Tbc1d13 (TBC1 domain family, member 13) - Rat Genome Database

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Gene: Tbc1d13 (TBC1 domain family, member 13) Mus musculus
Analyze
Symbol: Tbc1d13
Name: TBC1 domain family, member 13
RGD ID: 1318413
MGI Page MGI
Description: Enables GTPase activator activity and small GTPase binding activity. Involved in intracellular protein transport. Located in cytosol and membrane. Orthologous to human TBC1D13 (TBC1 domain family member 13).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2600014A06Rik; BC025586; MGC38260; TBC1 domain family member 13
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39230,023,742 - 30,042,024 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl230,023,758 - 30,042,025 (+)EnsemblGRCm39 Ensembl
GRCm38230,133,730 - 30,152,014 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl230,133,746 - 30,152,013 (+)EnsemblGRCm38mm10GRCm38
MGSCv37229,989,391 - 30,007,533 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36229,955,875 - 29,974,022 (+)NCBIMGSCv36mm8
Celera229,837,391 - 29,855,854 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map221.22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (IDA)
membrane  (IDA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12904583   PMID:14610273   PMID:14640981   PMID:15489334   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:17967808   PMID:18799693   PMID:21677750   PMID:21873635   PMID:22762500  


Genomics

Comparative Map Data
Tbc1d13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39230,023,742 - 30,042,024 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl230,023,758 - 30,042,025 (+)EnsemblGRCm39 Ensembl
GRCm38230,133,730 - 30,152,014 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl230,133,746 - 30,152,013 (+)EnsemblGRCm38mm10GRCm38
MGSCv37229,989,391 - 30,007,533 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36229,955,875 - 29,974,022 (+)NCBIMGSCv36mm8
Celera229,837,391 - 29,855,854 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map221.22NCBI
TBC1D13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389128,787,253 - 128,810,430 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9128,787,253 - 128,810,430 (+)EnsemblGRCh38hg38GRCh38
GRCh379131,549,532 - 131,572,709 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369130,589,432 - 130,612,532 (+)NCBINCBI36Build 36hg18NCBI36
Build 349128,629,164 - 128,652,264NCBI
Celera9102,200,284 - 102,223,500 (+)NCBICelera
Cytogenetic Map9q34.11NCBI
HuRef9101,158,509 - 101,181,851 (+)NCBIHuRef
CHM1_19131,700,471 - 131,723,717 (+)NCBICHM1_1
T2T-CHM13v2.09140,992,029 - 141,015,220 (+)NCBIT2T-CHM13v2.0
Tbc1d13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8333,806,772 - 33,823,346 (+)NCBIGRCr8
mRatBN7.2313,408,944 - 13,425,524 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl313,408,920 - 13,425,517 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx316,480,974 - 16,497,485 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0325,065,940 - 25,082,451 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0323,319,360 - 23,335,883 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.038,701,849 - 8,718,400 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl38,701,855 - 8,717,515 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0314,053,981 - 14,070,563 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.439,141,842 - 9,158,473 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera38,182,504 - 8,199,087 (+)NCBICelera
Cytogenetic Map3p12NCBI
Tbc1d13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555701,180,179 - 1,190,517 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555701,180,154 - 1,192,525 (+)NCBIChiLan1.0ChiLan1.0
TBC1D13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21110,540,526 - 10,563,712 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1910,542,873 - 10,566,037 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0999,910,685 - 99,933,856 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19128,576,097 - 128,600,523 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9128,576,246 - 128,597,979 (+)Ensemblpanpan1.1panPan2
TBC1D13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1954,816,325 - 54,831,425 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl954,816,459 - 54,831,333 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha954,009,410 - 54,026,922 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0955,734,964 - 55,752,504 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl955,734,673 - 55,752,409 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1954,495,590 - 54,513,109 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0954,808,356 - 54,825,876 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0954,901,760 - 54,919,303 (-)NCBIUU_Cfam_GSD_1.0
Tbc1d13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947196,470,619 - 196,509,907 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648716,260,253 - 16,278,429 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648716,260,319 - 16,278,434 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TBC1D13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1269,134,160 - 269,152,284 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11269,134,532 - 269,153,056 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21303,149,248 - 303,168,334 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TBC1D13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1129,333,341 - 9,362,817 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl129,333,685 - 9,362,675 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666096115,087 - 140,320 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tbc1d13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247606,209,542 - 6,224,172 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247606,209,802 - 6,224,203 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tbc1d13
439 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2109
Count of miRNA genes:772
Interacting mature miRNAs:987
Transcripts:ENSMUST00000044556, ENSMUST00000125142, ENSMUST00000129789, ENSMUST00000131261, ENSMUST00000132324, ENSMUST00000134013, ENSMUST00000136183, ENSMUST00000150879
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1301980Fcsa5_mfemoral cross-sectional area 5 (mouse)Not determined2767911541679261Mouse
1301790Pcfm1_mperiosteal circumference and femur length 1 (mouse)Not determined2823629642236396Mouse
10043876Adip22_madiposity 22 (mouse)Not determined2830805142308240Mouse
1300624Insq7_minsulin QTL 7 (mouse)Not determined2938444643384575Mouse
10755513Amzn4_manatomical modifier of Zfp423 4 (mouse)2938444643384575Mouse
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212953766556453Mouse
1301641Sbmd2_mspinal bone mineral density 2 (mouse)Not determined21421456748214713Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1301376Etohc1_methanol consumption 1 (mouse)Not determined22112972555129871Mouse
4141708Pbwg1.2_mpostnatal body weight growth 1.2 (mouse)Not determined2112972555129871Mouse
13463470Tubisq1_mtubulointerstitial injury severity, QTL 1 (mouse)22368914557689269Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
26884438Sklq12_mskull length QTL 12, 16 week (mouse)22459001254890012Mouse
8552705Cia25_mcollagen induced arthritis 25 (mouse)Not determined22467911533523172Mouse
8552706Cia24_mcollagen induced arthritis QTL 24 (mouse)Not determined22467911533523172Mouse
12792980Fbmd1_mfemoral bone mineral density 1, females only (mouse)22503449245034492Mouse
4142130Pgis2_mproteoglycan induced spondylitis 2 (mouse)Not determined22530805156971811Mouse
12904005Cfq2_mconditioned fear QTL 2 (mouse)22702264256396228Mouse
1300577Capsq1_mcapsaicin sensitivity related QTL 1 (mouse)Not determined22760206084013384Mouse
14746979Manh51_mmandible shape 51 (mouse)22896112962961129Mouse
14746997Mancz2_mmandible centroid size 2 (mouse)22896112962961129Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse

Markers in Region
UniSTS:234359   No map positions available.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_146252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006498320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006498321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006498322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006498323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC091519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL845258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC039215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY206703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY589058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000044556   ⟹   ENSMUSP00000048426
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl230,023,758 - 30,042,025 (+)Ensembl
GRCm38.p6 Ensembl230,133,746 - 30,152,013 (+)Ensembl
RefSeq Acc Id: ENSMUST00000125142
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl230,023,803 - 30,027,191 (+)Ensembl
GRCm38.p6 Ensembl230,133,791 - 30,137,179 (+)Ensembl
RefSeq Acc Id: ENSMUST00000129789
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl230,027,042 - 30,032,536 (+)Ensembl
GRCm38.p6 Ensembl230,137,030 - 30,142,524 (+)Ensembl
RefSeq Acc Id: ENSMUST00000131261   ⟹   ENSMUSP00000120763
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl230,023,818 - 30,026,688 (+)Ensembl
GRCm38.p6 Ensembl230,133,806 - 30,136,676 (+)Ensembl
RefSeq Acc Id: ENSMUST00000132324
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl230,032,291 - 30,037,090 (+)Ensembl
GRCm38.p6 Ensembl230,142,279 - 30,147,078 (+)Ensembl
RefSeq Acc Id: ENSMUST00000134013
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl230,023,833 - 30,027,525 (+)Ensembl
GRCm38.p6 Ensembl230,133,821 - 30,137,513 (+)Ensembl
RefSeq Acc Id: ENSMUST00000136183   ⟹   ENSMUSP00000120228
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl230,023,758 - 30,027,308 (+)Ensembl
GRCm38.p6 Ensembl230,133,746 - 30,137,296 (+)Ensembl
RefSeq Acc Id: ENSMUST00000150879
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl230,023,784 - 30,025,164 (+)Ensembl
GRCm38.p6 Ensembl230,133,772 - 30,135,152 (+)Ensembl
RefSeq Acc Id: NM_146252   ⟹   NP_666364
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39230,023,771 - 30,042,024 (+)NCBI
GRCm38230,133,746 - 30,152,014 (+)NCBI
MGSCv37229,989,391 - 30,007,533 (+)RGD
Celera229,837,391 - 29,855,854 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006498320   ⟹   XP_006498383
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39230,023,763 - 30,042,024 (+)NCBI
GRCm38230,133,751 - 30,152,012 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006498321   ⟹   XP_006498384
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39230,023,765 - 30,042,024 (+)NCBI
GRCm38230,133,753 - 30,152,012 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006498322   ⟹   XP_006498385
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39230,023,742 - 30,042,024 (+)NCBI
GRCm38230,133,730 - 30,152,012 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006498323   ⟹   XP_006498386
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39230,030,542 - 30,042,024 (+)NCBI
GRCm38230,142,437 - 30,152,012 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017319254   ⟹   XP_017174743
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39230,023,763 - 30,042,024 (+)NCBI
GRCm38230,133,751 - 30,152,012 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252062   ⟹   XP_030107922
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39230,023,764 - 30,042,024 (+)NCBI
GRCm38230,133,752 - 30,152,012 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252063   ⟹   XP_030107923
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39230,023,763 - 30,042,024 (+)NCBI
GRCm38230,133,751 - 30,152,012 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252064   ⟹   XP_030107924
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39230,023,766 - 30,042,024 (+)NCBI
GRCm38230,133,754 - 30,152,012 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252065   ⟹   XP_030107925
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39230,023,763 - 30,042,024 (+)NCBI
GRCm38230,133,751 - 30,152,012 (+)NCBI
Sequence:
RefSeq Acc Id: NP_666364   ⟸   NM_146252
- UniProtKB: Q8R3D1 (UniProtKB/Swiss-Prot),   Q3TZ63 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006498383   ⟸   XM_006498320
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006498384   ⟸   XM_006498321
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006498385   ⟸   XM_006498322
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006498386   ⟸   XM_006498323
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017174743   ⟸   XM_017319254
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_030107923   ⟸   XM_030252063
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030107925   ⟸   XM_030252065
- Peptide Label: isoform X4
RefSeq Acc Id: XP_030107922   ⟸   XM_030252062
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030107924   ⟸   XM_030252064
- Peptide Label: isoform X4
RefSeq Acc Id: ENSMUSP00000120763   ⟸   ENSMUST00000131261
RefSeq Acc Id: ENSMUSP00000048426   ⟸   ENSMUST00000044556
RefSeq Acc Id: ENSMUSP00000120228   ⟸   ENSMUST00000136183
Protein Domains
Rab-GAP TBC

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8R3D1-F1-model_v2 AlphaFold Q8R3D1 1-400 view protein structure

Promoters
RGD ID:6832910
Promoter ID:MM_KWN:28503
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000040592,   OTTMUST00000040593,   OTTMUST00000040594,   OTTMUST00000040595,   OTTMUST00000040596,   OTTMUST00000040597,   UC008JBI.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36229,988,836 - 29,989,467 (+)MPROMDB
RGD ID:6832909
Promoter ID:MM_KWN:28504
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour,   Kidney,   Lung
Transcripts:OTTMUST00000040598
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36229,991,556 - 29,993,002 (+)MPROMDB
RGD ID:6832913
Promoter ID:MM_KWN:28505
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Lung
Transcripts:OTTMUST00000040599
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36229,996,801 - 29,997,772 (+)MPROMDB
RGD ID:6876874
Promoter ID:EPDNEW_M1888
Type:initiation region
Name:Tbc1d13_1
Description:Mus musculus TBC1 domain family, member 13 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38230,133,858 - 30,133,918EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2385326 AgrOrtholog
Ensembl Genes ENSMUSG00000039678 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000044556 ENTREZGENE
  ENSMUST00000044556.12 UniProtKB/Swiss-Prot
  ENSMUST00000131261.2 UniProtKB/TrEMBL
  ENSMUST00000136183.8 UniProtKB/TrEMBL
Gene3D-CATH putative rabgap domain of human tbc1 domain family member 14 like domains UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ypt/Rab-GAP domain of gyp1p, domain 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Rab-GTPase-TBC_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rab-GTPase_TBC_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:70296 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2385326 ENTREZGENE
NCBI Gene 70296 ENTREZGENE
PANTHER TBC1 DOMAIN FAMILY MEMBER 13 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RabGAP-TBC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tbc1d13 PhenoGen
PROSITE TBC_RABGAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART TBC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47923 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D6RI34_MOUSE UniProtKB/TrEMBL
  D6RJI8_MOUSE UniProtKB/TrEMBL
  Q3TZ63 ENTREZGENE, UniProtKB/TrEMBL
  Q8R3D1 ENTREZGENE, UniProtKB/Swiss-Prot