Fam83a (family with sequence similarity 83 member A) - Rat Genome Database

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Gene: Fam83a (family with sequence similarity 83 member A) Ictidomys tridecemlineatus
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Symbol: Fam83a
Name: family with sequence similarity 83 member A
RGD ID: 12507860
Description: ENCODES a protein that exhibits identical protein binding (inferred); phosphatidylinositol 3-kinase regulatory subunit binding (inferred); protein kinase binding (inferred); INVOLVED IN cell population proliferation (inferred); epidermal growth factor receptor signaling pathway (inferred); positive regulation of adipose tissue development (inferred); ASSOCIATED WITH Disease Progression (ortholog); Neoplasm Invasiveness (ortholog); Ovarian Neoplasms (ortholog); FOUND IN cytoplasm (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530316,693,578 - 16,712,309 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647024,119,636 - 24,138,420 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647024,119,688 - 24,138,413 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Fam83aSquirreltrichorhinophalangeal syndrome type I  ISORGD:16028458554872ClinVar Annotator: match by term: Trichorhinophalangeal dysplasia type IClinVarPMID:25741868
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Fam83aSquirrelDisease Progression  ISORGD:16028459068941CTD Direct Evidence: marker/mechanismCTDPMID:34931434
Fam83aSquirrelNeoplasm Invasiveness  ISORGD:16028459068941CTD Direct Evidence: marker/mechanismCTDPMID:34931434
Fam83aSquirrelOvarian Neoplasms  ISORGD:16028459068941CTD Direct Evidence: marker/mechanismCTDPMID:34931434


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Fam83aSquirrelcell population proliferation involved_inIEAUniProtKB:Q86UY5|ensembl:ENSP00000509471150520179 EnsemblGO_REF:0000107
Fam83aSquirrelepidermal growth factor receptor signaling pathway involved_inIEAUniProtKB:Q86UY5|ensembl:ENSP00000509471150520179 EnsemblGO_REF:0000107
Fam83aSquirrelepidermal growth factor receptor signaling pathway involved_inIEAPANTHER:PTN000415299150520179 TreeGrafterGO_REF:0000118
Fam83aSquirrelpositive regulation of adipose tissue development involved_inIEAUniProtKB:Q8K2P2|ensembl:ENSMUSP00000125464150520179 EnsemblGO_REF:0000107
Fam83aSquirrelsignal transduction involved_inIEAPANTHER:PTN000415299150520179 TreeGrafterGO_REF:0000118
Fam83aSquirrelwhite fat cell differentiation involved_inIEAUniProtKB:Q8K2P2|ensembl:ENSMUSP00000125464150520179 EnsemblGO_REF:0000107

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Fam83aSquirrelcytoplasm located_inIEAUniProtKB:Q8K2P2|ensembl:ENSMUSP00000125464150520179 EnsemblGO_REF:0000107
Fam83aSquirrelmitochondrion located_inIEAUniProtKB:Q8K2P2|ensembl:ENSMUSP00000125464150520179 EnsemblGO_REF:0000107

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Fam83aSquirrelidentical protein binding enablesIEAUniProtKB:Q86UY5|ensembl:ENSP00000509471150520179 EnsemblGO_REF:0000107
Fam83aSquirrelphosphatidylinositol 3-kinase regulatory subunit binding enablesIEAUniProtKB:Q86UY5|ensembl:ENSP00000509471150520179 EnsemblGO_REF:0000107
Fam83aSquirrelprotein binding enablesISOUniProtKB:A0A6Q8PF08|UniProtKB:P06396|UniProtKB:P22607|UniProtKB:Q9UMX0|UniProtKB:Q9Y6499068941 PMID:32814053IntActPMID:32814053
Fam83aSquirrelprotein binding enablesISOUniProtKB:A8MQ03|UniProtKB:O14503|UniProtKB:O43639|UniProtKB:O75593|UniProtKB:O76011|UniProtKB:P25788|UniProtKB:P47897|UniProtKB:P57075-2|UniProtKB:Q12951-2|UniProtKB:Q15038|UniProtKB:Q3LI66|UniProtKB:Q3LI67|UniProtKB:Q86YR5-3|UniProtKB:Q8IUC2|UniProtKB:Q8NB12|UniProtKB:Q96CN9|UniProtKB:Q96T49|UniProtKB:Q9GZV8|UniProtKB:Q9UPG8|UniProtKB:Q9Y5V39068941 PMID:32296183IntActPMID:32296183
Fam83aSquirrelprotein binding enablesISOUniProtKB:P496749068941 PMID:29789297, PMID:33961781IntActPMID:29789297|PMID:33961781
Fam83aSquirrelprotein binding enablesISOUniProtKB:P14373|UniProtKB:P364069068941 PMID:25416956IntActPMID:25416956
Fam83aSquirrelprotein kinase binding enablesIEAPANTHER:PTN000415299150520179 TreeGrafterGO_REF:0000118
Fam83aSquirrelprotein kinase binding enablesIEAUniProtKB:Q86UY5|ensembl:ENSP00000509471150520179 EnsemblGO_REF:0000107

PMID:30032202  



Fam83a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530316,693,578 - 16,712,309 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647024,119,636 - 24,138,420 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647024,119,688 - 24,138,413 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM83A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388123,179,047 - 123,210,079 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8123,178,960 - 123,210,079 (+)EnsemblGRCh38hg38GRCh38
GRCh378124,191,287 - 124,222,319 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368124,263,933 - 124,291,499 (+)NCBINCBI36Build 36hg18NCBI36
Celera8120,383,791 - 120,411,357 (+)NCBICelera
Cytogenetic Map8q24.13NCBI
HuRef8119,520,504 - 119,547,938 (+)NCBIHuRef
CHM1_18124,235,040 - 124,262,606 (+)NCBICHM1_1
T2T-CHM13v2.08124,310,090 - 124,341,215 (+)NCBIT2T-CHM13v2.0
Fam83a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391557,847,983 - 57,874,102 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1557,848,815 - 57,874,405 (+)EnsemblGRCm39 Ensembl
GRCm381557,984,587 - 58,010,706 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1557,985,419 - 58,011,009 (+)EnsemblGRCm38mm10GRCm38
MGSCv371557,817,458 - 57,842,261 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361557,815,993 - 57,825,685 (+)NCBIMGSCv36mm8
Celera1559,506,624 - 59,530,729 (+)NCBICelera
Cytogenetic Map15D1NCBI
cM Map1524.17NCBI
Fam83a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8791,412,366 - 91,436,819 (+)NCBIGRCr8
mRatBN7.2789,522,826 - 89,547,284 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl789,522,826 - 89,547,388 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx791,400,071 - 91,424,464 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0793,601,354 - 93,625,746 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0793,419,371 - 93,443,641 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0797,855,773 - 97,880,227 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl797,855,636 - 97,881,955 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0798,462,331 - 98,486,785 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4794,692,898 - 94,717,221 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera786,295,417 - 86,319,863 (+)NCBICelera
Cytogenetic Map7q33NCBI
Fam83a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555402,070,396 - 2,089,665 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555402,070,396 - 2,095,341 (+)NCBIChiLan1.0ChiLan1.0
FAM83A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27140,612,746 - 140,643,154 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18116,125,306 - 116,153,636 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08119,877,517 - 119,905,848 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18122,633,373 - 122,659,864 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8122,633,373 - 122,661,709 (+)Ensemblpanpan1.1panPan2
FAM83A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11321,566,083 - 21,590,291 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1321,566,059 - 21,589,976 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1321,531,225 - 21,555,182 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01321,902,312 - 21,929,536 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1321,901,936 - 21,930,406 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11321,630,684 - 21,658,201 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01321,736,217 - 21,760,846 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01321,979,058 - 22,004,032 (+)NCBIUU_Cfam_GSD_1.0
FAM83A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl416,169,708 - 16,184,941 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1416,169,697 - 16,186,015 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2416,913,828 - 16,929,188 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAM83A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18117,758,303 - 117,786,891 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8117,759,343 - 117,784,691 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603922,445,130 - 22,473,945 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

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RefSeq Transcripts XM_005316187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000003120   ⟹   ENSSTOP00000002788
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647024,119,636 - 24,138,420 (-)Ensembl
RefSeq Acc Id: XM_005316187   ⟹   XP_005316244
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530316,693,578 - 16,712,309 (-)NCBI
SpeTri2.0NW_00493647024,119,688 - 24,138,413 (-)NCBI
Sequence:
Protein RefSeqs XP_005316244 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000002788.2
GenBank Protein KAG3273657 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005316244   ⟸   XM_005316187
- UniProtKB: I3M1Q1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000002788   ⟸   ENSSTOT00000003120
Scaffolding anchor of CK1



1 to 11 of 11 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSTOG00000003122 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000003120.3 UniProtKB/TrEMBL
Gene3D-CATH Endonuclease Chain A UniProtKB/TrEMBL
InterPro FAM83 UniProtKB/TrEMBL
  FAM83_N UniProtKB/TrEMBL
NCBI Gene Fam83a ENTREZGENE
PANTHER PROTEIN FAM83A-RELATED UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam FAM83 UniProtKB/TrEMBL
Superfamily-SCOP Phospholipase D/nuclease UniProtKB/TrEMBL
UniProt I3M1Q1 ENTREZGENE, UniProtKB/TrEMBL
1 to 11 of 11 rows