Srrm3 (serine/arginine repetitive matrix 3) - Rat Genome Database

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Gene: Srrm3 (serine/arginine repetitive matrix 3) Ictidomys tridecemlineatus
Analyze
Symbol: Srrm3
Name: serine/arginine repetitive matrix 3
RGD ID: 12513127
Description: ENCODES a protein that exhibits mRNA binding (inferred); ASSOCIATED WITH Chromosome 7q11.23 Deletion Syndrome, Distal, 1.2-MB (ortholog); genetic disease (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: serine/arginine repetitive matrix protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344131,862,759 - 131,915,515 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365432,121,141 - 2,173,837 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365432,121,052 - 2,169,982 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

Molecular Function
mRNA binding  (IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Srrm3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344131,862,759 - 131,915,515 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365432,121,141 - 2,173,837 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365432,121,052 - 2,169,982 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SRRM3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38776,201,896 - 76,287,287 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl776,201,896 - 76,287,288 (+)EnsemblGRCh38hg38GRCh38
GRCh37775,831,214 - 75,916,604 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36775,752,311 - 75,754,554 (+)NCBINCBI36Build 36hg18NCBI36
Celera770,699,693 - 70,785,104 (+)NCBICelera
Cytogenetic Map7q11.23NCBI
HuRef770,917,643 - 71,002,839 (+)NCBIHuRef
CHM1_1775,761,269 - 75,846,725 (+)NCBICHM1_1
T2T-CHM13v2.0777,489,369 - 77,574,760 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2775,164,280 - 75,249,669 (+)NCBI
Srrm3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395135,835,693 - 135,903,627 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5135,835,744 - 135,903,626 (+)EnsemblGRCm39 Ensembl
GRCm385135,806,860 - 135,874,773 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5135,806,890 - 135,874,772 (+)EnsemblGRCm38mm10GRCm38
MGSCv375136,293,976 - 136,350,642 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365136,091,517 - 136,126,595 (+)NCBIMGSCv36mm8
Celera5132,825,431 - 132,882,977 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map575.42NCBI
Srrm3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81226,445,718 - 26,515,185 (-)NCBIGRCr8
mRatBN7.21220,808,878 - 20,878,557 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1220,809,089 - 20,878,505 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1221,950,502 - 22,020,439 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01222,562,898 - 22,632,853 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01221,629,399 - 21,699,325 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01223,855,400 - 23,925,793 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1223,855,400 - 23,925,741 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01225,853,016 - 25,923,187 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41221,927,594 - 22,005,675 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1222,572,450 - 22,641,548 (-)NCBICelera
Cytogenetic Map12q12NCBI
Srrm3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545614,855,077 - 14,914,315 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545614,855,387 - 14,914,315 (+)NCBIChiLan1.0ChiLan1.0
SRRM3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2693,666,193 - 93,751,179 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17141,930,831 - 142,015,817 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0767,732,909 - 67,818,031 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1782,653,155 - 82,736,257 (+)NCBIpanpan1.1PanPan1.1panPan2
SRRM3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.167,426,779 - 7,481,780 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl67,426,560 - 7,471,140 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha69,142,662 - 9,177,350 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.067,267,515 - 7,302,227 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl67,267,507 - 7,300,923 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.167,236,580 - 7,271,268 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.067,199,580 - 7,234,250 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.067,363,019 - 7,397,715 (+)NCBIUU_Cfam_GSD_1.0
SRRM3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl310,046,538 - 10,102,124 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1310,046,538 - 10,102,149 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.239,998,451 - 10,030,087 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SRRM3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12810,336,615 - 10,424,545 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2810,364,092 - 10,422,922 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660705,994,074 - 6,076,806 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Srrm3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474014,873,396 - 14,929,008 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474014,873,340 - 14,929,023 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000014188   ⟹   ENSSTOP00000012710
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365432,122,424 - 2,153,657 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000035399   ⟹   ENSSTOP00000026932
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365432,121,141 - 2,173,837 (-)Ensembl
RefSeq Acc Id: XM_040278583   ⟹   XP_040134517
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344131,862,759 - 131,915,515 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040134517 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000012710.3
  ENSSTOP00000026932.1
Reference Protein Sequences
RefSeq Acc Id: XP_040134517   ⟸   XM_040278583
- UniProtKB: I3MMF6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000012710   ⟸   ENSSTOT00000014188
RefSeq Acc Id: ENSSTOP00000026932   ⟸   ENSSTOT00000035399
Protein Domains
cwf21


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000014181 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000014188.3 UniProtKB/TrEMBL
  ENSSTOT00000035399.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.420 UniProtKB/TrEMBL
InterPro mRNA_splic_Cwf21_dom UniProtKB/TrEMBL
  SRRM3_cwf21 UniProtKB/TrEMBL
  SRRM_C UniProtKB/TrEMBL
NCBI Gene Srrm3 ENTREZGENE
PANTHER SERINE/ARGININE REPETITIVE MATRIX PROTEIN 3 UniProtKB/TrEMBL
  SERINE/ARGININE REPETITIVE MATRIX PROTEIN 3-RELATED UniProtKB/TrEMBL
Pfam cwf21 UniProtKB/TrEMBL
  SRRM_C UniProtKB/TrEMBL
SMART cwf21 UniProtKB/TrEMBL
UniProt A0A287D043_ICTTR UniProtKB/TrEMBL
  I3MMF6 ENTREZGENE, UniProtKB/TrEMBL