Calml6 (calmodulin like 6) - Rat Genome Database

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Gene: Calml6 (calmodulin like 6) Ictidomys tridecemlineatus
Analyze
Symbol: Calml6
Name: calmodulin like 6
RGD ID: 12511850
Description: ENCODES a protein that exhibits calcium ion binding (inferred); metal ion binding (inferred); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); congenital myasthenic syndrome 8 (ortholog); dilated cardiomyopathy 1LL (ortholog); FOUND IN cytoplasm (inferred); myosin II complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: calmodulin-like protein 6
RGD Orthologs
Human
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505827,995,862 - 27,997,778 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367371,468,269 - 1,469,445 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367371,468,172 - 1,470,326 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Calml6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505827,995,862 - 27,997,778 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367371,468,269 - 1,469,445 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367371,468,172 - 1,470,326 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CALML6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811,915,260 - 1,917,296 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11,915,108 - 1,917,296 (+)EnsemblGRCh38hg38GRCh38
GRCh3711,846,699 - 1,848,735 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611,836,126 - 1,838,593 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411,878,427 - 1,880,895NCBI
Celera1746,319 - 748,788 (-)NCBICelera
Cytogenetic Map1p36.33NCBI
HuRef11,123,248 - 1,125,717 (+)NCBIHuRef
CHM1_111,833,291 - 1,835,760 (+)NCBICHM1_1
T2T-CHM13v2.011,348,173 - 1,351,716 (+)NCBIT2T-CHM13v2.0
CALML6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21226,358,238 - 226,362,495 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11225,014,109 - 225,018,356 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01619,689 - 623,308 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111,778,101 - 1,780,581 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11,778,101 - 1,780,581 (+)Ensemblpanpan1.1panPan2
CALML6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1556,901,401 - 56,904,422 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl556,901,715 - 56,904,424 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha556,976,182 - 56,979,707 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0557,102,639 - 57,106,164 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl557,103,457 - 57,106,166 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1557,093,203 - 57,096,728 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0556,985,711 - 56,989,236 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0557,375,553 - 57,379,078 (+)NCBIUU_Cfam_GSD_1.0
CALML6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1663,970,359 - 63,971,973 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2658,549,051 - 58,550,770 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CALML6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366605434,027,697 - 34,029,723 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Calml6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248187,920,401 - 7,921,517 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005339234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000025745   ⟹   ENSSTOP00000016185
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367371,468,269 - 1,469,445 (-)Ensembl
RefSeq Acc Id: XM_005339234   ⟹   XP_005339291
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505827,995,862 - 27,997,778 (+)NCBI
SpeTri2.0NW_0049367371,468,172 - 1,470,326 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005339291 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000016185.2
GenBank Protein KAG3281935 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005339291   ⟸   XM_005339234
- UniProtKB: I3MVP0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000016185   ⟸   ENSSTOT00000025745
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000026712 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000025745.2 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro Ca-Reg_Muscle_Contr_Cell_Proc UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
NCBI Gene Calml6 ENTREZGENE
PANTHER CALMODULIN 2 UniProtKB/TrEMBL
  MYOSIN LIGHT CHAIN 1, 3 UniProtKB/TrEMBL
Pfam EF-hand_7 UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt I3MVP0 ENTREZGENE, UniProtKB/TrEMBL