Advanced Search (OLGA)

Gene: Znf41 (zinc finger protein 41) Ictidomys tridecemlineatus

Analyze

Symbol:

Znf41

Name:

zinc finger protein 41

RGD ID:

12486326

Description:

ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); RNA polymerase II cis-regulatory region sequence-specific DNA binding (inferred); zinc ion binding (inferred); INVOLVED IN regulation of DNA-templated transcription (inferred); regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH autistic disorder (ortholog); cognitive disorder (ortholog); congenital disorder of glycosylation type IIm (ortholog); FOUND IN nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

zinc finger protein 41, transcript variant X1; zinc finger protein 41, transcript variant X2; zinc finger protein 41, transcript variant X3; zinc finger protein 41, transcript variant X4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZNF41 (zinc finger protein 41)	NCBI	Ortholog
Chinchilla lanigera (long-tailed chinchilla):	Znf41 (zinc finger protein 41)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZNF41 (zinc finger protein 41)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZNF41 (zinc finger protein 41)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZNF41 (zinc finger protein 41)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZNF41 (zinc finger protein 41)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Znf41 (zinc finger protein 41)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	33,335,385 - 33,386,149 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936502	13,178,189 - 13,227,257 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936502	13,176,781 - 13,226,872 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

cognitive disorder (ISO)

congenital disorder of glycosylation type IIm (ISO)

Developmental Disabilities (ISO)

immune dysregulation-polyendocrinopathy-enteropathy-X-linked syndrome (ISO)

neurodegeneration with brain iron accumulation 5 (ISO)

non-syndromic X-linked intellectual disability (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

X-linked epilepsy with variable learning disabilities and behavior disorders (ISO)

X-Linked Intellectual Developmental Disorders (ISO)

X-linked severe congenital neutropenia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of DNA-templated transcription (IEA)

regulation of transcription by RNA polymerase II (IEA)

Cellular Component

nucleus (IEA)

Molecular Function

DNA-binding transcription factor activity, RNA polymerase II-specific (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IEA)

zinc ion binding (IEA)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Znf41
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	33,335,385 - 33,386,149 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936502	13,178,189 - 13,227,257 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936502	13,176,781 - 13,226,872 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZNF41
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	47,445,178 - 47,483,222 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	47,445,178 - 47,483,222 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	47,304,577 - 47,342,621 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	47,191,347 - 47,227,289 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	X	47,062,657 - 47,098,599	NCBI
Celera	X	51,500,825 - 51,537,610 (-)	NCBI		Celera
Cytogenetic Map	X	p11.3	NCBI
HuRef	X	45,018,484 - 45,055,126 (-)	NCBI		HuRef
CHM1_1	X	47,336,693 - 47,373,468 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	X	46,855,058 - 46,893,113 (-)	NCBI		T2T-CHM13v2.0

Znf41
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955516	611,591 - 646,109 (+)	NCBI	ChiLan1.0	ChiLan1.0

ZNF41
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	49,074,354 - 49,112,547 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	49,076,095 - 49,115,919 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	39,881,999 - 39,922,058 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	47,777,784 - 47,820,046 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	47,777,784 - 47,818,791 (-)	Ensembl	panpan1.1		panPan2

ZNF41
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	41,031,507 - 41,072,759 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	41,032,742 - 41,071,949 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	15,406,568 - 15,447,850 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	41,165,779 - 41,207,053 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	41,164,276 - 41,207,325 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	41,153,327 - 41,194,594 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	41,141,230 - 41,182,496 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	41,234,341 - 41,275,611 (-)	NCBI		UU_Cfam_GSD_1.0

ZNF41
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	41,934,977 - 41,984,595 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	41,931,036 - 41,984,439 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

ZNF41
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	44,623,464 - 44,663,024 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666076	9,873,075 - 9,916,411 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Znf41
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624887	4,276,293 - 4,292,722 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013358014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021725590	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021725591	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021725592	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040278448	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040278528	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040278554	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040278614	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040278655	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000614	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000030565 ⟹ ENSSTOP00000028251

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936502	13,178,189 - 13,226,898 (-)	Ensembl

Ensembl Acc Id:

ENSSTOT00000042723 ⟹ ENSSTOP00000030772

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936502	13,178,189 - 13,227,257 (-)	Ensembl

RefSeq Acc Id:

XM_021725590 ⟹ XP_021581265

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	X	33,335,385 - 33,386,148 (-)	NCBI
SpeTri2.0	NW_004936502	13,176,781 - 13,226,872 (-)	NCBI

Sequence:

show sequence

CTTCCGGTGGGTAGGGGGACAACCAAGGCTTTGGTACTCTGATGGCTAAGGTGAAGCGGTCTCT
GACGCAACTAACTCCTATAGGCTGCGGCGGAGGGAAGGGAAGCCCGGTGGTACAGTCCTCGACC
TTCGCCTTGGCCCCCGAGAAATTGCACTGGGAAAGATAGGGTGGGAAAGCGCGGCCTCCGTGGC
CGAAGCGACCAGCCTTCCAAGATGGCGGCTCCCATAGAGGCAATCCCAAGGGGACAGCCATGTT
CCTTGCCTGACAGTCACTGAAGAAAATTGGAAAGCCCGCCTCTCCTCCGACACTCTCGCACACT
CACGCACCGATGCCGTGTAAGTGCGCCGGGTGTAATTGTGGGCCACTGGACCAGTGGCTGCTTC
GAAGCTGACAGTGAGCATGTGCAGAACAAGTCCAGAAACTCAAGGGTCCCTCAAAACAGTTTCA
AGCCTTAAGAGTGCAGGAGGTTAACAGGCAGATTAAAGGCCAGTTAAACATCGAGATGAGATTA
TTACAAGGGTGTGATGACCGGATTTCCTATCAATGATGGTACTCTGTAGGGTGGACACAATATC
TTTATTTTATTTTTATGGTTGTTGAGGATCATACCCAGTGCCCCGCACATGCCAGCTTTCTTGG
AGCCTCTGCAGAGTCCCTGGACCAGAACAGTTAGTGGGGACTGCAGGATCTTCCTTCTAACCAG
GCTCGACTGTGCCGCCAGACCTGGGTGAGCCCACAGATGCCAGCCCAGCTTCAAGCCCCTGGGA
AGGGTCAAATCATCAGCAGGAGAGCCTAAGGGCCCAGGCCCAGCATGAACATGCCAGCCAATGG
AGATTCTCTCCAGTCGTCCCTGGCCCTGGCTGCAGAGAAACATGGCGGCTCACTTGAGGTATCC
ATATCATTTGAGGATGTGACTGTGAACTTCAGCAGGGAGGAGTGGCAGCATTTGGACCCTGTTC
AGAGACGCCTGTACTGGGATGTGACACTGGAGAACTACCATCATCTGATCTCAGTGGGTGAAGA
TATTAGGAAAACTCAACAACAGGAAATTTCTGGAGAAGTTTCATTCCACTGTGAGAGATTTGAT
CAACCCACAGGAGAAGATTCACTGTGTTCCATTTTGGAAGAACTGTGGCAAGAGAATGATCAAC
TAGAGAGATATCAGGAAAACCAGATGAACCCTTTAAGTCTTGTCAAAATATTAATTAAGGAGAG
GGGCTACGAATGTCAAAACCTTGAAAGAATAATTCACATGACTACCAAGCTTGTTCCTTCAATT
AAAAGACTCCATAAATATGACACATTTGGAAAGAGTTTGAAGCATACTTTAAACTTACATAATT
ATAACCAAAGCACTGCAACAAAGAATCTTGAGAGGATATTTGGAAATGGTAACAATTTCGCTGA
CAGTTCTTTCTCTACTAAGAATGAGAATACTAACACAAGAGCGAATTCCCATGGACATAATCAG
TGTGAAGAACACGTCAATCACAAACAAACTCTCATTGATCATCAGAAAATTCCTACTGGGGAGA
AACTTCACGGATGTAGTAAATGTGTAAAGGGCTTCAGTCAGAAGTTGGATCTCTTTGGACATCA
GAAAATTCATGCTGGAGAAAAATTCCATGGATGCAACAAAAGTGAGAAAGTCTTCACTCAGAAG
CCAAAAATTGATAGACATCAGAGTATTCAGATAGGAGAGAAACCCTATGTATGTACTCAATGTG
GGAAGGCCTTTACCTTCAAGTCAAACCTCATTACACACCAGAAAATTCATACTGGGCAGAAGCC
CTATAAATGCAGTGAATGTGGGAAAGCCTTTTTCCAGAAATCAGATCTCTTTAGACATCTGCGA
ATTCATACAGGAGAAAAACCTTATGAATGTAGTGAGTGTGGAAAAGGCTTCTCCCAGAATTCAG
ACCTCAGTATACATCAGAAAACTCATACCGGAGAGAAACACTATGAATGCAGCGAATGTGGAAA
AGCCTTCACAAGAAAATCTGCCCTCAGGATGCATCAGAGAATTCACACAGGAGAGAAACCTTAT
GTGTGTACTGAATGTGGGAAGGCCTTCATCCAGAAATCACACTTCAATACACATCAGAGAATTC
ACACTGGAGAGAAACCTTATGAATGCAGAGACTGTGGGAAATCATTCACTAAGAAGTCGCAGCT
CCATGTGCATCAGCGAATTCACACAGGAGAGAAACCCTACATATGTACAGAGTGTGGAAAGGTC
TTCACTCATAGGACAAATCTCACCACACATCAGAAGACTCACACTGGGGAGAAGCCCTATATGT
GTGCTGAATGTGGGAAGGCTTTTACTGATCAGTCTAATCTCATCAAACACCAAAAAACTCATAC
TGGAGAGAAACCCTATAAATGCAATGGCTGTGGGAAAGCTTTCATATGGAAGTCACGCCTCAAA
ATCCATCAGAAATCTCATATTGGAGAGAGACACTATGTGTGCAAGGAATGTGGGAAAGCCTTTA
TCCAGAAATCAACACTAAGAGTGCATCAGAGAATTCACACAGGGGAGAAACCCTATGTTTGTCC
TGAATGTGGAAAGGCTTTCATCCAGAAATCACATTTCATTGCACACCATAGAATTCATACTGGA
GAAAAGCCTTATGAATGTGGTGACTGTGGAAAATGCTTCACTAAGAAGTCACAGCTCCGGGTAC
ATCAGAAAATTCACACAGGCGAGAAACCCAATATATGTGCTGAATGTGGAAAGGCCTTCACGGA
TCGGTCAAATCTCATAACACACCAGAAAATCCATACAAGGGAGAAACCCTATAAATGCAGTGAC
TGTGGAAAAACCTTTACCTGGAAGTCACGCCTCAATATACATCAGAAATCCCATACTGGAGAGA
GACACTATGAATGCAGTAAATGTGGGAAAGCATTTATCCAAAAAGCAACACTCAGCATGCATCA
GATAATTCATACAGGAAAGAAACCTTATGCTTGTACAGAATGTCAGAGAGCTTTCACTGACAGA
TCGAATCTTATTAAACACCAGAAAACACACAGTGGAGAAAAACACTACAAAGCCAGTGACTGAA
GGCTGTTTCAGAACTGGAAATCACAGCACATCCATCAGATAGGTCCTAGTGGTAAAGAGGAATG
CCTGATGCTGCAATCACTGTGCAGGGGGAAGTAGAAATGAGAGGCAGTGACCTGAGGGAGCAGA
AGCCAGGCAAAGCCAAATAGCCTTCACTCAACTAGAAATAAAAGTTCCAGCATCACCACAACTG
ACAGACTCTTAAATGCACAGGAAGACCATTTAGATGGAATATCTGAGCAACAGTTATGTTTGGT
TACATGATTGATACTGAGGCTGTCAACTCCTGAAAATGGTAGAAATAAAGACACGAGATGACTC
ATCATCTCTTATGTTCCATTTTTGGGATGAAGGACTTATACATTTCAGCACTCATTAGTTCTTT
GTATCCTGGGACATAAAAGTACTCAGTATTGGCCCAAATTGTTTCACATTTCTAGCGTGAGGAG
AAGTTTTCCATTGTCCAGTTGAAGGGCCCTGAAGTTAAGGCTAAAAATTTATTGAAAATGCAGA
TCTGTCAGTAGAACCAGAAGAGTTTGTAATCCTTGATAATTGAGGCACAGAAAAGATTCCCATG
AAGAACTACTCTTTCTAAATGAAAGAGAATTTTTAAACTTAAATTTTGACCTTAAGAACTGGAA
AATTAGCTGAGTGTGCTGGTGCACACCTATAATCCCAGCAGCTTGGGAGGCTGAGACAGGAGGA
TTGCGAGTTCAAAGCCAGCCTCAGCAAAAGCGAGGTGCTAAGCAACTCAGTGAGACCCTGTCTC
TAAATAAAATACAAAATAAGGCTGGGGATGGGGCTCAGTGATGGAGTGCCCCTGAGTTCAATCC
CCAGTACCCACCCCAAAGAATTGGAAAATTAGGCACAGCTTTATCCTGTGTTACAAGAATATAG
TCATTAAAGGTTATAGACATCTAAAGATGGCAATTGTTCCCTTATTAATTCTCTCCTCTGGCCA
CAGGTGAATCATACCCTACATGCTTTCTAACCCGTTCCCCCAAAGCTATCATCTATATAAGCTA
CAGAACAAAGACTCCTTATCCTCTTATTACCCAATTGACCCCAAGACAATGAGACTGAGCCACA
GCACTATGGATTTTCAGCCTCATCCATGGATGTCCCTGCCTGCCTTAGAATTCCTTTTTGAAAA
AGAATTGTTGAGAAACTGGATTTCAATACACAAAATTGTATTTTCCTTCCAATTTGGTTAATAT
ATATTCATTTCCTACATGCACATTAAGGGTGGTTTTGTGTAAATTACTGTGTGATAAAGTCATA
TTGCATTGCAATTGGTTGTTCCAAGATATAGTTTTTTATTGTTGAATAACTGGGAGATTTCTCT
AGAAAGAACACCGCTTTTTCTTTTTCTTTTTAAACTGGGGATTGAAGACTGAACTCAGGTGCT

hide sequence

RefSeq Acc Id:

XM_021725592 ⟹ XP_021581267

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	X	33,335,385 - 33,386,148 (-)	NCBI
SpeTri2.0	NW_004936502	13,176,781 - 13,226,872 (-)	NCBI

Sequence:

show sequence

CTTCCGGTGGGTAGGGGGACAACCAAGGCTTTGGTACTCTGATGGCTAAGGTGAAGCGGTCTCT
GACGCAACTAACTCCTATAGGCTGCGGCGGAGGGAAGGGAAGCCCGGTGGTACAGTCCTCGACC
TTCGCCTTGGCCCCCGAGAAATTGCACTGGGAAAGATAGGGTGGGAAAGCGCGGCCTCCGTGGC
CGAAGCGACCAGCCTTCCAAGATGGCGGCTCCCATAGAGGCAATCCCAAGGGGACAGCCATGTT
CCTTGCCTGACAGTCACTGAAGAAAATTGGAAAGCCCGCCTCTCCTCCGACACTCTCGCACACT
CACGCACCGATGCCGTCTTTCTTGGAGCCTCTGCAGAGTCCCTGGACCAGAACAGTTAGTGGGG
ACTGCAGGATCTTCCTTCTAACCAGGCTCGACTGTGCCGCCAGACCTGGGTGAGCCCACAGATG
CCAGCCCAGCTTCAAGCCCCTGGGAAGGGTCAAATCATCAGCAGGAGAGCCTAAGGGCCCAGGC
CCAGCATGAACATGCCAGCCAATGGAGATTCTCTCCAGTCGTCCCTGGCCCTGGCTGCAGAGAA
ACATGGCGGCTCACTTGAGGTATCCATATCATTTGAGGATGTGACTGTGAACTTCAGCAGGGAG
GAGTGGCAGCATTTGGACCCTGTTCAGAGACGCCTGTACTGGGATGTGACACTGGAGAACTACC
ATCATCTGATCTCAGTGGGTGAAGATATTAGGAAAACTCAACAACAGGAAATTTCTGGAGAAGT
TTCATTCCACTGTGAGAGATTTGATCAACCCACAGGAGAAGATTCACTGTGTTCCATTTTGGAA
GAACTGTGGCAAGAGAATGATCAACTAGAGAGATATCAGGAAAACCAGATGAACCCTTTAAGTC
TTGTCAAAATATTAATTAAGGAGAGGGGCTACGAATGTCAAAACCTTGAAAGAATAATTCACAT
GACTACCAAGCTTGTTCCTTCAATTAAAAGACTCCATAAATATGACACATTTGGAAAGAGTTTG
AAGCATACTTTAAACTTACATAATTATAACCAAAGCACTGCAACAAAGAATCTTGAGAGGATAT
TTGGAAATGGTAACAATTTCGCTGACAGTTCTTTCTCTACTAAGAATGAGAATACTAACACAAG
AGCGAATTCCCATGGACATAATCAGTGTGAAGAACACGTCAATCACAAACAAACTCTCATTGAT
CATCAGAAAATTCCTACTGGGGAGAAACTTCACGGATGTAGTAAATGTGTAAAGGGCTTCAGTC
AGAAGTTGGATCTCTTTGGACATCAGAAAATTCATGCTGGAGAAAAATTCCATGGATGCAACAA
AAGTGAGAAAGTCTTCACTCAGAAGCCAAAAATTGATAGACATCAGAGTATTCAGATAGGAGAG
AAACCCTATGTATGTACTCAATGTGGGAAGGCCTTTACCTTCAAGTCAAACCTCATTACACACC
AGAAAATTCATACTGGGCAGAAGCCCTATAAATGCAGTGAATGTGGGAAAGCCTTTTTCCAGAA
ATCAGATCTCTTTAGACATCTGCGAATTCATACAGGAGAAAAACCTTATGAATGTAGTGAGTGT
GGAAAAGGCTTCTCCCAGAATTCAGACCTCAGTATACATCAGAAAACTCATACCGGAGAGAAAC
ACTATGAATGCAGCGAATGTGGAAAAGCCTTCACAAGAAAATCTGCCCTCAGGATGCATCAGAG
AATTCACACAGGAGAGAAACCTTATGTGTGTACTGAATGTGGGAAGGCCTTCATCCAGAAATCA
CACTTCAATACACATCAGAGAATTCACACTGGAGAGAAACCTTATGAATGCAGAGACTGTGGGA
AATCATTCACTAAGAAGTCGCAGCTCCATGTGCATCAGCGAATTCACACAGGAGAGAAACCCTA
CATATGTACAGAGTGTGGAAAGGTCTTCACTCATAGGACAAATCTCACCACACATCAGAAGACT
CACACTGGGGAGAAGCCCTATATGTGTGCTGAATGTGGGAAGGCTTTTACTGATCAGTCTAATC
TCATCAAACACCAAAAAACTCATACTGGAGAGAAACCCTATAAATGCAATGGCTGTGGGAAAGC
TTTCATATGGAAGTCACGCCTCAAAATCCATCAGAAATCTCATATTGGAGAGAGACACTATGTG
TGCAAGGAATGTGGGAAAGCCTTTATCCAGAAATCAACACTAAGAGTGCATCAGAGAATTCACA
CAGGGGAGAAACCCTATGTTTGTCCTGAATGTGGAAAGGCTTTCATCCAGAAATCACATTTCAT
TGCACACCATAGAATTCATACTGGAGAAAAGCCTTATGAATGTGGTGACTGTGGAAAATGCTTC
ACTAAGAAGTCACAGCTCCGGGTACATCAGAAAATTCACACAGGCGAGAAACCCAATATATGTG
CTGAATGTGGAAAGGCCTTCACGGATCGGTCAAATCTCATAACACACCAGAAAATCCATACAAG
GGAGAAACCCTATAAATGCAGTGACTGTGGAAAAACCTTTACCTGGAAGTCACGCCTCAATATA
CATCAGAAATCCCATACTGGAGAGAGACACTATGAATGCAGTAAATGTGGGAAAGCATTTATCC
AAAAAGCAACACTCAGCATGCATCAGATAATTCATACAGGAAAGAAACCTTATGCTTGTACAGA
ATGTCAGAGAGCTTTCACTGACAGATCGAATCTTATTAAACACCAGAAAACACACAGTGGAGAA
AAACACTACAAAGCCAGTGACTGAAGGCTGTTTCAGAACTGGAAATCACAGCACATCCATCAGA
TAGGTCCTAGTGGTAAAGAGGAATGCCTGATGCTGCAATCACTGTGCAGGGGGAAGTAGAAATG
AGAGGCAGTGACCTGAGGGAGCAGAAGCCAGGCAAAGCCAAATAGCCTTCACTCAACTAGAAAT
AAAAGTTCCAGCATCACCACAACTGACAGACTCTTAAATGCACAGGAAGACCATTTAGATGGAA
TATCTGAGCAACAGTTATGTTTGGTTACATGATTGATACTGAGGCTGTCAACTCCTGAAAATGG
TAGAAATAAAGACACGAGATGACTCATCATCTCTTATGTTCCATTTTTGGGATGAAGGACTTAT
ACATTTCAGCACTCATTAGTTCTTTGTATCCTGGGACATAAAAGTACTCAGTATTGGCCCAAAT
TGTTTCACATTTCTAGCGTGAGGAGAAGTTTTCCATTGTCCAGTTGAAGGGCCCTGAAGTTAAG
GCTAAAAATTTATTGAAAATGCAGATCTGTCAGTAGAACCAGAAGAGTTTGTAATCCTTGATAA
TTGAGGCACAGAAAAGATTCCCATGAAGAACTACTCTTTCTAAATGAAAGAGAATTTTTAAACT
TAAATTTTGACCTTAAGAACTGGAAAATTAGCTGAGTGTGCTGGTGCACACCTATAATCCCAGC
AGCTTGGGAGGCTGAGACAGGAGGATTGCGAGTTCAAAGCCAGCCTCAGCAAAAGCGAGGTGCT
AAGCAACTCAGTGAGACCCTGTCTCTAAATAAAATACAAAATAAGGCTGGGGATGGGGCTCAGT
GATGGAGTGCCCCTGAGTTCAATCCCCAGTACCCACCCCAAAGAATTGGAAAATTAGGCACAGC
TTTATCCTGTGTTACAAGAATATAGTCATTAAAGGTTATAGACATCTAAAGATGGCAATTGTTC
CCTTATTAATTCTCTCCTCTGGCCACAGGTGAATCATACCCTACATGCTTTCTAACCCGTTCCC
CCAAAGCTATCATCTATATAAGCTACAGAACAAAGACTCCTTATCCTCTTATTACCCAATTGAC
CCCAAGACAATGAGACTGAGCCACAGCACTATGGATTTTCAGCCTCATCCATGGATGTCCCTGC
CTGCCTTAGAATTCCTTTTTGAAAAAGAATTGTTGAGAAACTGGATTTCAATACACAAAATTGT
ATTTTCCTTCCAATTTGGTTAATATATATTCATTTCCTACATGCACATTAAGGGTGGTTTTGTG
TAAATTACTGTGTGATAAAGTCATATTGCATTGCAATTGGTTGTTCCAAGATATAGTTTTTTAT
TGTTGAATAACTGGGAGATTTCTCTAGAAAGAACACCGCTTTTTCTTTTTCTTTTTAAACTGGG
GATTGAAGACTGAACTCAGGTGCT

hide sequence

RefSeq Acc Id:

XM_040278448 ⟹ XP_040134382

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	X	33,335,385 - 33,386,148 (-)	NCBI

RefSeq Acc Id:

XM_040278528 ⟹ XP_040134462

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	X	33,335,385 - 33,386,148 (-)	NCBI

RefSeq Acc Id:

XM_040278554 ⟹ XP_040134488

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	X	33,335,385 - 33,386,148 (-)	NCBI

RefSeq Acc Id:

XM_040278614 ⟹ XP_040134548

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	X	33,335,385 - 33,386,147 (-)	NCBI

RefSeq Acc Id:

XM_040278655 ⟹ XP_040134589

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	X	33,335,385 - 33,386,149 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_021581265	(Get FASTA)	NCBI Sequence Viewer
	XP_021581267	(Get FASTA)	NCBI Sequence Viewer
	XP_040134382	(Get FASTA)	NCBI Sequence Viewer
	XP_040134462	(Get FASTA)	NCBI Sequence Viewer
	XP_040134488	(Get FASTA)	NCBI Sequence Viewer
	XP_040134548	(Get FASTA)	NCBI Sequence Viewer
	XP_040134589	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000028251.1
	ENSSTOP00000030772.1
GenBank Protein	KAG3272020	(Get FASTA)	NCBI Sequence Viewer
	KAG3272021	(Get FASTA)	NCBI Sequence Viewer
	KAG3272022	(Get FASTA)	NCBI Sequence Viewer
	KAG3272023	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_021581267 ⟸ XM_021725592
- Peptide Label:	isoform X1
- UniProtKB:	A0A287DB22 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNMPANGDSLQSSLALAAEKHGGSLEVSISFEDVTVNFSREEWQHLDPVQRRLYWDVTLENYHH LISVGEDIRKTQQQEISGEVSFHCERFDQPTGEDSLCSILEELWQENDQLERYQENQMNPLSLV KILIKERGYECQNLERIIHMTTKLVPSIKRLHKYDTFGKSLKHTLNLHNYNQSTATKNLERIFG NGNNFADSSFSTKNENTNTRANSHGHNQCEEHVNHKQTLIDHQKIPTGEKLHGCSKCVKGFSQK LDLFGHQKIHAGEKFHGCNKSEKVFTQKPKIDRHQSIQIGEKPYVCTQCGKAFTFKSNLITHQK IHTGQKPYKCSECGKAFFQKSDLFRHLRIHTGEKPYECSECGKGFSQNSDLSIHQKTHTGEKHY ECSECGKAFTRKSALRMHQRIHTGEKPYVCTECGKAFIQKSHFNTHQRIHTGEKPYECRDCGKS FTKKSQLHVHQRIHTGEKPYICTECGKVFTHRTNLTTHQKTHTGEKPYMCAECGKAFTDQSNLI KHQKTHTGEKPYKCNGCGKAFIWKSRLKIHQKSHIGERHYVCKECGKAFIQKSTLRVHQRIHTG EKPYVCPECGKAFIQKSHFIAHHRIHTGEKPYECGDCGKCFTKKSQLRVHQKIHTGEKPNICAE CGKAFTDRSNLITHQKIHTREKPYKCSDCGKTFTWKSRLNIHQKSHTGERHYECSKCGKAFIQK ATLSMHQIIHTGKKPYACTECQRAFTDRSNLIKHQKTHSGEKHYKASD hide sequence

RefSeq Acc Id:	XP_021581265 ⟸ XM_021725590
- Peptide Label:	isoform X1
- UniProtKB:	A0A287DB22 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNMPANGDSLQSSLALAAEKHGGSLEVSISFEDVTVNFSREEWQHLDPVQRRLYWDVTLENYHH LISVGEDIRKTQQQEISGEVSFHCERFDQPTGEDSLCSILEELWQENDQLERYQENQMNPLSLV KILIKERGYECQNLERIIHMTTKLVPSIKRLHKYDTFGKSLKHTLNLHNYNQSTATKNLERIFG NGNNFADSSFSTKNENTNTRANSHGHNQCEEHVNHKQTLIDHQKIPTGEKLHGCSKCVKGFSQK LDLFGHQKIHAGEKFHGCNKSEKVFTQKPKIDRHQSIQIGEKPYVCTQCGKAFTFKSNLITHQK IHTGQKPYKCSECGKAFFQKSDLFRHLRIHTGEKPYECSECGKGFSQNSDLSIHQKTHTGEKHY ECSECGKAFTRKSALRMHQRIHTGEKPYVCTECGKAFIQKSHFNTHQRIHTGEKPYECRDCGKS FTKKSQLHVHQRIHTGEKPYICTECGKVFTHRTNLTTHQKTHTGEKPYMCAECGKAFTDQSNLI KHQKTHTGEKPYKCNGCGKAFIWKSRLKIHQKSHIGERHYVCKECGKAFIQKSTLRVHQRIHTG EKPYVCPECGKAFIQKSHFIAHHRIHTGEKPYECGDCGKCFTKKSQLRVHQKIHTGEKPNICAE CGKAFTDRSNLITHQKIHTREKPYKCSDCGKTFTWKSRLNIHQKSHTGERHYECSKCGKAFIQK ATLSMHQIIHTGKKPYACTECQRAFTDRSNLIKHQKTHSGEKHYKASD hide sequence

RefSeq Acc Id:	XP_040134589 ⟸ XM_040278655
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_040134462 ⟸ XM_040278528
- Peptide Label:	isoform X1
- UniProtKB:	A0A287DB22 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040134488 ⟸ XM_040278554
- Peptide Label:	isoform X1
- UniProtKB:	A0A287DB22 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040134382 ⟸ XM_040278448
- Peptide Label:	isoform X1
- UniProtKB:	A0A287DB22 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040134548 ⟸ XM_040278614
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSSTOP00000028251 ⟸ ENSSTOT00000030565

Ensembl Acc Id:

ENSSTOP00000030772 ⟸ ENSSTOT00000042723

Protein Domains

C2H2-type KRAB

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000029528	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000030565.1	UniProtKB/TrEMBL
	ENSSTOT00000042723.1	UniProtKB/TrEMBL
Gene3D-CATH	6.10.140.140	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	KRAB	UniProtKB/TrEMBL
	KRAB_dom_sf	UniProtKB/TrEMBL
	Snail/Krueppel_Znf	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/TrEMBL
NCBI Gene	Znf41	ENTREZGENE
PANTHER	PROTEIN ESCARGOT	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN	UniProtKB/TrEMBL
Pfam	KRAB	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
PROSITE	KRAB	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
SMART	KRAB	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF109640	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	A0A287DB22	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD