Btn1a1 (butyrophilin subfamily 1 member A1) - Rat Genome Database

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Gene: Btn1a1 (butyrophilin subfamily 1 member A1) Ictidomys tridecemlineatus
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Symbol: Btn1a1
Name: butyrophilin subfamily 1 member A1
RGD ID: 12526626
Description: ENCODES a protein that exhibits signaling receptor binding (inferred); INVOLVED IN regulation of cytokine production (inferred); T cell receptor signaling pathway (inferred); FOUND IN external side of plasma membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: butyrophilin subfamily 1 member A1-like; LOC101959464
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049461,403,569 - 1,436,841 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366712,209,410 - 2,217,982 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366712,209,521 - 2,217,981 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Btn1a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049461,403,569 - 1,436,841 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366712,209,410 - 2,217,982 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366712,209,521 - 2,217,981 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BTN1A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38626,500,303 - 26,510,425 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl626,500,303 - 26,510,425 (+)EnsemblGRCh38hg38GRCh38
GRCh37626,500,531 - 26,510,653 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36626,608,550 - 26,618,629 (+)NCBINCBI36Build 36hg18NCBI36
Build 34626,584,518 - 26,618,629NCBI
Celera627,730,812 - 27,739,977 (+)NCBICelera
Cytogenetic Map6p22.2NCBI
HuRef626,444,203 - 26,453,371 (+)NCBIHuRef
CHM1_1626,503,594 - 26,512,752 (+)NCBICHM1_1
T2T-CHM13v2.0626,368,710 - 26,378,831 (+)NCBIT2T-CHM13v2.0
Btn1a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391323,641,154 - 23,650,084 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1323,641,162 - 23,650,071 (-)EnsemblGRCm39 Ensembl
GRCm381323,456,984 - 23,465,914 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1323,456,992 - 23,465,901 (-)EnsemblGRCm38mm10GRCm38
MGSCv371323,548,861 - 23,557,770 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361323,464,471 - 23,473,374 (-)NCBIMGSCv36mm8
Celera1323,689,704 - 23,698,615 (-)NCBICelera
Cytogenetic Map13A3.1NCBI
cM Map139.72NCBI
Btn1a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81742,080,217 - 42,092,286 (+)NCBIGRCr8
mRatBN7.21741,653,499 - 41,664,246 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1741,654,249 - 41,664,272 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1741,734,973 - 41,742,726 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01743,339,034 - 43,346,787 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01741,613,472 - 41,621,229 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01743,899,155 - 43,909,042 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1743,900,450 - 43,909,627 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01745,755,210 - 45,765,018 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41748,856,129 - 48,863,883 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11748,858,965 - 48,866,724 (+)NCBI
Celera1741,285,047 - 41,292,801 (+)NCBICelera
Cytogenetic Map17p11NCBI
Btn1a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955483392,749 - 409,947 (-)NCBIChiLan1.0ChiLan1.0
BTN1A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2541,146,301 - 41,156,092 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1637,147,062 - 37,157,585 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0626,333,369 - 26,342,997 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1626,990,950 - 27,001,087 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl626,990,950 - 27,001,087 (+)Ensemblpanpan1.1panPan2
BTN1A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13524,282,445 - 24,290,261 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3524,282,590 - 24,289,167 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3524,139,250 - 24,150,265 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03524,465,808 - 24,476,825 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3524,465,881 - 24,472,586 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13524,246,903 - 24,257,628 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03524,298,542 - 24,309,603 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03525,763,416 - 25,774,439 (+)NCBIUU_Cfam_GSD_1.0
BTN1A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl720,977,442 - 20,985,070 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1720,977,940 - 20,985,300 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2722,299,271 - 22,307,236 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BTN1A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11745,704,449 - 45,714,311 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1745,705,703 - 45,713,944 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604426,435,817 - 26,445,335 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Btn1a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624756357,047 - 362,415 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624756356,124 - 362,425 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000004022   ⟹   ENSSTOP00000003606
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366712,209,410 - 2,217,982 (+)Ensembl
RefSeq Acc Id: XM_005337073   ⟹   XP_005337130
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049461,403,569 - 1,412,060 (-)NCBI
SpeTri2.0NW_0049366712,209,521 - 2,217,981 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040283640   ⟹   XP_040139574
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049461,403,569 - 1,436,841 (-)NCBI
RefSeq Acc Id: XM_040283641   ⟹   XP_040139575
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049461,403,569 - 1,436,841 (-)NCBI
RefSeq Acc Id: XM_040283642   ⟹   XP_040139576
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049461,403,569 - 1,436,840 (-)NCBI
RefSeq Acc Id: XM_040283643   ⟹   XP_040139577
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049461,403,569 - 1,412,054 (-)NCBI
RefSeq Acc Id: XP_005337130   ⟸   XM_005337073
- UniProtKB: I3M3F8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040139575   ⟸   XM_040283641
- UniProtKB: I3M3F8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040139574   ⟸   XM_040283640
- UniProtKB: I3M3F8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040139576   ⟸   XM_040283642
- UniProtKB: I3M3F8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040139577   ⟸   XM_040283643
- UniProtKB: I3M3F8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000003606   ⟸   ENSSTOT00000004022
Protein Domains
B30.2/SPRY   Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000004034 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000004022.3 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.920 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
InterPro B30.2/SPRY UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/TrEMBL
  BTN3A2-like_Ig-C UniProtKB/TrEMBL
  Butyrophylin_SPRY UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
  IgSF_BTN/MOG UniProtKB/TrEMBL
  PRY UniProtKB/TrEMBL
  SPRY/PRY_BTN1/2 UniProtKB/TrEMBL
  SPRY_dom UniProtKB/TrEMBL
NCBI Gene LOC101959464 ENTREZGENE
PANTHER BUTYROPHILIN UniProtKB/TrEMBL
  BUTYROPHILIN SUBFAMILY 1 MEMBER A1 UniProtKB/TrEMBL
Pfam C2-set_3 UniProtKB/TrEMBL
  PRY UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
  V-set UniProtKB/TrEMBL
PRINTS BUTYPHLNCDUF UniProtKB/TrEMBL
PROSITE B302_SPRY UniProtKB/TrEMBL
  IG_LIKE UniProtKB/TrEMBL
SMART IGv UniProtKB/TrEMBL
  PRY UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF49899 UniProtKB/TrEMBL
UniProt I3M3F8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-26 Btn1a1  butyrophilin subfamily 1 member A1  LOC101959464  butyrophilin subfamily 1 member A1-like  Symbol and/or name change 5135510 APPROVED