Chpf2 (chondroitin polymerizing factor 2) - Rat Genome Database

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Gene: Chpf2 (chondroitin polymerizing factor 2) Ictidomys tridecemlineatus
Analyze
Symbol: Chpf2
Name: chondroitin polymerizing factor 2
RGD ID: 12472617
Description: ENCODES a protein that exhibits acetylgalactosaminyltransferase activity (inferred); glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity (inferred); transferase activity (inferred); INVOLVED IN chondroitin sulfate biosynthetic process (inferred); ASSOCIATED WITH genetic disease (ortholog); lethal congenital glycogen storage disease of heart (ortholog); long QT syndrome (ortholog); FOUND IN Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chondroitin sulfate glucuronyltransferase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244051186,258,376 - 6,265,991 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365276,637,480 - 6,646,985 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365276,637,563 - 6,643,051 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Chpf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244051186,258,376 - 6,265,991 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365276,637,480 - 6,646,985 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365276,637,563 - 6,643,051 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHPF2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387151,232,483 - 151,238,822 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7151,232,483 - 151,240,979 (+)EnsemblGRCh38hg38GRCh38
GRCh377150,929,569 - 150,935,908 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367150,560,518 - 150,566,838 (+)NCBINCBI36Build 36hg18NCBI36
Celera7145,486,944 - 145,493,264 (+)NCBICelera
Cytogenetic Map7q36.1NCBI
HuRef7144,741,123 - 144,747,445 (+)NCBIHuRef
CHM1_17150,937,986 - 150,944,308 (+)NCBICHM1_1
T2T-CHM13v2.07152,405,601 - 152,411,942 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27150,259,122 - 150,265,442 (+)NCBI
Chpf2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39524,788,950 - 24,799,396 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl524,791,739 - 24,799,554 (+)EnsemblGRCm39 Ensembl
GRCm38524,586,744 - 24,594,398 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl524,586,741 - 24,594,556 (+)EnsemblGRCm38mm10GRCm38
MGSCv37524,092,568 - 24,098,305 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera521,536,356 - 21,542,131 (+)NCBICelera
Cytogenetic Map5A3NCBI
Chpf2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8411,470,917 - 11,479,096 (-)NCBIGRCr8
mRatBN7.2410,578,470 - 10,585,940 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl410,580,462 - 10,585,916 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx415,726,555 - 15,732,017 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0411,546,753 - 11,552,215 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.049,898,535 - 9,903,997 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.047,108,461 - 7,113,940 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl47,108,462 - 7,113,919 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.047,120,974 - 7,126,445 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.445,959,923 - 5,965,385 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.145,960,045 - 5,964,194 (-)NCBI
Celera46,196,444 - 6,201,906 (-)NCBICelera
Cytogenetic Map4q11NCBI
Chpf2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554915,648,044 - 5,653,158 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554915,649,079 - 5,653,158 (+)NCBIChiLan1.0ChiLan1.0
CHPF2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26187,653,180 - 187,660,780 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1739,663,366 - 39,671,051 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07142,818,243 - 142,825,718 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17154,971,194 - 154,977,557 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7154,971,194 - 154,977,557 (+)Ensemblpanpan1.1panPan2
CHPF2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ROS_Cfam_1.01616,989,604 - 17,001,555 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1616,995,776 - 17,004,841 (+)EnsemblROS_Cfam_1.0 Ensembl
CHPF2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121119,417,357 - 119,423,601 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21119,418,793 - 119,423,455 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607215,389,156 - 15,394,446 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chpf2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248005,406,553 - 5,412,266 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248005,406,606 - 5,412,396 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005326680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000009649   ⟹   ENSSTOP00000008657
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365276,637,480 - 6,646,985 (+)Ensembl
RefSeq Acc Id: XM_005326680   ⟹   XP_005326737
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244051186,258,376 - 6,265,991 (-)NCBI
SpeTri2.0NW_0049365276,637,563 - 6,643,051 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005326737 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000008657.2
GenBank Protein KAG3277193 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005326737   ⟸   XM_005326680
- UniProtKB: I3MDY8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000008657   ⟸   ENSSTOT00000009649


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000009651 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000009649.3 UniProtKB/TrEMBL
Gene3D-CATH 3.90.550.50 UniProtKB/TrEMBL
InterPro Chond_GalNAc UniProtKB/TrEMBL
NCBI Gene Chpf2 ENTREZGENE
PANTHER CHONDROITIN SULFATE GLUCURONYLTRANSFERASE UniProtKB/TrEMBL
  CHONDROITIN SYNTHASE UniProtKB/TrEMBL
Pfam CHGN UniProtKB/TrEMBL
PROSITE PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
UniProt I3MDY8 ENTREZGENE, UniProtKB/TrEMBL