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Gene: Calml6 (calmodulin like 6) Ictidomys tridecemlineatus

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Symbol:

Calml6

Name:

calmodulin like 6

RGD ID:

12511850

Description:

ENCODES a protein that exhibits calcium ion binding (inferred); metal ion binding (inferred); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); congenital myasthenic syndrome 8 (ortholog); dilated cardiomyopathy 1LL (ortholog); FOUND IN cytoplasm (inferred); myosin II complex (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

calmodulin-like protein 6

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	27,995,862 - 27,997,778 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936737	1,468,269 - 1,469,445 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936737	1,468,172 - 1,470,326 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Calml6	Squirrel	chromosome 1p36 deletion syndrome		ISO	RGD:1346825	8554872	ClinVar Annotator: match by term: Chromosome 1p36 deletion syndrome	ClinVar
Calml6	Squirrel	congenital myasthenic syndrome 8		ISO	RGD:1346825	8554872	ClinVar Annotator: match by term: Congenital myasthenic syndrome 8	ClinVar	PMID:24951643\|PMID:28492532
Calml6	Squirrel	dilated cardiomyopathy 1LL		ISO	RGD:1346825	8554872	ClinVar Annotator: match by term: Left ventricular noncompaction 8	ClinVar	PMID:28492532
Calml6	Squirrel	Ehlers-Danlos syndrome spondylodysplastic type 2		ISO	RGD:1346825	8554872	ClinVar Annotator: match by term: Ehlers-Danlos syndrome, spondylodysplastic type, 2	ClinVar	PMID:10862081\|PMID:19492091\|PMID:21031596\|PMID:26477546\|PMID:28492532\|PMID:31674007\|PMID:9683594
Calml6	Squirrel	Goldberg-Shprintzen syndrome		ISO	RGD:1346825	8554872	ClinVar Annotator: match by term: Shprintzen-Goldberg syndrome	ClinVar	PMID:23892090\|PMID:28492532\|PMID:31602316
Calml6	Squirrel	Idiopathic Generalized Epilepsy		ISO	RGD:1346825	8554872	ClinVar Annotator: match by term: Idiopathic generalized epilepsy	ClinVar	PMID:28492532
Calml6	Squirrel	immunodeficiency 16		ISO	RGD:1346825	8554872	ClinVar Annotator: match by term: Combined immunodeficiency due to OX40 deficiency	ClinVar	PMID:10862081\|PMID:19492091\|PMID:21031596\|PMID:26477546\|PMID:28492532\|PMID:31674007\|PMID:9683594
Calml6	Squirrel	immunodeficiency 38		ISO	RGD:1346825	8554872	ClinVar Annotator: match by term: Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency	ClinVar	PMID:10862081\|PMID:19492091\|PMID:21031596\|PMID:26477546\|PMID:28492532\|PMID:31674007\|PMID:9683594
Calml6	Squirrel	Joubert syndrome 25		ISO	RGD:1346825	8554872	ClinVar Annotator: match by term: Joubert syndrome 25	ClinVar	PMID:10862081\|PMID:19492091\|PMID:21031596\|PMID:26477546\|PMID:28492532\|PMID:31674007\|PMID:9683594
Calml6	Squirrel	Neurodevelopmental Disorders		ISO	RGD:1346825	8554872	ClinVar Annotator: match by term: Neurodevelopmental disorder	ClinVar	PMID:25741868
Calml6	Squirrel	Peroxisome Biogenesis Disorder, Complementation Group 7		ISO	RGD:1346825	8554872	ClinVar Annotator: match by term: Peroxisome biogenesis disorder, complementation group 7	ClinVar	PMID:10862081\|PMID:19492091\|PMID:21031596\|PMID:26477546\|PMID:28492532\|PMID:31674007\|PMID:9683594
Calml6	Squirrel	Shprintzen-Goldberg Craniosynostosis		ISO	RGD:1346825	8554872	ClinVar Annotator: match by term: Shprintzen-Goldberg syndrome	ClinVar	PMID:23892090\|PMID:28492532\|PMID:31602316

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Calml6	Squirrel	cytoplasm	located_in	IEA	UniProtKB-SubCell:SL-0086	150520179		UniProt	GO_REF:0000044
Calml6	Squirrel	myosin II complex	part_of	IEA	PANTHER:PTN009059579	150520179		TreeGrafter	GO_REF:0000118

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Calml6	Squirrel	calcium ion binding	enables	IEA	InterPro:IPR002048	150520179		InterPro	GO_REF:0000002
Calml6	Squirrel	metal ion binding	enables	IEA	UniProtKB-KW:KW-0479	150520179		UniProt	GO_REF:0000043
Calml6	Squirrel	protein binding	enables	ISO	UniProtKB:P48539	9068941	PMID:32296183	IntAct	PMID:32296183

PMID:22301074	PMID:30032202

Calml6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	27,995,862 - 27,997,778 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936737	1,468,269 - 1,469,445 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936737	1,468,172 - 1,470,326 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CALML6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	1,915,260 - 1,917,296 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	1,915,108 - 1,917,296 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	1,846,699 - 1,848,735 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	1,836,126 - 1,838,593 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	1,878,427 - 1,880,895	NCBI
Celera	1	746,319 - 748,788 (-)	NCBI		Celera
Cytogenetic Map	1	p36.33	NCBI
HuRef	1	1,123,248 - 1,125,717 (+)	NCBI		HuRef
CHM1_1	1	1,833,291 - 1,835,760 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	1,348,173 - 1,351,716 (+)	NCBI		T2T-CHM13v2.0

CALML6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	226,358,238 - 226,362,495 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	225,014,109 - 225,018,356 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	619,689 - 623,308 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	1,778,101 - 1,780,581 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	1,778,101 - 1,780,581 (+)	Ensembl	panpan1.1		panPan2

CALML6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	56,901,401 - 56,904,422 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	56,901,715 - 56,904,424 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	56,976,182 - 56,979,707 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	57,102,639 - 57,106,164 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	57,103,457 - 57,106,166 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	57,093,203 - 57,096,728 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	56,985,711 - 56,989,236 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	57,375,553 - 57,379,078 (+)	NCBI		UU_Cfam_GSD_1.0

CALML6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	6	63,970,359 - 63,971,973 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	58,549,051 - 58,550,770 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CALML6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Vero_WHO_p1.0	NW_023666054	34,027,697 - 34,029,723 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Calml6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624818	7,920,401 - 7,921,517 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_005339234	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000117	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000025745 ⟹ ENSSTOP00000016185

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936737	1,468,269 - 1,469,445 (-)	Ensembl

RefSeq Acc Id:

XM_005339234 ⟹ XP_005339291

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	27,995,862 - 27,997,778 (+)	NCBI
SpeTri2.0	NW_004936737	1,468,172 - 1,470,326 (-)	NCBI

Sequence:

show sequence

GCCTCGCAAGAGGGTCCCCAGAACACAGGAAAGCCAGCTCTGGGGGTGGCCAACCTCTGGGGGGACCTCCTAGGAGGCTGCACCATGAAGAGGAAACAGCATCAGGGCCCCGCAGCTGGCCAGTGCCT
CTCTGTCCTGTGCTTGTCTCTGGCATGCATCTTAGGGTTTGCTGTGCCAGTGTTGCGTTGCTCTCCTGACCAGCCACAGACATGACGGAGCGCCTGTCCGCTGAGCAGATCAAGGAATACAAGGGGGT
CTTTGAGATGTTTGATGAGGAGGGCAACGGGGAGGTGAAGACCGGAGAGCTGGAGCGGCTCATGAGCCTGTTGGGCATCAACCCCACCAAGAGCGAACTGGCCTCCATGGCCAAGGACGTGGACAGAG
ACAACAAAGGCTTCTTCAACTGTGATGGTTTCTTGGCGCTGATGGGGATTTACCATGAGAAGGCCCAGAACCAGGAGGGAGAGCTGAGGGCAGCGTTCCGGGTCTTCGATAAGGAGAGCAAGGGCTAC
ATCGACTGGAACACACTCAAGTACGTGCTCATGAATGCAGGGGAGCCCCTCAACGAGGTGGAGGCTGAGCAGATGATGAAAGAGGCAGACAAGGACGGAGACGGGACCATCGACTATGAGGAGTTCGT
GGCCATGATGACCGGAGAGTCCTTCAAGCTGGTTCAGTAAGAGCAGCTGCTGTGGCTCTAGGAGGCCTGCCCAGGAGGCCATGGCCTGCCACTGCCTGCCCTGCCCCTCACTGTGTCAAATAAATGCT
GCAATCTGA

hide sequence


Protein RefSeqs	XP_005339291	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000016185.2
GenBank Protein	KAG3281935	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005339291 ⟸ XM_005339234
- UniProtKB:	I3MVP0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTERLSAEQIKEYKGVFEMFDEEGNGEVKTGELERLMSLLGINPTKSELASMAKDVDRDNKGFFNCDGFLALMGIYHEKAQNQEGELRAAFRVFDKESKGYIDWNTLKYVLMNAGEPLNEVEAEQMMK EADKDGDGTIDYEEFVAMMTGESFKLVQ hide sequence

Ensembl Acc Id:

ENSSTOP00000016185 ⟸ ENSSTOT00000025745

Protein Domains

EF-hand

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000026712	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000025745.2	UniProtKB/TrEMBL
Gene3D-CATH	EF-hand	UniProtKB/TrEMBL
InterPro	Ca-Reg_Muscle_Contr_Cell_Proc	UniProtKB/TrEMBL
	EF-hand-dom_pair	UniProtKB/TrEMBL
	EF_Hand_1_Ca_BS	UniProtKB/TrEMBL
	EF_hand_dom	UniProtKB/TrEMBL
NCBI Gene	Calml6	ENTREZGENE
PANTHER	CALMODULIN 2	UniProtKB/TrEMBL
	MYOSIN LIGHT CHAIN 1, 3	UniProtKB/TrEMBL
Pfam	EF-hand_7	UniProtKB/TrEMBL
PROSITE	EF_HAND_1	UniProtKB/TrEMBL
	EF_HAND_2	UniProtKB/TrEMBL
SMART	EFh	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47473	UniProtKB/TrEMBL
UniProt	I3MVP0	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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