Fetub (fetuin B) - Rat Genome Database

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Gene: Fetub (fetuin B) Ictidomys tridecemlineatus
Analyze
Symbol: Fetub
Name: fetuin B
RGD ID: 12494347
Description: ENCODES a protein that exhibits cysteine-type endopeptidase inhibitor activity (inferred); metalloendopeptidase inhibitor activity (inferred); INVOLVED IN negative regulation of endopeptidase activity (ortholog); ASSOCIATED WITH 3MC syndrome 1 (ortholog); Spontaneous Abortions (ortholog); FOUND IN extracellular region (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: fetuin-B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602117,210,109 - 117,225,168 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365783,302,084 - 3,310,536 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365783,302,005 - 3,310,536 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Fetub
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602117,210,109 - 117,225,168 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365783,302,084 - 3,310,536 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365783,302,005 - 3,310,536 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FETUB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383186,635,969 - 186,653,141 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3186,635,969 - 186,653,141 (+)EnsemblGRCh38hg38GRCh38
GRCh373186,353,758 - 186,370,930 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363187,840,843 - 187,853,491 (+)NCBINCBI36Build 36hg18NCBI36
Build 343187,840,850 - 187,853,498NCBI
Celera3184,794,517 - 184,807,165 (+)NCBICelera
Cytogenetic Map3q27.3NCBI
HuRef3183,767,693 - 183,780,343 (+)NCBIHuRef
CHM1_13186,322,116 - 186,334,762 (+)NCBICHM1_1
T2T-CHM13v2.03189,451,683 - 189,468,852 (+)NCBIT2T-CHM13v2.0
Fetub
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391622,737,132 - 22,758,518 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1622,737,084 - 22,758,528 (+)EnsemblGRCm39 Ensembl
GRCm381622,918,382 - 22,939,768 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1622,918,334 - 22,939,778 (+)EnsemblGRCm38mm10GRCm38
MGSCv371622,918,455 - 22,939,841 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361622,835,635 - 22,855,086 (+)NCBIMGSCv36mm8
Celera1623,478,707 - 23,499,723 (+)NCBICelera
Cytogenetic Map16B1NCBI
cM Map1613.76NCBI
Fetub
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81191,586,750 - 91,599,789 (-)NCBIGRCr8
mRatBN7.21178,082,158 - 78,093,022 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1178,082,156 - 78,095,135 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1186,832,633 - 86,843,497 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01179,490,850 - 79,501,599 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01178,546,941 - 78,557,807 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01181,648,890 - 81,660,472 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1181,648,885 - 81,660,395 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01184,745,605 - 84,758,630 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41180,276,852 - 80,285,039 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11180,334,442 - 80,342,628 (-)NCBI
Celera1176,955,006 - 76,965,868 (-)NCBICelera
Cytogenetic Map11q23NCBI
Fetub
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542021,040,621 - 21,054,391 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542021,041,419 - 21,054,043 (-)NCBIChiLan1.0ChiLan1.0
FETUB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22184,511,004 - 184,528,937 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13184,515,719 - 184,533,652 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03183,675,258 - 183,687,754 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13192,142,595 - 192,155,297 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3192,142,702 - 192,154,920 (+)Ensemblpanpan1.1panPan2
FETUB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13419,259,362 - 19,273,030 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3419,259,357 - 19,273,030 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3423,344,736 - 23,358,404 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03419,170,300 - 19,183,973 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3419,170,391 - 19,213,757 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13419,202,641 - 19,216,289 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03419,202,473 - 19,216,130 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03419,430,947 - 19,444,615 (+)NCBIUU_Cfam_GSD_1.0
FETUB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13124,460,272 - 124,494,196 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113124,480,456 - 124,494,197 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213133,870,414 - 133,884,133 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FETUB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1152,773,057 - 2,790,944 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl152,770,927 - 2,790,248 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606311,509,843 - 11,526,819 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fetub
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473070,090,385 - 70,107,199 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473070,092,056 - 70,112,025 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000012580   ⟹   ENSSTOP00000011273
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365783,302,084 - 3,310,536 (-)Ensembl
RefSeq Acc Id: XM_040270163   ⟹   XP_040126097
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405602117,210,109 - 117,225,168 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040126097 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000011273.3
GenBank Protein KAG3271128 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040126097   ⟸   XM_040270163
- UniProtKB: I3MJF0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000011273   ⟸   ENSSTOT00000012580
Protein Domains
Cystatin fetuin-B-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000012584 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000012580.3 UniProtKB/TrEMBL
Gene3D-CATH 3.10.450.10 UniProtKB/TrEMBL
InterPro Cystatin_dom UniProtKB/TrEMBL
  Cystatin_Fetuin_B UniProtKB/TrEMBL
  Cystatin_sf UniProtKB/TrEMBL
  Kininogen_Fetuin_HRG UniProtKB/TrEMBL
NCBI Gene Fetub ENTREZGENE
PANTHER FETUIN UniProtKB/TrEMBL
  FETUIN-B UniProtKB/TrEMBL
Pfam Cystatin UniProtKB/TrEMBL
PROSITE CYSTATIN_FETUIN_B UniProtKB/TrEMBL
SMART SM00043 UniProtKB/TrEMBL
Superfamily-SCOP SSF54403 UniProtKB/TrEMBL
UniProt I3MJF0 ENTREZGENE, UniProtKB/TrEMBL