Rgs17 (regulator of G protein signaling 17) - Rat Genome Database

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Gene: Rgs17 (regulator of G protein signaling 17) Ictidomys tridecemlineatus
Analyze
Symbol: Rgs17
Name: regulator of G protein signaling 17
RGD ID: 12523564
Description: INVOLVED IN response to amphetamine (ortholog); ASSOCIATED WITH amphetamine abuse (ortholog); autosomal recessive spinocerebellar ataxia 8 (ortholog); chromosome 6q24-q25 deletion syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: regulator of G protein signaling 17, transcript variant X1; regulator of G protein signaling 17, transcript variant X2; regulator of G-protein signaling 17
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946138,366,077 - 138,400,749 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364895,624,525 - 5,652,794 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364895,623,859 - 5,652,740 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

Genomics

Comparative Map Data
Rgs17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946138,366,077 - 138,400,749 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364895,624,525 - 5,652,794 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364895,623,859 - 5,652,740 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RGS17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386153,004,459 - 153,131,282 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6153,004,459 - 153,131,282 (-)EnsemblGRCh38hg38GRCh38
GRCh376153,325,594 - 153,452,417 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366153,373,719 - 153,494,082 (-)NCBINCBI36Build 36hg18NCBI36
Build 346153,424,147 - 153,544,503NCBI
Celera6154,065,698 - 154,186,885 (-)NCBICelera
Cytogenetic Map6q25.2NCBI
HuRef6150,894,828 - 151,015,916 (-)NCBIHuRef
CHM1_16153,595,948 - 153,716,160 (-)NCBICHM1_1
T2T-CHM13v2.06154,205,757 - 154,333,435 (-)NCBIT2T-CHM13v2.0
Rgs17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39105,775,663 - 5,872,413 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl105,775,663 - 5,872,400 (-)EnsemblGRCm39 Ensembl
GRCm38105,825,663 - 5,922,412 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl105,825,663 - 5,922,400 (-)EnsemblGRCm38mm10GRCm38
MGSCv37104,424,141 - 4,520,878 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36104,424,200 - 4,513,768 (+)NCBIMGSCv36mm8
Celera105,759,665 - 5,856,182 (-)NCBICelera
Cytogenetic Map10A1NCBI
cM Map101.91NCBI
Rgs17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8144,627,583 - 44,729,957 (-)NCBIGRCr8
mRatBN7.2142,222,248 - 42,324,625 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl142,227,070 - 42,324,609 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx142,769,813 - 42,876,072 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0148,757,005 - 48,863,271 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0142,845,277 - 42,951,542 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0142,491,566 - 42,587,735 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl142,492,761 - 42,587,721 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0143,821,442 - 43,918,316 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4136,523,685 - 36,623,005 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1136,528,233 - 36,587,444 (-)NCBI
Celera137,894,908 - 37,992,338 (-)NCBICelera
Cytogenetic Map1q11NCBI
Rgs17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554398,687,672 - 8,802,260 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554398,687,775 - 8,805,229 (+)NCBIChiLan1.0ChiLan1.0
RGS17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25173,033,415 - 173,159,797 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16170,926,266 - 171,052,768 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06150,826,838 - 150,953,386 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16155,521,826 - 155,555,151 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6155,521,826 - 155,555,151 (-)Ensemblpanpan1.1panPan2
RGS17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1143,170,815 - 43,264,277 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl143,174,861 - 43,264,233 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha144,006,019 - 44,101,969 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0143,351,937 - 43,448,218 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl143,356,366 - 43,448,494 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1143,219,387 - 43,315,030 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0143,082,813 - 43,179,038 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0143,570,545 - 43,666,573 (-)NCBIUU_Cfam_GSD_1.0
RGS17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl113,340,355 - 13,442,039 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1113,340,253 - 13,442,058 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2115,590,394 - 15,689,403 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RGS17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11380,493,900 - 80,620,714 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604052,819,781 - 52,940,843 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rgs17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247855,086,765 - 5,218,367 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247855,086,828 - 5,225,147 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000009978   ⟹   ENSSTOP00000008950
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364895,624,525 - 5,652,794 (-)Ensembl
RefSeq Acc Id: XM_005321384   ⟹   XP_005321441
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404946138,366,077 - 138,400,749 (-)NCBI
SpeTri2.0NW_0049364895,623,859 - 5,652,740 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021723924   ⟹   XP_021579599
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404946138,366,077 - 138,400,749 (-)NCBI
SpeTri2.0NW_0049364895,623,859 - 5,652,740 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005321441 (Get FASTA)   NCBI Sequence Viewer  
  XP_021579599 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000008950.3
GenBank Protein KAG3290476 (Get FASTA)   NCBI Sequence Viewer  
  KAG3290477 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005321441   ⟸   XM_005321384
- Peptide Label: isoform X2
- UniProtKB: I3MEK9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021579599   ⟸   XM_021723924
- Peptide Label: isoform X1
- UniProtKB: I3MEK9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000008950   ⟸   ENSSTOT00000009978
Protein Domains
RGS


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000009988 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000009978.3 UniProtKB/TrEMBL
Gene3D-CATH 1.10.167.10 UniProtKB/TrEMBL
InterPro RGS UniProtKB/TrEMBL
  RGS_sf UniProtKB/TrEMBL
  RGS_subdomain_2 UniProtKB/TrEMBL
NCBI Gene Rgs17 ENTREZGENE
PANTHER REGULATOR OF G PROTEIN SIGNALING UniProtKB/TrEMBL
  REGULATOR OF G-PROTEIN SIGNALING 17 UniProtKB/TrEMBL
Pfam RGS UniProtKB/TrEMBL
PRINTS RGSPROTEIN UniProtKB/TrEMBL
PROSITE RGS UniProtKB/TrEMBL
SMART RGS UniProtKB/TrEMBL
Superfamily-SCOP SSF48097 UniProtKB/TrEMBL
UniProt I3MEK9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-07-13 Rgs17  regulator of G protein signaling 17    regulator of G-protein signaling 17  Symbol and/or name change 5135510 APPROVED