Nsmf (NMDA receptor synaptonuclear signaling and neuronal migration factor) - Rat Genome Database

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Gene: Nsmf (NMDA receptor synaptonuclear signaling and neuronal migration factor) Ictidomys tridecemlineatus
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Symbol: Nsmf
Name: NMDA receptor synaptonuclear signaling and neuronal migration factor
RGD ID: 12535085
Description: ENCODES a protein that exhibits calcium-dependent protein binding (ortholog); INVOLVED IN cellular response to amino acid stimulus (ortholog); cellular response to electrical stimulus (ortholog); postsynapse to nucleus signaling pathway (ortholog); ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); Animal Mammary Neoplasms (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); FOUND IN apical dendrite (ortholog); cortical cytoskeleton (ortholog); dendrite (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: NMDA receptor synaptonuclear signaling and neuronal migration factor, transcript variant X1; NMDA receptor synaptonuclear signaling and neuronal migration factor, transcript variant X2; NMDA receptor synaptonuclear signaling and neuronal migration factor, transcript variant X3; NMDA receptor synaptonuclear signaling and neuronal migration factor, transcript variant X4; NMDA receptor synaptonuclear signaling and neuronal migration factor, transcript variant X5; NMDA receptor synaptonuclear signaling and neuronal migration factor, transcript variant X6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947202,760,312 - 202,768,558 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936669606,299 - 615,834 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936669606,392 - 614,748 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Nsmf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947202,760,312 - 202,768,558 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936669606,299 - 615,834 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936669606,392 - 614,748 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NSMF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389137,447,570 - 137,459,334 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9137,447,570 - 137,459,334 (-)EnsemblGRCh38hg38GRCh38
GRCh379140,342,022 - 140,353,786 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369139,462,498 - 139,473,575 (-)NCBINCBI36Build 36hg18NCBI36
Build 349137,618,513 - 137,629,591NCBI
Celera9110,868,305 - 110,878,574 (-)NCBICelera
Cytogenetic Map9q34.3NCBI
HuRef9109,806,039 - 109,817,921 (-)NCBIHuRef
CHM1_19140,490,446 - 140,501,310 (-)NCBICHM1_1
T2T-CHM13v2.09149,698,122 - 149,709,468 (-)NCBIT2T-CHM13v2.0
Nsmf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39224,944,370 - 24,952,893 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl224,944,367 - 24,952,893 (+)EnsemblGRCm39 Ensembl
GRCm38225,054,361 - 25,062,881 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl225,054,355 - 25,062,881 (+)EnsemblGRCm38mm10GRCm38
MGSCv37224,909,899 - 24,918,401 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36224,876,388 - 24,884,890 (+)NCBIMGSCv36mm8
Celera224,781,465 - 24,789,967 (+)NCBICelera
Cytogenetic Map2A3NCBI
cM Map216.94NCBI
Nsmf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8328,260,018 - 28,268,790 (+)NCBIGRCr8
mRatBN7.237,861,846 - 7,870,615 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl37,861,872 - 7,870,614 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx310,967,020 - 10,975,923 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0319,553,247 - 19,562,150 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0317,743,097 - 17,752,000 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.032,262,173 - 2,270,996 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl32,262,253 - 2,270,995 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.032,243,484 - 2,252,244 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.435,201,581 - 5,210,256 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.135,201,580 - 5,210,256 (+)NCBI
Celera32,691,097 - 2,699,840 (+)NCBICelera
Cytogenetic Map3p13NCBI
Nsmf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555135,369,218 - 5,375,670 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555135,368,384 - 5,376,480 (-)NCBIChiLan1.0ChiLan1.0
NSMF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2111,928,740 - 1,941,379 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan191,931,082 - 1,943,712 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09108,518,698 - 108,531,316 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19137,482,420 - 137,495,951 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9137,482,420 - 137,495,990 (-)Ensemblpanpan1.1panPan2
NSMF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1948,287,019 - 48,295,540 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl948,287,014 - 48,294,780 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha947,474,255 - 47,482,693 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0949,149,164 - 49,157,603 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl949,149,158 - 49,157,601 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1947,925,534 - 47,933,972 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0948,224,513 - 48,232,948 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0948,271,008 - 48,279,446 (+)NCBIUU_Cfam_GSD_1.0
NSMF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.21313,980,663 - 313,982,378 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NSMF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112734,863 - 744,214 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl12735,127 - 744,659 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660584,603,362 - 4,612,920 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nsmf
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624760574,920 - 583,410 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624760575,805 - 583,410 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000028643   ⟹   ENSSTOP00000020268
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936669606,591 - 613,659 (+)Ensembl
Ensembl Acc Id: ENSSTOT00000031815   ⟹   ENSSTOP00000030426
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936669606,591 - 612,427 (+)Ensembl
Ensembl Acc Id: ENSSTOT00000033439   ⟹   ENSSTOP00000024625
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936669606,591 - 613,659 (+)Ensembl
Ensembl Acc Id: ENSSTOT00000034708   ⟹   ENSSTOP00000027624
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936669606,591 - 613,659 (+)Ensembl
Ensembl Acc Id: ENSSTOT00000035764   ⟹   ENSSTOP00000026190
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936669606,299 - 615,834 (+)Ensembl
Ensembl Acc Id: ENSSTOT00000040715   ⟹   ENSSTOP00000024853
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936669606,371 - 614,742 (+)Ensembl
RefSeq Acc Id: XM_005336865   ⟹   XP_005336922
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947202,760,312 - 202,768,557 (-)NCBI
SpeTri2.0NW_004936669606,392 - 614,748 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005336866   ⟹   XP_005336923
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947202,760,312 - 202,768,557 (-)NCBI
SpeTri2.0NW_004936669606,392 - 614,748 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005336870   ⟹   XP_005336927
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947202,760,312 - 202,768,558 (-)NCBI
SpeTri2.0NW_004936669606,392 - 614,748 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005336871   ⟹   XP_005336928
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947202,760,312 - 202,768,558 (-)NCBI
SpeTri2.0NW_004936669606,392 - 614,748 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021734308   ⟹   XP_021589983
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947202,760,312 - 202,768,557 (-)NCBI
SpeTri2.0NW_004936669606,393 - 614,748 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021734309   ⟹   XP_021589984
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947202,760,312 - 202,768,558 (-)NCBI
SpeTri2.0NW_004936669606,392 - 614,748 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040286712   ⟹   XP_040142646
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947202,760,312 - 202,768,557 (-)NCBI
RefSeq Acc Id: XM_040286713   ⟹   XP_040142647
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947202,760,312 - 202,768,558 (-)NCBI
RefSeq Acc Id: XM_040286714   ⟹   XP_040142648
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947202,760,312 - 202,768,557 (-)NCBI
RefSeq Acc Id: XM_040286715   ⟹   XP_040142649
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947202,760,312 - 202,768,557 (-)NCBI
RefSeq Acc Id: XM_040286716   ⟹   XP_040142650
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947202,760,312 - 202,768,557 (-)NCBI
RefSeq Acc Id: XM_040286717   ⟹   XP_040142651
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947202,760,312 - 202,768,557 (-)NCBI
RefSeq Acc Id: XP_005336922   ⟸   XM_005336865
- Peptide Label: isoform X1
- UniProtKB: I3N7C2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005336923   ⟸   XM_005336866
- Peptide Label: isoform X2
- UniProtKB: A0A287CXY0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005336928   ⟸   XM_005336871
- Peptide Label: isoform X6
- UniProtKB: A0A287CUA7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005336927   ⟸   XM_005336870
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_021589984   ⟸   XM_021734309
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_021589983   ⟸   XM_021734308
- Peptide Label: isoform X3
- UniProtKB: A0A287D260 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040142647   ⟸   XM_040286713
- Peptide Label: isoform X8
RefSeq Acc Id: XP_040142651   ⟸   XM_040286717
- Peptide Label: isoform X12
RefSeq Acc Id: XP_040142649   ⟸   XM_040286715
- Peptide Label: isoform X10
RefSeq Acc Id: XP_040142650   ⟸   XM_040286716
- Peptide Label: isoform X11
RefSeq Acc Id: XP_040142648   ⟸   XM_040286714
- Peptide Label: isoform X9
RefSeq Acc Id: XP_040142646   ⟸   XM_040286712
- Peptide Label: isoform X4
- UniProtKB: A0A287CTG9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000030426   ⟸   ENSSTOT00000031815
Ensembl Acc Id: ENSSTOP00000024853   ⟸   ENSSTOT00000040715
Ensembl Acc Id: ENSSTOP00000027624   ⟸   ENSSTOT00000034708
Ensembl Acc Id: ENSSTOP00000020268   ⟸   ENSSTOT00000028643
Ensembl Acc Id: ENSSTOP00000026190   ⟸   ENSSTOT00000035764
Ensembl Acc Id: ENSSTOP00000024625   ⟸   ENSSTOT00000033439


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000027021 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000028643.2 UniProtKB/TrEMBL
  ENSSTOT00000031815.1 UniProtKB/TrEMBL
  ENSSTOT00000033439.1 UniProtKB/TrEMBL
  ENSSTOT00000034708.1 UniProtKB/TrEMBL
  ENSSTOT00000035764.1 UniProtKB/TrEMBL
  ENSSTOT00000040715.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.190 UniProtKB/TrEMBL
  iswi atpase UniProtKB/TrEMBL
InterPro IQ_motif_EF-hand-BS UniProtKB/TrEMBL
  NSMF UniProtKB/TrEMBL
NCBI Gene Nsmf ENTREZGENE
PANTHER NMDA RECEPTOR SYNAPTONUCLEAR SIGNALING AND NEURONAL MIGRATION FACTOR UniProtKB/TrEMBL
  PTHR32061 UniProtKB/TrEMBL
Pfam PF00612 UniProtKB/TrEMBL
PROSITE PS50096 UniProtKB/TrEMBL
UniProt A0A287CTG9 ENTREZGENE, UniProtKB/TrEMBL
  A0A287CUA7 ENTREZGENE, UniProtKB/TrEMBL
  A0A287CXY0 ENTREZGENE, UniProtKB/TrEMBL
  A0A287D260 ENTREZGENE, UniProtKB/TrEMBL
  A0A287DAA3_ICTTR UniProtKB/TrEMBL
  I3N7C2 ENTREZGENE, UniProtKB/TrEMBL