ZNF41 (zinc finger protein 41) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: ZNF41 (zinc finger protein 41) Chlorocebus sabaeus
Analyze
Symbol: ZNF41
Name: zinc finger protein 41
RGD ID: 18669592
Description: ASSOCIATED WITH autistic disorder (ortholog); cognitive disorder (ortholog); congenital disorder of glycosylation type IIm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X44,623,464 - 44,663,024 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660769,873,075 - 9,916,411 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ZNF41
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X44,623,464 - 44,663,024 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660769,873,075 - 9,916,411 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ZNF41
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X47,445,178 - 47,483,222 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX47,445,178 - 47,483,222 (-)EnsemblGRCh38hg38GRCh38
GRCh37X47,304,577 - 47,342,621 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X47,191,347 - 47,227,289 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X47,062,657 - 47,098,599NCBI
CeleraX51,500,825 - 51,537,610 (-)NCBICelera
Cytogenetic MapXp11.3NCBI
HuRefX45,018,484 - 45,055,126 (-)NCBIHuRef
CHM1_1X47,336,693 - 47,373,468 (-)NCBICHM1_1
T2T-CHM13v2.0X46,855,058 - 46,893,113 (-)NCBIT2T-CHM13v2.0
Znf41
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955516611,591 - 646,109 (+)NCBIChiLan1.0ChiLan1.0
ZNF41
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X49,074,354 - 49,112,547 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X49,076,095 - 49,115,919 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X39,881,999 - 39,922,058 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X47,777,784 - 47,820,046 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX47,777,784 - 47,818,791 (-)Ensemblpanpan1.1panPan2
ZNF41
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X41,031,507 - 41,072,759 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX41,032,742 - 41,071,949 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX15,406,568 - 15,447,850 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X41,165,779 - 41,207,053 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX41,164,276 - 41,207,325 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X41,153,327 - 41,194,594 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X41,141,230 - 41,182,496 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X41,234,341 - 41,275,611 (-)NCBIUU_Cfam_GSD_1.0
Znf41
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X33,335,385 - 33,386,149 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650213,178,189 - 13,227,257 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650213,176,781 - 13,226,872 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF41
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX41,934,977 - 41,984,595 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X41,931,036 - 41,984,439 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Znf41
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248874,276,293 - 4,292,722 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007991529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007991530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007991531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007991532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007991534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007991535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007991536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007991537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007991538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007991539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007991540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037992922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037992923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037992924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037992925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037992926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037992927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037992928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037992929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037992930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037992931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037992932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037992933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037992934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037992935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_007991540   ⟹   XP_007989731
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1X44,623,464 - 44,661,908 (-)NCBI
Vero_WHO_p1.0NW_0236660769,873,075 - 9,914,320 (-)NCBI
Sequence:
RefSeq Acc Id: XM_037992922   ⟹   XP_037848850
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660769,873,075 - 9,916,411 (-)NCBI
RefSeq Acc Id: XM_037992923   ⟹   XP_037848851
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660769,873,075 - 9,914,320 (-)NCBI
RefSeq Acc Id: XM_037992924   ⟹   XP_037848852
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660769,873,075 - 9,916,411 (-)NCBI
RefSeq Acc Id: XM_037992925   ⟹   XP_037848853
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660769,873,075 - 9,914,320 (-)NCBI
RefSeq Acc Id: XM_037992926   ⟹   XP_037848854
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660769,873,075 - 9,914,320 (-)NCBI
RefSeq Acc Id: XM_037992927   ⟹   XP_037848855
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660769,873,075 - 9,916,411 (-)NCBI
RefSeq Acc Id: XM_037992928   ⟹   XP_037848856
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660769,873,075 - 9,914,597 (-)NCBI
RefSeq Acc Id: XM_037992929   ⟹   XP_037848857
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660769,873,075 - 9,914,100 (-)NCBI
RefSeq Acc Id: XM_037992930   ⟹   XP_037848858
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660769,873,075 - 9,916,410 (-)NCBI
RefSeq Acc Id: XM_037992931   ⟹   XP_037848859
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660769,873,075 - 9,916,410 (-)NCBI
RefSeq Acc Id: XM_037992932   ⟹   XP_037848860
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660769,873,075 - 9,914,320 (-)NCBI
RefSeq Acc Id: XM_037992933   ⟹   XP_037848861
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660769,873,075 - 9,914,320 (-)NCBI
RefSeq Acc Id: XM_037992934   ⟹   XP_037848862
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660769,873,075 - 9,916,410 (-)NCBI
RefSeq Acc Id: XM_037992935   ⟹   XP_037848863
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660769,873,075 - 9,914,597 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_007989731   ⟸   XM_007991540
- Peptide Label: isoform X3
RefSeq Acc Id: XP_037848850   ⟸   XM_037992922
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037848855   ⟸   XM_037992927
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037848852   ⟸   XM_037992924
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037848859   ⟸   XM_037992931
- Peptide Label: isoform X2
RefSeq Acc Id: XP_037848862   ⟸   XM_037992934
- Peptide Label: isoform X2
RefSeq Acc Id: XP_037848858   ⟸   XM_037992930
- Peptide Label: isoform X2
RefSeq Acc Id: XP_037848863   ⟸   XM_037992935
- Peptide Label: isoform X2
RefSeq Acc Id: XP_037848856   ⟸   XM_037992928
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037848860   ⟸   XM_037992932
- Peptide Label: isoform X2
RefSeq Acc Id: XP_037848853   ⟸   XM_037992925
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037848861   ⟸   XM_037992933
- Peptide Label: isoform X2
RefSeq Acc Id: XP_037848854   ⟸   XM_037992926
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037848851   ⟸   XM_037992923
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037848857   ⟸   XM_037992929
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
NCBI Gene ZNF41 ENTREZGENE