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Gene: Tbc1d13 (TBC1 domain family member 13) Ictidomys tridecemlineatus

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Symbol:

Tbc1d13

Name:

TBC1 domain family member 13

RGD ID:

12526307

Description:

ENCODES a protein that exhibits GTPase activator activity (inferred); small GTPase binding (inferred); INVOLVED IN regulation of cilium assembly (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy (ortholog); dystonia (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN cytosol (inferred); membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

TBC1 domain family member 13, transcript variant X1; TBC1 domain family member 13, transcript variant X2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	196,470,619 - 196,509,907 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	16,260,253 - 16,278,429 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936487	16,260,319 - 16,278,434 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

developmental and epileptic encephalopathy (ISO)

dystonia (ISO)

early infantile epileptic encephalopathy (ISO)

primary coenzyme Q10 deficiency 7 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

intracellular protein transport (IEA)

regulation of cilium assembly (ISO)

Cellular Component

cytosol (IEA)

membrane (IEA)

Molecular Function

GTPase activator activity (IEA)

protein binding (ISO)

small GTPase binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Tbc1d13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	196,470,619 - 196,509,907 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	16,260,253 - 16,278,429 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936487	16,260,319 - 16,278,434 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TBC1D13
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	128,787,253 - 128,810,430 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	128,787,253 - 128,810,430 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	131,549,532 - 131,572,709 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	130,589,432 - 130,612,532 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	128,629,164 - 128,652,264	NCBI
Celera	9	102,200,284 - 102,223,500 (+)	NCBI		Celera
Cytogenetic Map	9	q34.11	NCBI
HuRef	9	101,158,509 - 101,181,851 (+)	NCBI		HuRef
CHM1_1	9	131,700,471 - 131,723,717 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	140,992,029 - 141,015,220 (+)	NCBI		T2T-CHM13v2.0

Tbc1d13
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	30,023,742 - 30,042,024 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	30,023,758 - 30,042,025 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	30,133,730 - 30,152,014 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	30,133,746 - 30,152,013 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	29,989,391 - 30,007,533 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	29,955,875 - 29,974,022 (+)	NCBI		MGSCv36	mm8
Celera	2	29,837,391 - 29,855,854 (+)	NCBI		Celera
Cytogenetic Map	2	B	NCBI
cM Map	2	21.22	NCBI

Tbc1d13
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	33,806,772 - 33,823,346 (+)	NCBI		GRCr8
mRatBN7.2	3	13,408,944 - 13,425,524 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	13,408,920 - 13,425,517 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	16,480,974 - 16,497,485 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	25,065,940 - 25,082,451 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	23,319,360 - 23,335,883 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	8,701,849 - 8,718,400 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	8,701,855 - 8,717,515 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	14,053,981 - 14,070,563 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	9,141,842 - 9,158,473 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	8,182,504 - 8,199,087 (+)	NCBI		Celera
Cytogenetic Map	3	p12	NCBI

Tbc1d13
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955570	1,180,179 - 1,190,517 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955570	1,180,154 - 1,192,525 (+)	NCBI	ChiLan1.0	ChiLan1.0

TBC1D13
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	10,540,526 - 10,563,712 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	10,542,873 - 10,566,037 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	99,910,685 - 99,933,856 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	128,576,097 - 128,600,523 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	128,576,246 - 128,597,979 (+)	Ensembl	panpan1.1		panPan2

TBC1D13
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	54,816,325 - 54,831,425 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	54,816,459 - 54,831,333 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	54,009,410 - 54,026,922 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	55,734,964 - 55,752,504 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	55,734,673 - 55,752,409 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	54,495,590 - 54,513,109 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	54,808,356 - 54,825,876 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	54,901,760 - 54,919,303 (-)	NCBI		UU_Cfam_GSD_1.0

TBC1D13
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	269,134,160 - 269,152,284 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	269,134,532 - 269,153,056 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	303,149,248 - 303,168,334 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TBC1D13
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	9,333,341 - 9,362,817 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	9,333,685 - 9,362,675 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666096	115,087 - 140,320 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tbc1d13
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	6,209,542 - 6,224,172 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624760	6,209,802 - 6,224,203 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005321050	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013356727	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040286454	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040286455	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040286456	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000000114 ⟹ ENSSTOP00000000100

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936487	16,260,253 - 16,278,429 (+)	Ensembl

RefSeq Acc Id:

XM_005321050 ⟹ XP_005321107

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	196,491,742 - 196,509,907 (+)	NCBI
SpeTri2.0	NW_004936487	16,260,323 - 16,278,434 (+)	NCBI

Sequence:

show sequence

GTCCCTGGGGGGCGGCGGCGGCGGCGGCGGCGGCGGCTGAGGCTGCGGAGGCAGCTGGGGGGTC
TAGAAGTCAACACCATGTCTAGTCTGCACAAGAGCCGGATTGCAGATTTTCAGGATGTCCTGAA
GGAGCCTTCAATTGCATTGGAAAAGCTGCGGGAACTCAGTTTTAGTGGCATCCCCTGTGAGGGC
GGACTGCGGTGCCTCTGCTGGAAGATCTTGTTGAACTACCTCCCCCTGGAGAGAGCCACATGGA
CTTCCATCCTGGCCAAGCAGAGGGAGCTATATTCTCAGTTCCTGAGGGAAATGATCATACAGCC
TGGCATTGCCAAGGCCAACATGGGTGTATCCAGGGAGGATGTGACCTTTGAGGACCATCCCCTC
AACCCCAGCCCCGACAGCCGGTGGAACACGTACTTCAAGGACAACGAGGTACTGCTGCAGATCG
ACAAAGATGTCCGGAGGTTGTGCCCAGACATATCCTTCTTCCAGAGGGCCACTGAATACCCCTG
TCTCCTCATCCTGGACCCTCAAAATGAGTTTGAGACCCTTCGTAAGCGGGTGGAACAGACAACA
CTGAAATCCCAGACAGTGGCCCGGAATCGGAGCGGGGTCACAAATATGAGCTCCCCCCACAAGA
ACTCTGTGCCACCATCCCTGGATGAGTACGAGGTGCTGCCCAATGGCTGTGAGGCCCACTGGGA
GGTGGTGGAGCGCATTCTGTTCATCTATGCCAAGCTCAACCCTGGCATCGCTTACGTGCAGGGC
ATGAATGAGATTGTGGGGCCCCTCTACTACACCTTTGCCACGGATCCCAACAGCGAATGGAAAG
AGCACGCTGAGGCAGATACCTTCTTCTGCTTCACCAACCTCATGGCCGAGATCCGGGACAACTT
CATCAAAAGCCTGGATGACTCGCAGTGTGGTATCACCTACAAGATGGAAAAGGTGTACTCCACC
TTGAAGGATAAAGATGTGGAACTCTATCTAAAACTGCAAGAGCAGAATATCAAGCCCCAGTTCT
TTGCCTTCCGCTGGCTGACACTGCTGCTGTCCCAGGAGTTCTTGCTGCCTGATGTCATCCGTAT
CTGGGACTCCCTCTTTGCTGATGACAACCGCTTTGACTTCCTTCTCCTCGTCTGCTGTGCCATG
CTCATACTGATCCGGGAGCAGTTGCTGGAAGGCGACTTCACCATCAACATGCGGCTCCTGCAGG
ATTACCCCATCACAGATGTCTGCCAGATCCTACAGAAAGCCAAGGAACTCCAAGACTCAAAGTA
GCCTGACAGCAAGAGGCCCAGATTAGGGAGAACGTGTCCTCTGTCCTCTGGCTCCTGGAATGTG
TAGCGTCCTGAGGGGAAGCAGCAGGTCTTCTGGCCTGCTCTCACAACCCAGGCTGCTCCCACGT
GGGCGCACTGTGCTGTGCTCCTTCCCGGCCGCCACCAAGCCCTGGTACCTTCTTTGCTCTTCAG
CTCTGGGACCCTCTGCCCAAGCTGCTGAGCAGGAATGGAGCTCCTGAACTTGTTTCTCTGTTGG
GGACACAGGATCCTGGCAAGGGACCCTCCCTGCCTCTGCTCTGTTGCTCTCCATCCTTTCCTGC
TTCCAGTTTCCTCCTGGGTGCTGGTTGGGGAGGTGCTTGGCAAATGGGCCAGAAACCACTTCTG
GGGTTGGTGCTTAGGCTTCTCTGAGAGGAAAGTGACACCAGAGGAGCTAAGCAACTGCCAGGCT
AGGGCCACCCCTTGTCTCCCACTGAGCGTGTGTGTCTCCTCACAGCCGCCAGTGGTGTCTGTGT
CCCAGAATCCCCCAGGTGTTCTGCCTCTGTGTGCACATGCATTTGGAGGTGGGGAGGGTGTCTT
GGAGCCCCTCCAGGTCTCCCTGCTTCCCCTTCTCTGTTTCTCTCCTCCCTCTGCTTTGTTCCTA
GAGGTGTATGTGATACTCTATTCCTCTCCCATTACTGTTTCTCTGCCCTTTTCCTTGGGGTGCC
TTATCCTGAGCCTATCCCCACCTCCACTCCATGAAACCTGGAGACAGAATGAGGAGTCTGGCTC
AGCAAGGCCCCTGATGGTCAACCTTGGCCTTGGTCATCCCCCAACTTGAGGCTCCCAGTTCCCC
CAGACTGGGAAGGAGTCCACAGTGCCTCACTGGAGGGATCTGATCCTGCTCTCCAGAACAGAAA
TCTTGGAAACCAAAAGTAGCTGAGAAATGGTGGCCCATGTTTTCTCTTGCCCCTGTTTTCTACC
CAGGACTGGAGGCAGGAGAGGGAGCCCAGGTGTTTGCAAGAAGTTCTCCCAAAGGTCCTCCTGT
CTCAAAGGAAAAGGACATTAAGATGGCTGTGAACAGGGGTTGGCATCCGAGTGCTTCAGAAATG
TTGTCATCCTCTTGACTTCCAGCCAGGTCCCAACCCAGGGGTGTACACAAGTCCCAACCCAGGG
GTGTTCACAGGTCCCATAAAGGGCATTTGGGACCTAATGAAGCCTCCCTGGGTCCTGATGTAGC
TGGACATATAGATTGGATCCTGTCAGTGTCAGGGGGCCATGTCTGCACCTTGGTGTGTCCTCCA
CGCACCAAGGGAGGTGCTGGCCCTCCCCCTCTAGTCACCTGCTTGGGATGTTCCCAGGACTTGG
GACTGGGGTATCCTGAGCAGGAGCCACTGACTGCTCCCAGTTCTGCAAGGAGTGTGTTGTGTTC
TGACCACATCCCTTCCCAGCCTTTGAGAAGGGCAGGTGGTCTGGATCTGGAAGGCTGGGCAGAG
CAAGGGTCCTCACCCTCTCCCCAGACTGGCCAGGAGCTGGCCCAAGCAGCCCCCAAAGCTTTGC
TGAGTCTGGCAGGCAGGGCCTCCTGCTGCCCTGAGGCCGCTCTGTGGGCCCAGGGTCTCCTCCC
CAGGTTTTTGCCTCGGGGGCTGCCAGGGCTGCTGCACTTGCCTCTTTGCCGCCTTCTCTCCTGT
CACAGACCTGGAGATTCTTTCCTATTTATTCTGATTCCTGGCTATTTATTGTAGGTAGGCAAGT
GCTTTGGGGTGGGGTGGGGTGGGGGCTGGGAAGATAGGAGTCGGAAGCCTAGTCTTTTTGTTTC
TCAAGGTCAACAATGACATCTTCCCCTGCTTCTGGGTCCTTCTGGATTTCCATCAGATCCTGGC
TGGGATGGCTGTGAACTGGAGTTGAGTGTAGGGAAACCAGATAGCTGGTGTCCATGCCAGATTC
AGAGACCCCGGAAATGGGGCAGAGACATACTCTTGCCAGGCTGGCCACCCTTCACCCAGAACTT
GTCAGCTTTAGTTCCACCCCAGCTTTGCCCCCGTCACAACTTGAAGCTTGGGCCACTGCCTGGG
ACCCAGCAGACACTGCCCAGGACACCCGATGCATTCCCTCCTACTTGTCCCTGGCTTCCTTCCT
GGGACCATACTACTTGAATCACTGCATCTGATTTTCGTCAGTGGGAAAGTCCAGTGCCCTCCTT
GTCCTTCAGATGAAGGTCAAGAGCCCAGGGACATGTCTTGGTTAAGCTGAACTCCCCAGTGGGA
TACTGTCTGAGGAAGGGACCTACCCTTGATGCCTCCTCTCCAGATTCTCAAGGGAGATCCAGAG
TCAGAGTGCCTGAGGCTTCTACTGGGAAGCTGCCCGAGGACCTTGGTCACTACAGCTTAAGCTG
TGAGTGCAGAAGGTCTCAGTCCAGAGGGTCAGAGTGGTAATCTGCTTTTTTTTTTTTTTTTCAT
GTGTTTTGTTCTTTGAATCAGTGCTGTTGATGATGAGTTGTCTTTAATAAATCATGTGTTCTTT
ACAGTGGG

hide sequence

RefSeq Acc Id:

XM_013356727 ⟹ XP_013212181

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	196,491,843 - 196,509,907 (+)	NCBI
SpeTri2.0	NW_004936487	16,260,319 - 16,278,434 (+)	NCBI

Sequence:

show sequence

CCGCGTCCCTGGGGGGCGGCGGCGGCGGCGGCGGCGGCGGCTGAGGCTGCGGAGGCAGCTGGGG
GGTCTAGAAGTCAACACCATGTCTAGTCTGCACAAGAGCCGGATTGCAGATTTTCAGGATGTCC
TGAAGGAGCCTTCAATTGCATTGGAAAAGCTGCGGGAACTCAGTTTTAGTGATCTTGTTGAACT
ACCTCCCCCTGGAGAGAGCCACATGGACTTCCATCCTGGCCAAGCAGAGGGAGCTATATTCTCA
GTTCCTGAGGGAAATGATCATACAGCCTGGCATTGCCAAGGCCAACATGGGTGTATCCAGGGAG
GATGTGACCTTTGAGGACCATCCCCTCAACCCCAGCCCCGACAGCCGGTGGAACACGTACTTCA
AGGACAACGAGGTACTGCTGCAGATCGACAAAGATGTCCGGAGGTTGTGCCCAGACATATCCTT
CTTCCAGAGGGCCACTGAATACCCCTGTCTCCTCATCCTGGACCCTCAAAATGAGTTTGAGACC
CTTCGTAAGCGGGTGGAACAGACAACACTGAAATCCCAGACAGTGGCCCGGAATCGGAGCGGGG
TCACAAATATGAGCTCCCCCCACAAGAACTCTGTGCCACCATCCCTGGATGAGTACGAGGTGCT
GCCCAATGGCTGTGAGGCCCACTGGGAGGTGGTGGAGCGCATTCTGTTCATCTATGCCAAGCTC
AACCCTGGCATCGCTTACGTGCAGGGCATGAATGAGATTGTGGGGCCCCTCTACTACACCTTTG
CCACGGATCCCAACAGCGAATGGAAAGAGCACGCTGAGGCAGATACCTTCTTCTGCTTCACCAA
CCTCATGGCCGAGATCCGGGACAACTTCATCAAAAGCCTGGATGACTCGCAGTGTGGTATCACC
TACAAGATGGAAAAGGTGTACTCCACCTTGAAGGATAAAGATGTGGAACTCTATCTAAAACTGC
AAGAGCAGAATATCAAGCCCCAGTTCTTTGCCTTCCGCTGGCTGACACTGCTGCTGTCCCAGGA
GTTCTTGCTGCCTGATGTCATCCGTATCTGGGACTCCCTCTTTGCTGATGACAACCGCTTTGAC
TTCCTTCTCCTCGTCTGCTGTGCCATGCTCATACTGATCCGGGAGCAGTTGCTGGAAGGCGACT
TCACCATCAACATGCGGCTCCTGCAGGATTACCCCATCACAGATGTCTGCCAGATCCTACAGAA
AGCCAAGGAACTCCAAGACTCAAAGTAGCCTGACAGCAAGAGGCCCAGATTAGGGAGAACGTGT
CCTCTGTCCTCTGGCTCCTGGAATGTGTAGCGTCCTGAGGGGAAGCAGCAGGTCTTCTGGCCTG
CTCTCACAACCCAGGCTGCTCCCACGTGGGCGCACTGTGCTGTGCTCCTTCCCGGCCGCCACCA
AGCCCTGGTACCTTCTTTGCTCTTCAGCTCTGGGACCCTCTGCCCAAGCTGCTGAGCAGGAATG
GAGCTCCTGAACTTGTTTCTCTGTTGGGGACACAGGATCCTGGCAAGGGACCCTCCCTGCCTCT
GCTCTGTTGCTCTCCATCCTTTCCTGCTTCCAGTTTCCTCCTGGGTGCTGGTTGGGGAGGTGCT
TGGCAAATGGGCCAGAAACCACTTCTGGGGTTGGTGCTTAGGCTTCTCTGAGAGGAAAGTGACA
CCAGAGGAGCTAAGCAACTGCCAGGCTAGGGCCACCCCTTGTCTCCCACTGAGCGTGTGTGTCT
CCTCACAGCCGCCAGTGGTGTCTGTGTCCCAGAATCCCCCAGGTGTTCTGCCTCTGTGTGCACA
TGCATTTGGAGGTGGGGAGGGTGTCTTGGAGCCCCTCCAGGTCTCCCTGCTTCCCCTTCTCTGT
TTCTCTCCTCCCTCTGCTTTGTTCCTAGAGGTGTATGTGATACTCTATTCCTCTCCCATTACTG
TTTCTCTGCCCTTTTCCTTGGGGTGCCTTATCCTGAGCCTATCCCCACCTCCACTCCATGAAAC
CTGGAGACAGAATGAGGAGTCTGGCTCAGCAAGGCCCCTGATGGTCAACCTTGGCCTTGGTCAT
CCCCCAACTTGAGGCTCCCAGTTCCCCCAGACTGGGAAGGAGTCCACAGTGCCTCACTGGAGGG
ATCTGATCCTGCTCTCCAGAACAGAAATCTTGGAAACCAAAAGTAGCTGAGAAATGGTGGCCCA
TGTTTTCTCTTGCCCCTGTTTTCTACCCAGGACTGGAGGCAGGAGAGGGAGCCCAGGTGTTTGC
AAGAAGTTCTCCCAAAGGTCCTCCTGTCTCAAAGGAAAAGGACATTAAGATGGCTGTGAACAGG
GGTTGGCATCCGAGTGCTTCAGAAATGTTGTCATCCTCTTGACTTCCAGCCAGGTCCCAACCCA
GGGGTGTACACAAGTCCCAACCCAGGGGTGTTCACAGGTCCCATAAAGGGCATTTGGGACCTAA
TGAAGCCTCCCTGGGTCCTGATGTAGCTGGACATATAGATTGGATCCTGTCAGTGTCAGGGGGC
CATGTCTGCACCTTGGTGTGTCCTCCACGCACCAAGGGAGGTGCTGGCCCTCCCCCTCTAGTCA
CCTGCTTGGGATGTTCCCAGGACTTGGGACTGGGGTATCCTGAGCAGGAGCCACTGACTGCTCC
CAGTTCTGCAAGGAGTGTGTTGTGTTCTGACCACATCCCTTCCCAGCCTTTGAGAAGGGCAGGT
GGTCTGGATCTGGAAGGCTGGGCAGAGCAAGGGTCCTCACCCTCTCCCCAGACTGGCCAGGAGC
TGGCCCAAGCAGCCCCCAAAGCTTTGCTGAGTCTGGCAGGCAGGGCCTCCTGCTGCCCTGAGGC
CGCTCTGTGGGCCCAGGGTCTCCTCCCCAGGTTTTTGCCTCGGGGGCTGCCAGGGCTGCTGCAC
TTGCCTCTTTGCCGCCTTCTCTCCTGTCACAGACCTGGAGATTCTTTCCTATTTATTCTGATTC
CTGGCTATTTATTGTAGGTAGGCAAGTGCTTTGGGGTGGGGTGGGGTGGGGGCTGGGAAGATAG
GAGTCGGAAGCCTAGTCTTTTTGTTTCTCAAGGTCAACAATGACATCTTCCCCTGCTTCTGGGT
CCTTCTGGATTTCCATCAGATCCTGGCTGGGATGGCTGTGAACTGGAGTTGAGTGTAGGGAAAC
CAGATAGCTGGTGTCCATGCCAGATTCAGAGACCCCGGAAATGGGGCAGAGACATACTCTTGCC
AGGCTGGCCACCCTTCACCCAGAACTTGTCAGCTTTAGTTCCACCCCAGCTTTGCCCCCGTCAC
AACTTGAAGCTTGGGCCACTGCCTGGGACCCAGCAGACACTGCCCAGGACACCCGATGCATTCC
CTCCTACTTGTCCCTGGCTTCCTTCCTGGGACCATACTACTTGAATCACTGCATCTGATTTTCG
TCAGTGGGAAAGTCCAGTGCCCTCCTTGTCCTTCAGATGAAGGTCAAGAGCCCAGGGACATGTC
TTGGTTAAGCTGAACTCCCCAGTGGGATACTGTCTGAGGAAGGGACCTACCCTTGATGCCTCCT
CTCCAGATTCTCAAGGGAGATCCAGAGTCAGAGTGCCTGAGGCTTCTACTGGGAAGCTGCCCGA
GGACCTTGGTCACTACAGCTTAAGCTGTGAGTGCAGAAGGTCTCAGTCCAGAGGGTCAGAGTGG
TAATCTGCTTTTTTTTTTTTTTTTCATGTGTTTTGTTCTTTGAATCAGTGCTGTTGATGATGAG
TTGTCTTTAATAAATCATGTGTTCTTTACAGTGGG

hide sequence

RefSeq Acc Id:

XM_040286454 ⟹ XP_040142388

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	196,470,619 - 196,509,907 (+)	NCBI

RefSeq Acc Id:

XM_040286455 ⟹ XP_040142389

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	196,470,619 - 196,509,907 (+)	NCBI

RefSeq Acc Id:

XM_040286456 ⟹ XP_040142390

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	196,470,619 - 196,509,907 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005321107	(Get FASTA)	NCBI Sequence Viewer
	XP_013212181	(Get FASTA)	NCBI Sequence Viewer
	XP_040142388	(Get FASTA)	NCBI Sequence Viewer
	XP_040142389	(Get FASTA)	NCBI Sequence Viewer
	XP_040142390	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000000100.2
GenBank Protein	KAG3288125	(Get FASTA)	NCBI Sequence Viewer
	KAG3288126	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005321107 ⟸ XM_005321050
- Peptide Label:	isoform X1
- UniProtKB:	I3LVZ9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSLHKSRIADFQDVLKEPSIALEKLRELSFSGIPCEGGLRCLCWKILLNYLPLERATWTSILA KQRELYSQFLREMIIQPGIAKANMGVSREDVTFEDHPLNPSPDSRWNTYFKDNEVLLQIDKDVR RLCPDISFFQRATEYPCLLILDPQNEFETLRKRVEQTTLKSQTVARNRSGVTNMSSPHKNSVPP SLDEYEVLPNGCEAHWEVVERILFIYAKLNPGIAYVQGMNEIVGPLYYTFATDPNSEWKEHAEA DTFFCFTNLMAEIRDNFIKSLDDSQCGITYKMEKVYSTLKDKDVELYLKLQEQNIKPQFFAFRW LTLLLSQEFLLPDVIRIWDSLFADDNRFDFLLLVCCAMLILIREQLLEGDFTINMRLLQDYPIT DVCQILQKAKELQDSK hide sequence

RefSeq Acc Id:

XP_013212181 ⟸ XM_013356727

- Peptide Label:

isoform X2

- Sequence:

show sequence

MIIQPGIAKANMGVSREDVTFEDHPLNPSPDSRWNTYFKDNEVLLQIDKDVRRLCPDISFFQRA
TEYPCLLILDPQNEFETLRKRVEQTTLKSQTVARNRSGVTNMSSPHKNSVPPSLDEYEVLPNGC
EAHWEVVERILFIYAKLNPGIAYVQGMNEIVGPLYYTFATDPNSEWKEHAEADTFFCFTNLMAE
IRDNFIKSLDDSQCGITYKMEKVYSTLKDKDVELYLKLQEQNIKPQFFAFRWLTLLLSQEFLLP
DVIRIWDSLFADDNRFDFLLLVCCAMLILIREQLLEGDFTINMRLLQDYPITDVCQILQKAKEL
QDSK

hide sequence

RefSeq Acc Id:	XP_040142389 ⟸ XM_040286455
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_040142388 ⟸ XM_040286454
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_040142390 ⟸ XM_040286456
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSSTOP00000000100 ⟸ ENSSTOT00000000114

Protein Domains

Rab-GAP TBC

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000000112	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000000114.3	UniProtKB/TrEMBL
Gene3D-CATH	putative rabgap domain of human tbc1 domain family member 14 like domains	UniProtKB/TrEMBL
	Ypt/Rab-GAP domain of gyp1p, domain 3	UniProtKB/TrEMBL
InterPro	Rab-GTPase-TBC_dom	UniProtKB/TrEMBL
	Rab-GTPase_TBC_sf	UniProtKB/TrEMBL
NCBI Gene	Tbc1d13	ENTREZGENE
PANTHER	TBC1 DOMAIN FAMILY MEMBER 13	UniProtKB/TrEMBL
	TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN	UniProtKB/TrEMBL
Pfam	RabGAP-TBC	UniProtKB/TrEMBL
PROSITE	TBC_RABGAP	UniProtKB/TrEMBL
SMART	TBC	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47923	UniProtKB/TrEMBL
UniProt	I3LVZ9	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar