FAM171A1 (family with sequence similarity 171 member A1) - Rat Genome Database

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Gene: FAM171A1 (family with sequence similarity 171 member A1) Chlorocebus sabaeus
Analyze
Symbol: FAM171A1
Name: family with sequence similarity 171 member A1
RGD ID: 18653664
Description: INVOLVED IN regulation of cell shape (inferred); stress fiber assembly (inferred); ASSOCIATED WITH genetic disease (ortholog); hypoparathyroidism-deafness-renal disease syndrome (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein FAM171A1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1915,193,535 - 15,252,631 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl915,193,471 - 15,252,288 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605120,756,519 - 20,902,761 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
FAM171A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1915,193,535 - 15,252,631 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl915,193,471 - 15,252,288 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605120,756,519 - 20,902,761 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
FAM171A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381015,211,643 - 15,374,554 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1015,211,643 - 15,371,289 (-)EnsemblGRCh38hg38GRCh38
GRCh371015,253,642 - 15,413,288 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361015,293,648 - 15,453,064 (-)NCBINCBI36Build 36hg18NCBI36
Celera1015,186,204 - 15,346,555 (-)NCBICelera
Cytogenetic Map10p13NCBI
HuRef1015,167,039 - 15,239,397 (-)NCBIHuRef
CHM1_11015,254,028 - 15,413,304 (-)NCBICHM1_1
T2T-CHM13v2.01015,229,953 - 15,392,762 (-)NCBIT2T-CHM13v2.0
Fam171a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3923,115,261 - 3,228,843 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl23,115,261 - 3,228,843 (+)EnsemblGRCm39 Ensembl
GRCm3823,114,224 - 3,227,806 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl23,114,224 - 3,227,806 (+)EnsemblGRCm38mm10GRCm38
MGSCv3723,035,660 - 3,145,081 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3623,035,660 - 3,145,081 (+)NCBIMGSCv36mm8
Celera23,123,896 - 3,179,837 (+)NCBICelera
Cytogenetic Map2A1NCBI
cM Map21.73NCBI
Fam171a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81779,933,742 - 80,057,495 (-)NCBIGRCr8
mRatBN7.21775,024,582 - 75,148,348 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1775,024,575 - 75,150,255 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01779,030,150 - 79,149,480 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1779,031,423 - 79,085,076 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01780,668,493 - 80,784,735 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41786,143,621 - 86,266,740 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1774,403,866 - 74,528,732 (-)NCBICelera
Cytogenetic Map17q12.3NCBI
Fam171a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542919,114,953 - 19,241,987 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542919,184,886 - 19,241,987 (+)NCBIChiLan1.0ChiLan1.0
FAM171A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2828,058,056 - 28,221,781 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11028,063,383 - 28,227,107 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01015,533,814 - 15,696,362 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11015,814,643 - 15,886,708 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1015,814,643 - 15,977,675 (-)Ensemblpanpan1.1panPan2
FAM171A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1221,445,602 - 21,505,564 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl221,445,726 - 21,504,249 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha218,487,184 - 18,618,094 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0221,675,022 - 21,806,071 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl221,674,938 - 21,806,841 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1218,875,069 - 19,006,314 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0219,710,023 - 19,841,376 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0220,336,878 - 20,468,123 (+)NCBIUU_Cfam_GSD_1.0
Fam171a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934416,244,247 - 16,322,908 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365745,743,722 - 5,799,197 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365745,742,637 - 5,795,351 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM171A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1046,449,781 - 46,601,087 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11046,449,781 - 46,601,093 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21051,148,307 - 51,299,703 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Fam171a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624805203,496 - 346,101 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624805203,234 - 344,205 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 60
Low 16
Below cutoff 4

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000010963   ⟹   ENSCSAP00000009048
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl915,193,471 - 15,252,288 (-)Ensembl
RefSeq Acc Id: XM_037983359   ⟹   XP_037839287
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605120,756,519 - 20,902,761 (-)NCBI
RefSeq Acc Id: XM_037983360   ⟹   XP_037839288
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605120,756,519 - 20,902,760 (-)NCBI
Protein Sequences
Protein RefSeqs XP_037839287 (Get FASTA)   NCBI Sequence Viewer  
  XP_037839288 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000009048.1
Reference Protein Sequences
RefSeq Acc Id: ENSCSAP00000009048   ⟸   ENSCSAT00000010963
RefSeq Acc Id: XP_037839287   ⟸   XM_037983359
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RKA9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037839288   ⟸   XM_037983360
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RKA9 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000012873 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000010963.1 UniProtKB/TrEMBL
InterPro FAM171_C UniProtKB/TrEMBL
  FAM171_N UniProtKB/TrEMBL
  Uncharacterised_FAM171 UniProtKB/TrEMBL
KEGG Report csab:103237938 UniProtKB/TrEMBL
NCBI Gene FAM171A1 ENTREZGENE
PANTHER PROTEIN FAM171A1 UniProtKB/TrEMBL
  PTHR31626 UniProtKB/TrEMBL
Pfam FAM171A1-2-B_C UniProtKB/TrEMBL
  UPF0560 UniProtKB/TrEMBL
UniProt A0A0D9RKA9 ENTREZGENE, UniProtKB/TrEMBL