Nsmf (NMDA receptor synaptonuclear signaling and neuronal migration factor) - Rat Genome Database

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Gene: Nsmf (NMDA receptor synaptonuclear signaling and neuronal migration factor) Mus musculus
Analyze
Symbol: Nsmf
Name: NMDA receptor synaptonuclear signaling and neuronal migration factor
RGD ID: 733598
MGI Page MGI
Description: Predicted to enable calcium-dependent protein binding activity. Involved in cellular response to gonadotropin stimulus. Located in cytoplasm and nucleus. Is expressed in several structures, including central nervous system; dorsal root ganglion; liver; lung; and sensory organ. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 7 with or without anosmia and hypogonadotropic hypogonadism 9 with or without anosmia. Orthologous to human NSMF (NMDA receptor synaptonuclear signaling and neuronal migration factor).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Jac; Jacob; juxtasynaptic attractor of caldendrin on dendritic boutons protein; nasal embryonic LHRH factor; nasal embryonic luteinizing hormone-releasing hormone factor; Ne; Nelf
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39224,944,370 - 24,952,893 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl224,944,367 - 24,952,893 (+)EnsemblGRCm39 Ensembl
GRCm38225,054,361 - 25,062,881 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl225,054,355 - 25,062,881 (+)EnsemblGRCm38mm10GRCm38
MGSCv37224,909,899 - 24,918,401 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36224,876,388 - 24,884,890 (+)NCBIMGSCv36mm8
Celera224,781,465 - 24,789,967 (+)NCBICelera
Cytogenetic Map2A3NCBI
cM Map216.94NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. Digenic mutations account for variable phenotypes in idiopathic hypogonadotropic hypogonadism. Pitteloud N, etal., J Clin Invest. 2007 Feb;117(2):457-63. Epub 2007 Jan 18.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10898796   PMID:11042159   PMID:11076861   PMID:11125038   PMID:11217851   PMID:12466851   PMID:12477932   PMID:15018815   PMID:15489334   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:16602821   PMID:18303947   PMID:19608740   PMID:20025934   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22103416   PMID:22347158   PMID:23452857  
PMID:23589332   PMID:24316376   PMID:24317321   PMID:24656816   PMID:25731822   PMID:26977770   PMID:30973865   PMID:30995482   PMID:32155413   PMID:33963872   PMID:34321999   PMID:34697434  
PMID:35444206   PMID:36774487   PMID:37516276  


Genomics

Comparative Map Data
Nsmf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39224,944,370 - 24,952,893 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl224,944,367 - 24,952,893 (+)EnsemblGRCm39 Ensembl
GRCm38225,054,361 - 25,062,881 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl225,054,355 - 25,062,881 (+)EnsemblGRCm38mm10GRCm38
MGSCv37224,909,899 - 24,918,401 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36224,876,388 - 24,884,890 (+)NCBIMGSCv36mm8
Celera224,781,465 - 24,789,967 (+)NCBICelera
Cytogenetic Map2A3NCBI
cM Map216.94NCBI
NSMF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389137,447,570 - 137,459,334 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9137,447,570 - 137,459,334 (-)EnsemblGRCh38hg38GRCh38
GRCh379140,342,022 - 140,353,786 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369139,462,498 - 139,473,575 (-)NCBINCBI36Build 36hg18NCBI36
Build 349137,618,513 - 137,629,591NCBI
Celera9110,868,305 - 110,878,574 (-)NCBICelera
Cytogenetic Map9q34.3NCBI
HuRef9109,806,039 - 109,817,921 (-)NCBIHuRef
CHM1_19140,490,446 - 140,501,310 (-)NCBICHM1_1
T2T-CHM13v2.09149,698,122 - 149,709,468 (-)NCBIT2T-CHM13v2.0
Nsmf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8328,260,018 - 28,268,790 (+)NCBIGRCr8
mRatBN7.237,861,846 - 7,870,615 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl37,861,872 - 7,870,614 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx310,967,020 - 10,975,923 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0319,553,247 - 19,562,150 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0317,743,097 - 17,752,000 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.032,262,173 - 2,270,996 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl32,262,253 - 2,270,995 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.032,243,484 - 2,252,244 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.435,201,581 - 5,210,256 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.135,201,580 - 5,210,256 (+)NCBI
Celera32,691,097 - 2,699,840 (+)NCBICelera
Cytogenetic Map3p13NCBI
Nsmf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555135,369,218 - 5,375,670 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555135,368,384 - 5,376,480 (-)NCBIChiLan1.0ChiLan1.0
NSMF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2111,928,740 - 1,941,379 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan191,931,082 - 1,943,712 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09108,518,698 - 108,531,316 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19137,482,420 - 137,495,951 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9137,482,420 - 137,495,990 (-)Ensemblpanpan1.1panPan2
NSMF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1948,287,019 - 48,295,540 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl948,287,014 - 48,294,780 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha947,474,255 - 47,482,693 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0949,149,164 - 49,157,603 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl949,149,158 - 49,157,601 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1947,925,534 - 47,933,972 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0948,224,513 - 48,232,948 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0948,271,008 - 48,279,446 (+)NCBIUU_Cfam_GSD_1.0
Nsmf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947202,760,312 - 202,768,558 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936669606,299 - 615,834 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936669606,392 - 614,748 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NSMF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.21313,980,663 - 313,982,378 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NSMF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112734,863 - 744,214 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl12735,127 - 744,659 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660584,603,362 - 4,612,920 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nsmf
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624760574,920 - 583,410 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624760575,805 - 583,410 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nsmf
287 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:5829
Count of miRNA genes:728
Interacting mature miRNAs:968
Transcripts:ENSMUST00000006646, ENSMUST00000074422, ENSMUST00000100334, ENSMUST00000102931, ENSMUST00000114386, ENSMUST00000114388, ENSMUST00000116574, ENSMUST00000124309, ENSMUST00000132172, ENSMUST00000134744, ENSMUST00000135328, ENSMUST00000140733, ENSMUST00000140737, ENSMUST00000141866, ENSMUST00000144520, ENSMUST00000152122, ENSMUST00000152506, ENSMUST00000155909
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12903993Opfaq1_mopen field activity QTL 1 (mouse)2967669127022642Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
1301838Sluc16_msusceptibility to lung cancer 16 (mouse)Not determined2126529589Mouse
1301790Pcfm1_mperiosteal circumference and femur length 1 (mouse)Not determined2823629642236396Mouse
10043876Adip22_madiposity 22 (mouse)Not determined2830805142308240Mouse
13463470Tubisq1_mtubulointerstitial injury severity, QTL 1 (mouse)22368914557689269Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1301980Fcsa5_mfemoral cross-sectional area 5 (mouse)Not determined2767911541679261Mouse
1301376Etohc1_methanol consumption 1 (mouse)Not determined22112972555129871Mouse
1301641Sbmd2_mspinal bone mineral density 2 (mouse)Not determined21421456748214713Mouse
8552706Cia24_mcollagen induced arthritis QTL 24 (mouse)Not determined22467911533523172Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1300624Insq7_minsulin QTL 7 (mouse)Not determined2938444643384575Mouse
12904743Carcdq3_mcardiac collagen deposition QTL 3 (mouse)2323494028179150Mouse
8552705Cia25_mcollagen induced arthritis 25 (mouse)Not determined22467911533523172Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
26884438Sklq12_mskull length QTL 12, 16 week (mouse)22459001254890012Mouse
4142333Tgq10_mtriglyceride QTL 10 (mouse)Not determined125324559Mouse
10755513Amzn4_manatomical modifier of Zfp423 4 (mouse)2938444643384575Mouse
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212953766556453Mouse
4141836Tgq11_mtriglyceride QTL 11 (mouse)Not determined125324559Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
4141708Pbwg1.2_mpostnatal body weight growth 1.2 (mouse)Not determined2112972555129871Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse

Markers in Region
UniSTS:224232  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38225,059,486 - 25,059,644UniSTSGRCm38
MGSCv37224,915,006 - 24,915,164UniSTSGRCm37
Celera224,786,572 - 24,786,730UniSTS
Cytogenetic Map2A3UniSTS
UniSTS:224573  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38225,062,686 - 25,062,841UniSTSGRCm38
MGSCv37224,918,206 - 24,918,361UniSTSGRCm37
Celera224,789,772 - 24,789,927UniSTS
Cytogenetic Map2A3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001039386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001039387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001177654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001177655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001421788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001421790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001421791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001421793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001421796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001421798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001421800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001421802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001421803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_020276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_185326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006498201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006498202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006498203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030251903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030251905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF266508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI850576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ278902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK019560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL732585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY259140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY262985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY269983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000006646   ⟹   ENSMUSP00000006646
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl224,944,396 - 24,952,893 (+)Ensembl
GRCm38.p6 Ensembl225,054,384 - 25,062,881 (+)Ensembl
RefSeq Acc Id: ENSMUST00000074422   ⟹   ENSMUSP00000074022
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl224,944,425 - 24,952,893 (+)Ensembl
GRCm38.p6 Ensembl225,054,413 - 25,062,881 (+)Ensembl
RefSeq Acc Id: ENSMUST00000100334   ⟹   ENSMUSP00000097908
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl224,944,367 - 24,952,893 (+)Ensembl
GRCm38.p6 Ensembl225,054,355 - 25,062,881 (+)Ensembl
RefSeq Acc Id: ENSMUST00000102931   ⟹   ENSMUSP00000099995
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl224,944,425 - 24,952,893 (+)Ensembl
GRCm38.p6 Ensembl225,054,413 - 25,062,881 (+)Ensembl
RefSeq Acc Id: ENSMUST00000114386   ⟹   ENSMUSP00000110028
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl224,944,480 - 24,952,893 (+)Ensembl
GRCm38.p6 Ensembl225,054,468 - 25,062,881 (+)Ensembl
RefSeq Acc Id: ENSMUST00000114388   ⟹   ENSMUSP00000110030
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl224,944,447 - 24,952,893 (+)Ensembl
GRCm38.p6 Ensembl225,054,435 - 25,062,881 (+)Ensembl
RefSeq Acc Id: ENSMUST00000116574   ⟹   ENSMUSP00000112273
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl224,944,391 - 24,952,892 (+)Ensembl
GRCm38.p6 Ensembl225,054,379 - 25,062,880 (+)Ensembl
RefSeq Acc Id: ENSMUST00000124309
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl224,950,841 - 24,951,721 (+)Ensembl
GRCm38.p6 Ensembl225,060,829 - 25,061,709 (+)Ensembl
RefSeq Acc Id: ENSMUST00000132172   ⟹   ENSMUSP00000116106
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl224,944,437 - 24,949,068 (+)Ensembl
GRCm38.p6 Ensembl225,054,425 - 25,059,056 (+)Ensembl
RefSeq Acc Id: ENSMUST00000134744   ⟹   ENSMUSP00000120376
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl224,947,159 - 24,952,893 (+)Ensembl
GRCm38.p6 Ensembl225,057,147 - 25,062,881 (+)Ensembl
RefSeq Acc Id: ENSMUST00000135328
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl224,945,892 - 24,947,359 (+)Ensembl
GRCm38.p6 Ensembl225,055,880 - 25,057,347 (+)Ensembl
RefSeq Acc Id: ENSMUST00000140733
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl224,947,588 - 24,949,671 (+)Ensembl
GRCm38.p6 Ensembl225,057,576 - 25,059,659 (+)Ensembl
RefSeq Acc Id: ENSMUST00000140737   ⟹   ENSMUSP00000141410
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl224,944,468 - 24,952,893 (+)Ensembl
GRCm38.p6 Ensembl225,054,456 - 25,062,881 (+)Ensembl
RefSeq Acc Id: ENSMUST00000141866
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl224,944,415 - 24,946,887 (+)Ensembl
GRCm38.p6 Ensembl225,054,403 - 25,056,875 (+)Ensembl
RefSeq Acc Id: ENSMUST00000144520   ⟹   ENSMUSP00000141583
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl224,944,480 - 24,952,640 (+)Ensembl
GRCm38.p6 Ensembl225,054,468 - 25,062,628 (+)Ensembl
RefSeq Acc Id: ENSMUST00000152122   ⟹   ENSMUSP00000121580
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl224,944,385 - 24,950,574 (+)Ensembl
GRCm38.p6 Ensembl225,054,373 - 25,060,562 (+)Ensembl
RefSeq Acc Id: ENSMUST00000152506
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl224,950,148 - 24,951,119 (+)Ensembl
GRCm38.p6 Ensembl225,060,136 - 25,061,107 (+)Ensembl
RefSeq Acc Id: ENSMUST00000155909
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl224,944,419 - 24,945,108 (+)Ensembl
GRCm38.p6 Ensembl225,054,407 - 25,055,096 (+)Ensembl
RefSeq Acc Id: NM_001039386   ⟹   NP_001034475
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39224,944,418 - 24,952,893 (+)NCBI
GRCm38225,054,379 - 25,062,881 (+)NCBI
MGSCv37224,909,899 - 24,918,401 (+)RGD
Celera224,781,465 - 24,789,967 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001039387   ⟹   NP_001034476
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39224,944,418 - 24,952,893 (+)NCBI
GRCm38225,054,379 - 25,062,881 (+)NCBI
MGSCv37224,909,899 - 24,918,401 (+)RGD
Celera224,781,465 - 24,789,967 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001177654   ⟹   NP_001171125
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39224,944,418 - 24,952,893 (+)NCBI
GRCm38225,054,379 - 25,062,881 (+)NCBI
MGSCv37224,909,899 - 24,918,401 (+)RGD
Celera224,781,465 - 24,789,967 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001177655   ⟹   NP_001171126
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39224,944,418 - 24,952,893 (+)NCBI
GRCm38225,054,379 - 25,062,881 (+)NCBI
MGSCv37224,909,899 - 24,918,401 (+)RGD
Celera224,781,465 - 24,789,967 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001421788   ⟹   NP_001408717
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39224,944,418 - 24,952,893 (+)NCBI
RefSeq Acc Id: NM_001421790   ⟹   NP_001408719
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39224,944,418 - 24,952,893 (+)NCBI
RefSeq Acc Id: NM_001421791   ⟹   NP_001408720
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39224,944,418 - 24,952,893 (+)NCBI
RefSeq Acc Id: NM_001421793   ⟹   NP_001408722
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39224,944,418 - 24,952,893 (+)NCBI
RefSeq Acc Id: NM_001421796   ⟹   NP_001408725
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39224,944,418 - 24,952,893 (+)NCBI
RefSeq Acc Id: NM_001421798   ⟹   NP_001408727
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39224,944,418 - 24,952,893 (+)NCBI
RefSeq Acc Id: NM_001421800   ⟹   NP_001408729
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39224,944,418 - 24,952,893 (+)NCBI
RefSeq Acc Id: NM_001421802   ⟹   NP_001408731
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39224,944,418 - 24,952,893 (+)NCBI
RefSeq Acc Id: NM_001421803   ⟹   NP_001408732
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39224,944,418 - 24,946,902 (+)NCBI
RefSeq Acc Id: NM_020276   ⟹   NP_064672
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39224,944,418 - 24,952,893 (+)NCBI
GRCm38225,054,379 - 25,062,881 (+)NCBI
MGSCv37224,909,899 - 24,918,401 (+)RGD
Celera224,781,465 - 24,789,967 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_185326
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39224,944,418 - 24,952,893 (+)NCBI
RefSeq Acc Id: XM_006498201   ⟹   XP_006498264
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39224,944,370 - 24,952,893 (+)NCBI
GRCm38225,054,361 - 25,062,881 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006498202   ⟹   XP_006498265
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39224,944,370 - 24,952,893 (+)NCBI
GRCm38225,054,361 - 25,062,881 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006498203   ⟹   XP_006498266
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39224,944,370 - 24,952,893 (+)NCBI
GRCm38225,054,361 - 25,062,881 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030251903   ⟹   XP_030107763
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39224,944,370 - 24,952,893 (+)NCBI
GRCm38225,054,371 - 25,062,881 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030251905   ⟹   XP_030107765
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39224,944,370 - 24,952,893 (+)NCBI
GRCm38225,054,372 - 25,062,881 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001034475 (Get FASTA)   NCBI Sequence Viewer  
  NP_001034476 (Get FASTA)   NCBI Sequence Viewer  
  NP_001171125 (Get FASTA)   NCBI Sequence Viewer  
  NP_001171126 (Get FASTA)   NCBI Sequence Viewer  
  NP_001408717 (Get FASTA)   NCBI Sequence Viewer  
  NP_001408719 (Get FASTA)   NCBI Sequence Viewer  
  NP_001408720 (Get FASTA)   NCBI Sequence Viewer  
  NP_001408722 (Get FASTA)   NCBI Sequence Viewer  
  NP_001408725 (Get FASTA)   NCBI Sequence Viewer  
  NP_001408727 (Get FASTA)   NCBI Sequence Viewer  
  NP_001408729 (Get FASTA)   NCBI Sequence Viewer  
  NP_001408731 (Get FASTA)   NCBI Sequence Viewer  
  NP_001408732 (Get FASTA)   NCBI Sequence Viewer  
  NP_064672 (Get FASTA)   NCBI Sequence Viewer  
  XP_006498264 (Get FASTA)   NCBI Sequence Viewer  
  XP_006498265 (Get FASTA)   NCBI Sequence Viewer  
  XP_006498266 (Get FASTA)   NCBI Sequence Viewer  
  XP_030107763 (Get FASTA)   NCBI Sequence Viewer  
  XP_030107765 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF74501 (Get FASTA)   NCBI Sequence Viewer  
  AAH06642 (Get FASTA)   NCBI Sequence Viewer  
  BAB23721 (Get FASTA)   NCBI Sequence Viewer  
  BAC25597 (Get FASTA)   NCBI Sequence Viewer  
  BAC30955 (Get FASTA)   NCBI Sequence Viewer  
  BAC35375 (Get FASTA)   NCBI Sequence Viewer  
  BAE34673 (Get FASTA)   NCBI Sequence Viewer  
  BAE38127 (Get FASTA)   NCBI Sequence Viewer  
  CAC27332 (Get FASTA)   NCBI Sequence Viewer  
  EDL08193 (Get FASTA)   NCBI Sequence Viewer  
  EDL08194 (Get FASTA)   NCBI Sequence Viewer  
  EDL08195 (Get FASTA)   NCBI Sequence Viewer  
  EDL08196 (Get FASTA)   NCBI Sequence Viewer  
  EDL08197 (Get FASTA)   NCBI Sequence Viewer  
  EDL08198 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000006646
  ENSMUSP00000006646.9
  ENSMUSP00000074022.8
  ENSMUSP00000097908
  ENSMUSP00000097908.5
  ENSMUSP00000099995
  ENSMUSP00000099995.5
  ENSMUSP00000110028
  ENSMUSP00000110028.2
  ENSMUSP00000110030
  ENSMUSP00000110030.2
  ENSMUSP00000112273.4
  ENSMUSP00000116106.2
  ENSMUSP00000120376.2
  ENSMUSP00000121580.2
  ENSMUSP00000141410.2
  ENSMUSP00000141583.2
GenBank Protein Q99NF2 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001034475   ⟸   NM_001039386
- Peptide Label: isoform A
- UniProtKB: Q9DBF4 (UniProtKB/Swiss-Prot),   Q8C9R5 (UniProtKB/Swiss-Prot),   Q8BPT0 (UniProtKB/Swiss-Prot),   A2AJ94 (UniProtKB/Swiss-Prot),   A2AJ93 (UniProtKB/Swiss-Prot),   Q9ERZ1 (UniProtKB/Swiss-Prot),   Q99NF2 (UniProtKB/Swiss-Prot),   F6TKU5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_064672   ⟸   NM_020276
- Peptide Label: isoform C
- UniProtKB: F6TKU5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001034476   ⟸   NM_001039387
- Peptide Label: isoform B
- UniProtKB: F6TKU5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001171125   ⟸   NM_001177654
- Peptide Label: isoform D
- UniProtKB: Q3TNG2 (UniProtKB/TrEMBL),   F6TKU5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001171126   ⟸   NM_001177655
- Peptide Label: isoform E
- UniProtKB: A2AJ96 (UniProtKB/TrEMBL),   F6TKU5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006498264   ⟸   XM_006498201
- Peptide Label: isoform X2
- UniProtKB: F6TKU5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006498265   ⟸   XM_006498202
- Peptide Label: isoform X3
- UniProtKB: A2AJ95 (UniProtKB/TrEMBL),   F6TKU5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006498266   ⟸   XM_006498203
- Peptide Label: isoform X4
- UniProtKB: F6TKU5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030107763   ⟸   XM_030251903
- Peptide Label: isoform X5
RefSeq Acc Id: XP_030107765   ⟸   XM_030251905
- Peptide Label: isoform X7
RefSeq Acc Id: ENSMUSP00000141583   ⟸   ENSMUST00000144520
RefSeq Acc Id: ENSMUSP00000006646   ⟸   ENSMUST00000006646
RefSeq Acc Id: ENSMUSP00000074022   ⟸   ENSMUST00000074422
RefSeq Acc Id: ENSMUSP00000121580   ⟸   ENSMUST00000152122
RefSeq Acc Id: ENSMUSP00000116106   ⟸   ENSMUST00000132172
RefSeq Acc Id: ENSMUSP00000141410   ⟸   ENSMUST00000140737
RefSeq Acc Id: ENSMUSP00000097908   ⟸   ENSMUST00000100334
RefSeq Acc Id: ENSMUSP00000120376   ⟸   ENSMUST00000134744
RefSeq Acc Id: ENSMUSP00000110030   ⟸   ENSMUST00000114388
RefSeq Acc Id: ENSMUSP00000110028   ⟸   ENSMUST00000114386
RefSeq Acc Id: ENSMUSP00000099995   ⟸   ENSMUST00000102931
RefSeq Acc Id: ENSMUSP00000112273   ⟸   ENSMUST00000116574
RefSeq Acc Id: NP_001408720   ⟸   NM_001421791
- Peptide Label: isoform H
- UniProtKB: F6TKU5 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001408717   ⟸   NM_001421788
- Peptide Label: isoform F
- UniProtKB: F6TKU5 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001408719   ⟸   NM_001421790
- Peptide Label: isoform G
- UniProtKB: F6TKU5 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001408722   ⟸   NM_001421793
- Peptide Label: isoform I
- UniProtKB: A2AJ92 (UniProtKB/TrEMBL),   F6TKU5 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001408725   ⟸   NM_001421796
- Peptide Label: isoform J
- UniProtKB: F6TKU5 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001408729   ⟸   NM_001421800
- Peptide Label: isoform L
RefSeq Acc Id: NP_001408731   ⟸   NM_001421802
- Peptide Label: isoform M
RefSeq Acc Id: NP_001408727   ⟸   NM_001421798
- Peptide Label: isoform K
- UniProtKB: Q3TY90 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001408732   ⟸   NM_001421803
- Peptide Label: isoform N

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q99NF2-F1-model_v2 AlphaFold Q99NF2 1-532 view protein structure

Promoters
RGD ID:6831911
Promoter ID:MM_KWN:28087
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000114381,   ENSMUST00000114386,   ENSMUST00000116574,   NM_001039387,   NM_020276,   OTTMUST00000027151,   OTTMUST00000027152,   OTTMUST00000027153,   OTTMUST00000027201,   OTTMUST00000027202,   OTTMUST00000027203,   OTTMUST00000027204,   UC008IQA.1,   UC008IQD.1,   UC008IQE.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36224,909,734 - 24,910,234 (+)MPROMDB
RGD ID:6831912
Promoter ID:MM_KWN:28088
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour
Transcripts:OTTMUST00000027205
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36224,910,686 - 24,911,487 (+)MPROMDB
RGD ID:6831913
Promoter ID:MM_KWN:28089
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:OTTMUST00000027159,   OTTMUST00000027206
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36224,913,581 - 24,914,081 (+)MPROMDB
RGD ID:6831914
Promoter ID:MM_KWN:28090
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Liver,   Lung
Transcripts:OTTMUST00000027622,   OTTMUST00000027623
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36224,914,661 - 24,916,262 (+)MPROMDB
RGD ID:6876536
Promoter ID:EPDNEW_M1719
Type:initiation region
Name:Nsmf_1
Description:Mus musculus NMDA receptor synaptonuclear signaling and neuronalmigration factor , transcript variant 5, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M1720  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38225,054,406 - 25,054,466EPDNEW
RGD ID:6876538
Promoter ID:EPDNEW_M1720
Type:initiation region
Name:Nsmf_2
Description:Mus musculus NMDA receptor synaptonuclear signaling and neuronalmigration factor , transcript variant 5, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M1719  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38225,054,520 - 25,054,580EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1861755 AgrOrtholog
Ensembl Genes ENSMUSG00000006476 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000006646 ENTREZGENE
  ENSMUST00000006646.15 UniProtKB/Swiss-Prot
  ENSMUST00000074422.14 UniProtKB/TrEMBL
  ENSMUST00000100334 ENTREZGENE
  ENSMUST00000100334.11 UniProtKB/Swiss-Prot
  ENSMUST00000102931 ENTREZGENE
  ENSMUST00000102931.11 UniProtKB/Swiss-Prot
  ENSMUST00000114386 ENTREZGENE
  ENSMUST00000114386.8 UniProtKB/TrEMBL
  ENSMUST00000114388 ENTREZGENE
  ENSMUST00000114388.8 UniProtKB/TrEMBL
  ENSMUST00000116574.10 UniProtKB/TrEMBL
  ENSMUST00000132172.8 UniProtKB/TrEMBL
  ENSMUST00000134744.3 UniProtKB/TrEMBL
  ENSMUST00000140737.8 UniProtKB/TrEMBL
  ENSMUST00000144520.8 UniProtKB/TrEMBL
  ENSMUST00000152122.8 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.190 UniProtKB/TrEMBL
  iswi atpase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro IQ_motif_EF-hand-BS UniProtKB/TrEMBL
  NSMF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:56876 UniProtKB/Swiss-Prot
MGD MGI:1861755 ENTREZGENE
NCBI Gene 56876 ENTREZGENE
PANTHER NMDA RECEPTOR SYNAPTONUCLEAR SIGNALING AND NEURONAL MIGRATION FACTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR32061 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PF00612 UniProtKB/TrEMBL
PhenoGen Nsmf PhenoGen
PROSITE PS50096 UniProtKB/TrEMBL
UniProt A0A0A6YW62_MOUSE UniProtKB/TrEMBL
  A0A0A6YWK2_MOUSE UniProtKB/TrEMBL
  A2AJ90_MOUSE UniProtKB/TrEMBL
  A2AJ91_MOUSE UniProtKB/TrEMBL
  A2AJ92 ENTREZGENE, UniProtKB/TrEMBL
  A2AJ93 ENTREZGENE
  A2AJ94 ENTREZGENE
  A2AJ95 ENTREZGENE, UniProtKB/TrEMBL
  A2AJ96 ENTREZGENE, UniProtKB/TrEMBL
  F6TKU5 ENTREZGENE, UniProtKB/TrEMBL
  F6VTS9_MOUSE UniProtKB/TrEMBL
  NSMF_MOUSE UniProtKB/Swiss-Prot
  Q3TNG2 ENTREZGENE, UniProtKB/TrEMBL
  Q3TY90 ENTREZGENE, UniProtKB/TrEMBL
  Q8BPT0 ENTREZGENE
  Q8C9R5 ENTREZGENE
  Q99NF2 ENTREZGENE
  Q9DBF4 ENTREZGENE
  Q9ERZ1 ENTREZGENE
UniProt Secondary A2AJ93 UniProtKB/Swiss-Prot
  A2AJ94 UniProtKB/Swiss-Prot
  Q8BPT0 UniProtKB/Swiss-Prot
  Q8C9R5 UniProtKB/Swiss-Prot
  Q9DBF4 UniProtKB/Swiss-Prot
  Q9ERZ1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-01-22 Nsmf  NMDA receptor synaptonuclear signaling and neuronal migration factor  Nelf  nasal embryonic LHRH factor  Symbol and/or name change 5135510 APPROVED