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Gene: Plbd2 (phospholipase B domain containing 2) Ictidomys tridecemlineatus

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Symbol:

Plbd2

Name:

phospholipase B domain containing 2

RGD ID:

12549472

Description:

ENCODES a protein that exhibits hydrolase activity (inferred); phospholipase activity (inferred); INVOLVED IN lipid catabolic process (inferred); lipid metabolic process (inferred); phospholipid catabolic process (inferred); FOUND IN extracellular region (inferred); lysosome (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

putative phospholipase B-like 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	148,691,220 - 148,709,303 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936668	3,190,064 - 3,211,059 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936668	3,190,107 - 3,208,192 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Plbd2	Squirrel	lipid catabolic process	involved_in	IEA	UniProtKB-KW:KW-0442	150520179		UniProt	GO_REF:0000043
Plbd2	Squirrel	lipid metabolic process	involved_in	IEA	UniProtKB-KW:KW-0443	150520179		UniProt	GO_REF:0000043
Plbd2	Squirrel	phospholipid catabolic process	involved_in	IEA	PANTHER:PTN000271490	150520179		TreeGrafter	GO_REF:0000118

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Plbd2	Squirrel	extracellular region	located_in	IEA	PANTHER:PTN000271490	150520179		TreeGrafter	GO_REF:0000118
Plbd2	Squirrel	lysosome	located_in	IEA	UniProtKB:Q3TCN2\|ensembl:ENSMUSP00000031597	150520179		Ensembl	GO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Plbd2	Squirrel	hydrolase activity	enables	IEA	UniProtKB-KW:KW-0378	150520179		UniProt	GO_REF:0000043
Plbd2	Squirrel	phospholipase activity	enables	IEA	PANTHER:PTN000271490	150520179		TreeGrafter	GO_REF:0000118
Plbd2	Squirrel	phospholipase activity	enables	IEA	InterPro:IPR007000	150520179		InterPro	GO_REF:0000002
Plbd2	Squirrel	protein binding	enables	ISO	UniProtKB:Q9NY72	9068941	PMID:32296183	IntAct	PMID:32296183

PMID:22301074	PMID:30032202

Plbd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	148,691,220 - 148,709,303 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936668	3,190,064 - 3,211,059 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936668	3,190,107 - 3,208,192 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PLBD2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	113,358,587 - 113,391,629 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	113,358,566 - 113,391,629 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	113,796,392 - 113,829,434 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	112,280,761 - 112,311,584 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	12	113,423,600 - 113,454,718 (+)	NCBI		Celera
Cytogenetic Map	12	q24.13	NCBI
HuRef	12	110,807,788 - 110,838,876 (+)	NCBI		HuRef
CHM1_1	12	113,764,578 - 113,795,669 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	113,335,210 - 113,368,256 (+)	NCBI		T2T-CHM13v2.0

Plbd2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	120,621,958 - 120,641,688 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	120,621,347 - 120,641,690 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	120,483,893 - 120,503,623 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	120,483,282 - 120,503,625 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	120,933,902 - 120,953,632 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	120,743,899 - 120,764,235 (-)	NCBI		MGSCv36	mm8
Celera	5	117,568,232 - 117,587,975 (-)	NCBI		Celera
Cytogenetic Map	5	F	NCBI
cM Map	5	60.63	NCBI

Plbd2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	41,723,372 - 41,742,554 (+)	NCBI		GRCr8
mRatBN7.2	12	36,062,802 - 36,081,984 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	36,062,802 - 36,081,983 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	37,241,999 - 37,261,163 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	37,853,217 - 37,872,382 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	36,905,685 - 36,924,851 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	41,600,005 - 41,619,779 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	41,600,005 - 41,619,186 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	43,452,899 - 43,472,081 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	37,260,666 - 37,279,849 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	37,140,024 - 37,143,221 (+)	NCBI
Celera	12	37,722,877 - 37,742,047 (+)	NCBI		Celera
Cytogenetic Map	12	q16	NCBI

Plbd2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955482	9,630,187 - 9,643,431 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955482	9,630,300 - 9,643,212 (+)	NCBI	ChiLan1.0	ChiLan1.0

PLBD2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	121,445,568 - 121,476,214 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	121,441,948 - 121,474,830 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	110,961,537 - 110,994,336 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	114,344,527 - 114,374,726 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	114,344,527 - 114,374,726 (+)	Ensembl	panpan1.1		panPan2

PLBD2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	10,692,083 - 10,723,704 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	10,699,258 - 10,723,452 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	10,821,897 - 10,846,246 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	10,943,937 - 10,968,280 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	10,943,893 - 10,967,597 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	10,917,866 - 10,942,213 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	10,980,521 - 11,004,870 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	11,029,659 - 11,054,010 (+)	NCBI		UU_Cfam_GSD_1.0

PLBD2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	38,515,847 - 38,543,561 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	38,515,835 - 38,543,581 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	40,832,766 - 40,854,244 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Plbd2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	19,134,195 - 19,153,817 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624747	19,132,743 - 19,153,665 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_005336839	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000007484 ⟹ ENSSTOP00000006687

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936668	3,190,064 - 3,211,059 (+)	Ensembl

RefSeq Acc Id:

XM_005336839 ⟹ XP_005336896

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	148,691,220 - 148,709,303 (+)	NCBI
SpeTri2.0	NW_004936668	3,190,107 - 3,208,192 (+)	NCBI

Sequence:

show sequence

CGTGATCCAGGCTGCGGCGCGGGGCTCCGCGCGGTCATGGTGGCCCCGATGTACGGGTCCCCCGGCGGCCGCCTGGCCCGGGCGCTGACGCGGGCCCTGGCGCTGGCCCTGGTGCTGGCTTTGCTGGT
CGGGCTGTTCCTGAGCGGCCTGACGGGCGCGATCCCGGCCCCGGGGGACCGCTGGAAGCACCATAGACCGGCACCACCCGCCTCCCGCAGCCGCTCGGTGCTTCTGGACTCCGCGTCGGGCCAGCTGC
GCCTGGTGGACGGTCGCCACCCCGAGGCCGTGGCCTGGGCCAACCTCACCAACGCCATCCACGAGACCGGGTGGGCCTTCCTGGAGCTGGGCACAAGTGGCAGCTACAATGACAGCCTGCAGGCCTAT
GCGGCCGGCGTGGTGGAGGCCTCCGTGTCCGAGGAGCTCATCTACATGCACTGGATGAACACCGTGGTCAACTACTGCGGCCCCTTTGAGTACGAGGTCGGCTACTGCGAGAAGCTCAAGCACTTCCT
GGAGGCCAATCTCGAGTGGATGCAGCGGGAGATGCAGTGGGACCAGGACTCCGGGTACTGGCACCAGGTGCGGCTGACCTTGCTGCAGCTGAAGGGCCTGGAGGACAGCTATGAAGGCCGCGTGTCCT
TCCCAACTGGGAAGTTCACCATCAAGCCCCTGGGGTTCCTCCTGTTGCAGATCTCTGGGGACCTGGAAGATCTAGAGCCCGCCCTGAACAAGACCAGGACCAGGGCCGTCCTTGGCTCAGGGTCCTGC
TCTGCCCTCATCAAGCTGCTGCCCGGCCAGCGTGACCTCCTGGTAGCCCACAACACCTGGAACTCCTACCAGCACATGCTACGCATCATCAAGAAGTACACGTTCCAGTTCCGGGAGGGCCCCCAGGA
GGACGCCCTCCTGGTTCCTGGGAATCAGATGGTCTTCTCATCCTACCCCGGCACTATCTTCTCCTGTGACGACTTCTACATCCTGGGCAGCCAGCTGGTGGCGCTGGAGACCACCATCGGCAACAGGA
ACGCAGCCCTGTGGAAGTATGTGCAGCCCGAGGGCTGCGTGCTGGAGTGGATCCGCAACCTGGTGGCCAACCGCCTGGCCCTGGACGGAGCCATCTGGACAGACGTCTTCAAGAGGTTCAACAGTGGC
ACGTACAACAACCAGTGGATGATCGTGGACTACAAGGCCTTTGTCCCCGGACAGACCAGCCCAGGGGGCAGGGTGCTCACGGTCCTGGAGCAGCTCCCGGGCCTGGTGGTGGTGGCTGACAAGACCTC
GGACCTCTACGAAATGACCTACTGGGCCAGCTACAACATCCCGGCCTTTGAGACAGTGTTCAATGCCAGCGGGCTGCAGGCGCTGGTGGCCCAGTACGGGAACTGGTTTTCCTATGACAAGAACCCCC
GCGCCCAGATCTTCCAGCGGAACCAGTCCCTGGTGAGGGACATGGACTCCATGATCCGGCTGATGAGGTACAACAACTTCCTGCACGACCCCCTCTCGCTGTGTGAGGCCTGCAGCCCCCAGCCCAAC
GGGGAGAACGCCATCTCCGCCCGCTCCGACCTCAACCCCGCCAACGGCTCCTACCCATTCCAGGCCCTGCACCAGCGCTTGCACGGGGGCATCGACGTGAAGGTGACCAACATGTCCCTGGTGAAGGT
GCTGGGCCTGCTGGCCGCCAGCGGGCCCACGTGGGACCAGGTGCCGCCCTTCCAGTGGAGCACCTCACCCTTCAGTGACAAGCTGCACATGGGCCACCCTGACCTCTGGAAGTTCCCGCCCCTGAAGG
TCTCCTGGGGCTGAGCCCGTCGCCTGCTGCCCCTGTCCTGCTGGCCCATAGGCACCCGCTGCCCCCGACCTGCCACATCCCTGCCACTATGCCCCACTGCCCCCAAGCTGGGCTGGGGCTGTCTGGGT
CACTCCTGTCCTGGGGTCTCTTTCAAGGGCTGAGCACAGACCCGAGGGACTCAGAAAGACTCAGGGTCCCCACAAAGTGGGTGGCAGCCCCTGTGCCATCTCCTTTCTGCAGCTCCCTCCCTTCCTCC
CGCTTCTGTCTCTGCCACCTCGGGGACTGTCCTTGTGCTCTGTCCACCTGAAGCTGAGGGAGAGTCCTGGGCTGCGGCCCTAGACCTCTACTGGGCCGGGAAGCCTGTTCCAGCCCAGCCTCCAGCCT
CCTGCCTCCTGAGCGGCCTGGGGCTGGTGAGGGGCAGCCCTGGGGTCTAGGCACATCTCTGGCTGGTGTCGCTGCCCCAGGCCACAGCCCCTGCCTCCCACCCCTCGCCTGCTCCCTGGACAGCTTCC
TCAAAGATAGAAACTTGAAACAAAACCAAAGTTTCTGGCCACTGGCGGCTGGAGGGTCTCGAGTGCCCTCTGTCCCCATGCAGGTGGGAGTGTGGCCCCGCGCTCCTGCCTGGTGTCCACCCCTCTCG
GGCCAGGGGAGGCGGACTGCAGGCTGTGCCGCCATTAAACTAGAGAGGCGGTGGCTGCTGTGCCGCTTGGGTCGCAGGCGGCACCTCCCTCCCTGGCCTGGGCCCTGCAGCGTCCACCGTGCAGCCTG
CTCATCCTCCATCTGTCCGTCCAGTCACTCACATGCCAGCCCACCTGCCCCTGTCCTTCCTCACGGCCATCCCTTTGTCCCTCCCTCCTGTGCAGCCATCAGAAAGGACCTGTTGTCACCCCCACAGT
GGGTGGTGCCACCTCTGTCCCCCTCTGCTTCTCTGCATCTGCTTCCCTCTCTGTCCATCCGTGCCTCCTTGGGGACTCCGTCTATCCCATGCCCTGTCCCCCCTGAAGGCCTCCACCTTGCACCTCTA
GCCGTCTGTCCACGTGTCCAGCCGTCCCAGGCGCCTTAGGAGCACCTGCTGTGTGCGGGTCCTTCCTGAGCCCTGCTGTGGGGCACAGACCAGTGCGGACAGCTCTCCCATCTGACCTCGTGTGGCCC
GCCTGTGACAAGACTCCTGTGTTCCCCGCCCGGGGACGGACAGGGACAGCGTGCAGCCCCAGAGTTTCACCCCTGGGTTCGTCCTGGGCCCACTATGCTGGCTGTAGACTCCCCTCTGAGCCCCGGCC
ACCTCGTCTGTAAAGCAGGCAGTGACGTGTCCCTGGACTGTGACCAGGGTCCCTGCACGGGCCCTCGCACTTCACATTACCAACCCCTGCTGACCCTCAGCACCACGGGAGGCCCCGGCACCTTAAAG
GGGAAGGTCCACAAGGCTCCCCGCTCCGTGAAGCTCGCCCCCAGGATGGAGACACAGCCGCTCGGGGAGAATAAAGCGCAGTGAGGCTGATCCGCCTTCTAA

hide sequence


Protein RefSeqs	XP_005336896	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000006687.2

RefSeq Acc Id:

XP_005336896 ⟸ XM_005336839

- UniProtKB:

I3M9U0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MVAPMYGSPGGRLARALTRALALALVLALLVGLFLSGLTGAIPAPGDRWKHHRPAPPASRSRSVLLDSASGQLRLVDGRHPEAVAWANLTNAIHETGWAFLELGTSGSYNDSLQAYAAGVVEASVSEE
LIYMHWMNTVVNYCGPFEYEVGYCEKLKHFLEANLEWMQREMQWDQDSGYWHQVRLTLLQLKGLEDSYEGRVSFPTGKFTIKPLGFLLLQISGDLEDLEPALNKTRTRAVLGSGSCSALIKLLPGQRD
LLVAHNTWNSYQHMLRIIKKYTFQFREGPQEDALLVPGNQMVFSSYPGTIFSCDDFYILGSQLVALETTIGNRNAALWKYVQPEGCVLEWIRNLVANRLALDGAIWTDVFKRFNSGTYNNQWMIVDYK
AFVPGQTSPGGRVLTVLEQLPGLVVVADKTSDLYEMTYWASYNIPAFETVFNASGLQALVAQYGNWFSYDKNPRAQIFQRNQSLVRDMDSMIRLMRYNNFLHDPLSLCEACSPQPNGENAISARSDLN
PANGSYPFQALHQRLHGGIDVKVTNMSLVKVLGLLAASGPTWDQVPPFQWSTSPFSDKLHMGHPDLWKFPPLKVSWG

hide sequence

Ensembl Acc Id:

ENSSTOP00000006687 ⟸ ENSSTOT00000007484

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000007472	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000007484.3	UniProtKB/TrEMBL
Gene3D-CATH	1.10.439.20	UniProtKB/TrEMBL
	2.10.70.60	UniProtKB/TrEMBL
	3.60.60.20	UniProtKB/TrEMBL
InterPro	PLipase_B-like	UniProtKB/TrEMBL
	PLipase_B-like_dom1	UniProtKB/TrEMBL
	PLipase_B-like_dom2	UniProtKB/TrEMBL
	PLipase_B-like_dom3	UniProtKB/TrEMBL
NCBI Gene	Plbd2	ENTREZGENE
PANTHER	PHOSPHOLIPASE B-LIKE 2-RELATED	UniProtKB/TrEMBL
	PTHR12370	UniProtKB/TrEMBL
Pfam	Phospholip_B	UniProtKB/TrEMBL
UniProt	I3M9U0	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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