Ppy (pancreatic polypeptide) - Rat Genome Database

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Gene: Ppy (pancreatic polypeptide) Ictidomys tridecemlineatus
Analyze
Symbol: Ppy
Name: pancreatic polypeptide
RGD ID: 12496230
Description: ENCODES a protein that exhibits G protein-coupled receptor binding (inferred); hormone activity (inferred); neuropeptide hormone activity (inferred); INVOLVED IN feeding behavior (inferred); neuropeptide signaling pathway (inferred); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); FOUND IN cytoplasm (inferred); extracellular region (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: pancreatic prohormone
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560218,730,726 - 18,731,524 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936541463,068 - 464,542 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936541463,069 - 463,872 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ppy
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560218,730,726 - 18,731,524 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936541463,068 - 464,542 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936541463,069 - 463,872 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPY
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381743,940,804 - 43,944,215 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1743,940,804 - 43,942,476 (-)EnsemblGRCh38hg38GRCh38
GRCh371742,018,172 - 42,019,844 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361739,373,698 - 39,375,359 (-)NCBINCBI36Build 36hg18NCBI36
Build 341739,373,698 - 39,374,548NCBI
Celera1738,726,213 - 38,727,874 (-)NCBICelera
Cytogenetic Map17q21.31NCBI
HuRef1737,782,442 - 37,784,103 (-)NCBIHuRef
CHM1_11742,253,758 - 42,255,419 (-)NCBICHM1_1
T2T-CHM13v2.01744,793,351 - 44,796,763 (-)NCBIT2T-CHM13v2.0
Ppy
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911101,990,757 - 101,992,145 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11101,990,756 - 101,992,145 (-)EnsemblGRCm39 Ensembl
GRCm3811102,099,931 - 102,101,319 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11102,099,930 - 102,101,319 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711101,961,245 - 101,962,614 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611101,916,021 - 101,917,390 (-)NCBIMGSCv36mm8
Celera11113,805,823 - 113,807,218 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1165.48NCBI
Ppy
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81087,554,941 - 87,556,236 (-)NCBIGRCr8
mRatBN7.21087,054,747 - 87,056,044 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1087,054,756 - 87,055,455 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1092,084,611 - 92,085,906 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01091,556,506 - 91,557,781 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01086,949,824 - 86,951,097 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01090,041,582 - 90,043,316 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1090,041,591 - 90,042,877 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01089,831,063 - 89,832,358 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41091,167,958 - 91,169,253 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11091,182,327 - 91,183,623 (-)NCBI
Celera1085,772,353 - 85,773,648 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
Ppy
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545117,155,876 - 17,156,214 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545117,155,681 - 17,156,829 (-)NCBIChiLan1.0ChiLan1.0
PPY
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21920,963,508 - 20,965,182 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11722,927,788 - 22,929,460 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01713,452,839 - 13,454,513 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11713,619,132 - 13,620,788 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1713,619,936 - 13,620,788 (+)Ensemblpanpan1.1panPan2
PPY
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1919,394,185 - 19,395,750 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl919,394,183 - 19,395,750 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha918,784,564 - 18,785,316 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0920,089,261 - 20,090,853 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl920,090,101 - 20,090,853 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1918,943,380 - 18,944,132 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0919,126,341 - 19,127,093 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0919,271,259 - 19,272,011 (+)NCBIUU_Cfam_GSD_1.0
PPY
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1219,217,806 - 19,218,559 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11219,217,649 - 19,218,680 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21219,451,675 - 19,455,138 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PPY
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11662,450,284 - 62,453,995 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1662,453,141 - 62,453,871 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607733,225,253 - 33,228,638 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ppy
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624795908,495 - 909,435 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005328096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000007347   ⟹   ENSSTOP00000006564
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936541463,068 - 464,542 (-)Ensembl
RefSeq Acc Id: XM_005328096   ⟹   XP_005328153
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560218,730,726 - 18,731,524 (+)NCBI
SpeTri2.0NW_004936541463,069 - 463,872 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005328153 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000006564.2
GenBank Protein KAG3268836 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005328153   ⟸   XM_005328096
- UniProtKB: I3M9J3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000006564   ⟸   ENSSTOT00000007347


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000007364 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000007347.3 UniProtKB/TrEMBL
Gene3D-CATH 6.10.250.900 UniProtKB/TrEMBL
InterPro Pancreatic_hormone-like UniProtKB/TrEMBL
  Pancreatic_hormone-like_CS UniProtKB/TrEMBL
NCBI Gene Ppy ENTREZGENE
PANTHER PTHR10533 UniProtKB/TrEMBL
  PTHR10533:SF2 UniProtKB/TrEMBL
Pfam Hormone_3 UniProtKB/TrEMBL
PRINTS PANCHORMONE UniProtKB/TrEMBL
PROSITE PANCREATIC_HORMONE_1 UniProtKB/TrEMBL
  PANCREATIC_HORMONE_2 UniProtKB/TrEMBL
SMART PAH UniProtKB/TrEMBL
UniProt I3M9J3 ENTREZGENE, UniProtKB/TrEMBL