build 36hg18NCBI36
Celera1015,186,204 - 15,346,555 (-)NCBICelera
Cytogenetic Map10p13NCBI
HuRef1015,167,039 - 15,239,397 (-)NCBIHuRef
CHM1_11015,254,028 - 15,413,304 (-)NCBICHM1_1
T2T-CHM13v2.01015,229,953 - 15,392,762 (-)NCBIT2T-CHM13v2.0
Fam171a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3923,115,261 - 3,228,843 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl23,115,261 - 3,228,843 (+)EnsemblGRCm39 Ensembl
GRCm3823,114,224 - 3,227,806 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl23,114,224 - 3,227,806 (+)EnsemblGRCm38mm10GRCm38
MGSCv3723,035,660 - 3,145,081 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3623,035,660 - 3,145,081 (+)NCBIMGSCv36mm8
Celera23,123,896 - 3,179,837 (+)NCBICelera
Cytogenetic Map2A1NCBI
cM Map21.73NCBI
Fam171a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81779,933,742 - 80,057,495 (-)NCBIGRCr8
mRatBN7.21775,024,582 - 75,148,348 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1775,024,575 - 75,150,255 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01779,030,150 - 79,149,480 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1779,031,423 - 79,085,076 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01780,668,493 - 80,784,735 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41786,143,621 - 86,266,740 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1774,403,866 - 74,528,732 (-)NCBICelera
Cytogenetic Map17q12.3NCBI
Fam171a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542919,114,953 - 19,241,987 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542919,184,886 - 19,241,987 (+)NCBIChiLan1.0ChiLan1.0
FAM171A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2828,058,056 - 28,221,781 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11028,063,383 - 28,227,107 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01015,533,814 - 15,696,362 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11015,814,643 - 15,886,708 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1015,814,643 - 15,977,675 (-)Ensemblpanpan1.1panPan2
FAM171A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1221,445,602 - 21,505,564 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl221,445,726 - 21,504,249 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha218,487,184 - 18,618,094 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0221,675,022 - 21,806,071 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl221,674,938 - 21,806,841 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1218,875,069 - 19,006,314 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0219,710,023 - 19,841,376 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0220,336,878 - 20,468,123 (+)NCBIUU_Cfam_GSD_1.0
FAM171A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1046,449,781 - 46,601,087 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11046,449,781 - 46,601,093 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21051,148,307 - 51,299,703 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FAM171A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1915,193,535 - 15,252,631 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl915,193,471 - 15,252,288 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605120,756,519 - 20,902,761 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam171a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624805203,496 - 346,101 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624805203,234 - 344,205 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000011319   ⟹   ENSSTOP00000010156
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365745,745,006 - 5,799,197 (-)Ensembl
Ensembl Acc Id: ENSSTOT00000042228   ⟹   ENSSTOP00000025191
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365745,743,722 - 5,795,351 (-)Ensembl
RefSeq Acc Id: XM_040277854   ⟹   XP_040133788
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934416,244,247 - 16,322,908 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040133788 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000010156.3
  ENSSTOP00000025191.1
GenBank Protein KAG3257547 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040133788   ⟸   XM_040277854
- UniProtKB: A0A287CV89 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000010156   ⟸   ENSSTOT00000011319
Ensembl Acc Id: ENSSTOP00000025191   ⟸   ENSSTOT00000042228
Protein Domains
FAM171 C-terminal   FAM171 N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000011322 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000011319.3 UniProtKB/TrEMBL
  ENSSTOT00000042228.1 UniProtKB/TrEMBL
InterPro FAM171_C UniProtKB/TrEMBL
  FAM171_N UniProtKB/TrEMBL
  Uncharacterised_FAM171 UniProtKB/TrEMBL
NCBI Gene Fam171a1 ENTREZGENE
PANTHER PROTEIN FAM171A1 UniProtKB/TrEMBL
  PTHR31626 UniProtKB/TrEMBL
Pfam FAM171A1-2-B_C UniProtKB/TrEMBL
  UPF0560 UniProtKB/TrEMBL
UniProt A0A287CV89 ENTREZGENE, UniProtKB/TrEMBL
  I3MH35_ICTTR UniProtKB/TrEMBL