Agpat1 (1-acylglycerol-3-phosphate O-acyltransferase 1)

Gene: Agpat1 (1-acylglycerol-3-phosphate O-acyltransferase 1) Ictidomys tridecemlineatus

Analyze

Symbol:

Agpat1

Name:

1-acylglycerol-3-phosphate O-acyltransferase 1

RGD ID:

12468515

Description:

ENCODES a protein that exhibits 1-acylglycerol-3-phosphate O-acyltransferase activity (inferred); acyltransferase activity (inferred); INVOLVED IN phosphatidic acid biosynthetic process (ortholog); PARTICIPATES IN D-glycericacidemia pathway; familial lipoprotein lipase deficiency pathway; glycerol kinase deficiency pathway; ASSOCIATED WITH exfoliation syndrome (ortholog); genetic disease (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog); FOUND IN endoplasmic reticulum (inferred); membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

1-acyl-sn-glycerol-3-phosphate acyltransferase alpha

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	36,126,425 - 36,135,579 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936727	1,426,857 - 1,434,921 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936727	1,425,784 - 1,434,921 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

exfoliation syndrome (ISO)

genetic disease (ISO)

proteasome-associated autoinflammatory syndrome 1 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

phosphatidic acid biosynthetic process (IEA,ISO)

phospholipid biosynthetic process (IEA)

positive regulation of cytokine production (IEA)

Cellular Component

endoplasmic reticulum (IEA)

membrane (IEA)

Molecular Function

1-acylglycerol-3-phosphate O-acyltransferase activity (IEA)

acyltransferase activity (IEA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

D-glycericacidemia pathway (ISO)

familial lipoprotein lipase deficiency pathway (ISO)

glycerol kinase deficiency pathway (ISO)

glycerolipid metabolic pathway (ISO)

glycerophospholipid metabolic pathway (ISO)

plasmalogen biosynthetic pathway (ISO)

plasmalogen metabolic pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Agpat1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	36,126,425 - 36,135,579 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936727	1,426,857 - 1,434,921 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936727	1,425,784 - 1,434,921 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

AGPAT1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	32,168,212 - 32,178,108 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	32,168,212 - 32,178,096 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	32,135,989 - 32,145,885 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	32,243,967 - 32,253,820 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	32,243,967 - 32,253,820	NCBI
Celera	6	33,703,030 - 33,712,935 (-)	NCBI		Celera
Cytogenetic Map	6	p21.32	NCBI
HuRef	6	31,890,182 - 31,900,086 (-)	NCBI		HuRef
CHM1_1	6	32,138,467 - 32,148,372 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	32,021,403 - 32,031,299 (-)	NCBI		T2T-CHM13v2.0

Agpat1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	34,823,164 - 34,832,392 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	34,823,236 - 34,832,423 (+)	Ensembl		GRCm39 Ensembl
GRCm38	17	34,604,195 - 34,613,449 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	34,604,262 - 34,613,449 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	34,742,806 - 34,750,394 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	34,217,070 - 34,221,505 (+)	NCBI		MGSCv36	mm8
Celera	17	37,701,020 - 37,708,622 (+)	NCBI		Celera
Cytogenetic Map	17	B1	NCBI
cM Map	17	18.18	NCBI

Agpat1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	4,140,565 - 4,149,531 (-)	NCBI		GRCr8
mRatBN7.2	20	4,135,955 - 4,144,880 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	4,135,957 - 4,145,278 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	4,842,454 - 4,849,822 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	4,204,206 - 4,211,574 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	4,735,130 - 4,742,483 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	4,369,399 - 4,378,272 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	4,369,178 - 4,378,269 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	6,448,755 - 6,457,628 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	4,237,798 - 4,245,723 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	20	4,238,024 - 4,245,950 (-)	NCBI
Celera	20	3,886,956 - 3,894,297 (+)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

Agpat1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955437	633,522 - 642,659 (-)	NCBI	ChiLan1.0	ChiLan1.0

AGPAT1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	46,631,264 - 46,639,027 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	42,592,747 - 42,600,509 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	31,815,586 - 31,823,526 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	32,695,475 - 32,704,635 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	32,695,475 - 32,704,432 (-)	Ensembl	panpan1.1		panPan2

AGPAT1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	1,561,494 - 1,570,754 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	1,558,684 - 1,568,962 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	1,695,189 - 1,704,430 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	1,699,692 - 1,708,940 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	1,699,695 - 1,707,218 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	1,562,731 - 1,571,970 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	1,628,340 - 1,637,586 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	1,694,655 - 1,703,904 (-)	NCBI		UU_Cfam_GSD_1.0

AGPAT1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	24,204,905 - 24,213,193 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	24,205,930 - 24,208,430 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	28,025,727 - 28,035,735 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

AGPAT1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	39,854,196 - 39,864,077 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	39,855,010 - 39,863,710 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	32,067,655 - 32,077,548 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Agpat1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	24,145,919 - 24,155,278 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624754	24,145,349 - 24,151,731 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005338952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013364640	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013364641	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021735712	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000008398 ⟹ ENSSTOP00000007526

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936727	1,426,857 - 1,434,921 (+)	Ensembl

RefSeq Acc Id:

XM_005338952 ⟹ XP_005339009

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	36,126,425 - 36,134,089 (-)	NCBI
SpeTri2.0	NW_004936727	1,427,238 - 1,434,921 (+)	NCBI

Sequence:

show sequence

CTGGCCAGCCCCGGAAACCAGCAGGCGTTGGGGAGGGGTGGGGGGGATAGCGGCAGCAGCAGCC
CCAGCCCTCAGAGACAGCAGAAAGGGAGGGAGGGAGGGTGCTGGGGGGACAACCCCCCACCATT
CCTACCGCTATGGGCCCAAACTCCCATTCCCACCTCCCCTCCATCGGCCGGGGCTAGGACACCC
CCATATCCTGTCGCCCCCTTGGCACCGACACCCCGACAGAGGCAGAGACACAGCCAGCCGCCAC
CACCGCTGCCGCAGCCTGGCTGGGGAGGGGGCCGGCCCCCCAGGCCCCCCACCCCACTGAGGTG
GCCAGAATGGAGCTGTGGCCCGGGGCATGGACGGTGCTGCTGCTGCTGCTCTTGCTGCTACTCT
TCCTGCTGCCCACCCTGTGGTTCTGCAGCCCCAGTGCCAAGTATTTCTTTAAGATGGCCTTCTA
CAATGGTTGGATCCTCTTCCTGGCTGTGCTTGCCATCCCTGTGTGTGCCGTGCGAGGACGCAAC
GTTGAGAACATGAAGATCTTGCGTCTAATGCTGCTCCACATCAAATACCTGTATGGGATCCGAG
TGGAGGTGCGAGGGGCCCATCACTTCCCTCCCTCACAGCCCTACGTTGTAGTCTCCAACCACCA
GAGCTCCCTCGACCTGCTTGGAATGATGGAGGTACTGCCAGGCCGCTGTGTTCCCATTGCCAAG
CGTGAACTACTATGGGCTGGCTCTGCTGGGCTGGCCTGCTGGCTGGCAGGAGTCATCTTCATTG
ACCGGAAGCGCACAGGGGATGCTATCAGTGTCATGTCTGAGGTCGCCCAGACCCTGCTTACCCA
GGACGTAAGAGTCTGGGTTTTTCCTGAGGGAACAAGAAATCACAATGGCTCCATGCTGCCCTTC
AAACGTGGCGCCTTCCATCTTGCAGTACAGGCCCAGGTTCCCATTGTCCCCATAGTCATGTCCT
CCTATCAAGACTTCTACTGCAAGAAGGAGCGCCGCTTCACCTCGGGGCGATGTCAGGTACGGGT
GCTGCCACCAGTGCCCACAGAAGGGCTGACACCAGATGATGTCCCTGCTCTGGCTGACAAAGTC
CGGCACTCCATGCTCACCATTTTCCGGGAAATCTCCTCTGATGGCCGGGGTGGTGGTGACTATC
TGAAGAAGCCTGGGGGAGTGGGCGAAGCCCGGCTGTGAGCTTCTCTCCCATCTGTCCCCATCTT
CTGCCCCACACCTACCAACCCATTGGCCCTAAAGCAGGGGCACTCTTCCTCATTTCCTTTCTCC
CCATTCATTCTCCTCTTCAGAATCTTCAAATTCTGATGTGAAAGTACGTACAATTGTCACTCCC
TATCCCTTCCTGGCCCCATCCAGGGACCCTTCTGCCTAGGTGCAGTCTTCATTCTGATCCTCAC
CTCCTGCCATCTTGTCTGTGGGATAGTTGCCTCCCCTTCAACTTGAGTGGCTCATTGTACACAA
GGGTGGGGAATATTCCATCCCATCCCATCCCCAATGGACTCTTCCTTTGCTGTCTTCTCTCCCT
CTCCATCCCACATTGGCCAGTAGACTCATCCTGTCTGTGGAACAATTCATCCCCCCATGCCTAA
GTTCATGGGTTCAGTGGACTGATCCATTTGTGGGGACAACTCCTCACTCTGGCTGGAAGCTGAT
ACCTGGAACACTCCTCCCAGGCTCATCCTGGGAATCTTCCTCAGCACCTTCATCCTCCCTCCCC
GTGGAGCCCCTATCTGTAGGGGCTGGACTCTTCTAACTCAGAGGTCTCATCCCTCCCTTGCCAA
GATGCCCAGGGTTGAGCACACACTCCTGGATGCCAATTTGGTCTCACATTTCTGCTTCCCCCTG
TCCCCATGGTACAGTCCTTCAGTAGTCCTGATCCAACCCAGTCCCCTATTGTCCCCTATACCAT
CCCAACCAGACACAGGGGAACGAGGCAGATATCAGATTCTGCACTCACTGAACCCTGGGGAGTT
GGGGAAAGGAACTGGACCCTGGCCAGAGGGGAGAGGAGGTTGTTTAATTTATTTCTTTCTTTTG
AGGCTTCCCCCTCTCTGAGCCAGTTTTCATTTCCTCCTGGTGGCATCCGCCACTCCCTGCCTCC
TACTCCAGTCCTGTTTCCTCAGCCCAGGAGGTGGGCTGGGAGCAAAAGGAGAGGCTGGCACCCA
GTTTTTCATGGTTGGTTTTTATTATCTGGATAACAGCAAGCAACTGAAAATAAAGAGAGAGAGA
GATCTG

hide sequence

RefSeq Acc Id:

XM_013364640 ⟹ XP_013220094

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	36,126,427 - 36,134,050 (-)	NCBI
SpeTri2.0	NW_004936727	1,427,281 - 1,434,917 (+)	NCBI

Sequence:

show sequence

GGGATAGCGGCAGCAGCAGCCCCAGCCCTCAGAGACAGCAGAAAGGGAGGGAGGGAGGGTGCTG
GGGGGACAACCCCCCACCATTCCTACCGCTATGGGCCCAAACTCCCATTCCCACCTCCCCTCCA
TCGGCCGGGGCTAGGACACCCCCATATCCTGTCGCCCCCTTGGCACCGACACCCCGACAGAGGC
AGAGACACAGCCAGCCGCCACCACCGCTGCCGCAGCCTGGCTGGGGAGGGGGCCGGCCCCCCAG
GCCCCCCACCCCACTGAGAAACCAGGCCACTGTCCTTTGCCCCATTCTCTGCAGGTGGCCAGAA
TGGAGCTGTGGCCCGGGGCATGGACGGTGCTGCTGCTGCTGCTCTTGCTGCTACTCTTCCTGCT
GCCCACCCTGTGGTTCTGCAGCCCCAGTGCCAAGTATTTCTTTAAGATGGCCTTCTACAATGGT
TGGATCCTCTTCCTGGCTGTGCTTGCCATCCCTGTGTGTGCCGTGCGAGGACGCAACGTTGAGA
ACATGAAGATCTTGCGTCTAATGCTGCTCCACATCAAATACCTGTATGGGATCCGAGTGGAGGT
GCGAGGGGCCCATCACTTCCCTCCCTCACAGCCCTACGTTGTAGTCTCCAACCACCAGAGCTCC
CTCGACCTGCTTGGAATGATGGAGGTACTGCCAGGCCGCTGTGTTCCCATTGCCAAGCGTGAAC
TACTATGGGCTGGCTCTGCTGGGCTGGCCTGCTGGCTGGCAGGAGTCATCTTCATTGACCGGAA
GCGCACAGGGGATGCTATCAGTGTCATGTCTGAGGTCGCCCAGACCCTGCTTACCCAGGACGTA
AGAGTCTGGGTTTTTCCTGAGGGAACAAGAAATCACAATGGCTCCATGCTGCCCTTCAAACGTG
GCGCCTTCCATCTTGCAGTACAGGCCCAGGTTCCCATTGTCCCCATAGTCATGTCCTCCTATCA
AGACTTCTACTGCAAGAAGGAGCGCCGCTTCACCTCGGGGCGATGTCAGGTACGGGTGCTGCCA
CCAGTGCCCACAGAAGGGCTGACACCAGATGATGTCCCTGCTCTGGCTGACAAAGTCCGGCACT
CCATGCTCACCATTTTCCGGGAAATCTCCTCTGATGGCCGGGGTGGTGGTGACTATCTGAAGAA
GCCTGGGGGAGTGGGCGAAGCCCGGCTGTGAGCTTCTCTCCCATCTGTCCCCATCTTCTGCCCC
ACACCTACCAACCCATTGGCCCTAAAGCAGGGGCACTCTTCCTCATTTCCTTTCTCCCCATTCA
TTCTCCTCTTCAGAATCTTCAAATTCTGATGTGAAAGTACGTACAATTGTCACTCCCTATCCCT
TCCTGGCCCCATCCAGGGACCCTTCTGCCTAGGTGCAGTCTTCATTCTGATCCTCACCTCCTGC
CATCTTGTCTGTGGGATAGTTGCCTCCCCTTCAACTTGAGTGGCTCATTGTACACAAGGGTGGG
GAATATTCCATCCCATCCCATCCCCAATGGACTCTTCCTTTGCTGTCTTCTCTCCCTCTCCATC
CCACATTGGCCAGTAGACTCATCCTGTCTGTGGAACAATTCATCCCCCCATGCCTAAGTTCATG
GGTTCAGTGGACTGATCCATTTGTGGGGACAACTCCTCACTCTGGCTGGAAGCTGATACCTGGA
ACACTCCTCCCAGGCTCATCCTGGGAATCTTCCTCAGCACCTTCATCCTCCCTCCCCGTGGAGC
CCCTATCTGTAGGGGCTGGACTCTTCTAACTCAGAGGTCTCATCCCTCCCTTGCCAAGATGCCC
AGGGTTGAGCACACACTCCTGGATGCCAATTTGGTCTCACATTTCTGCTTCCCCCTGTCCCCAT
GGTACAGTCCTTCAGTAGTCCTGATCCAACCCAGTCCCCTATTGTCCCCTATACCATCCCAACC
AGACACAGGGGAACGAGGCAGATATCAGATTCTGCACTCACTGAACCCTGGGGAGTTGGGGAAA
GGAACTGGACCCTGGCCAGAGGGGAGAGGAGGTTGTTTAATTTATTTCTTTCTTTTGAGGCTTC
CCCCTCTCTGAGCCAGTTTTCATTTCCTCCTGGTGGCATCCGCCACTCCCTGCCTCCTACTCCA
GTCCTGTTTCCTCAGCCCAGGAGGTGGGCTGGGAGCAAAAGGAGAGGCTGGCACCCAGTTTTTC
ATGGTTGGTTTTTATTATCTGGATAACAGCAAGCAACTGAAAATAAAGAGAGAGAGAGA

hide sequence

RefSeq Acc Id:

XM_013364641 ⟹ XP_013220095

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	36,126,427 - 36,135,579 (-)	NCBI
SpeTri2.0	NW_004936727	1,425,784 - 1,434,917 (+)	NCBI

Sequence:

show sequence

AGAACTGGGGTCTTCTTCCTGGGCTGGACCCCTGGGAGCTTGGGCCTTTCCTACAGTGGCCCTC
ACTGTGTGGCCCAAGGAGCAGAACTAGGTGGCCAGAATGGAGCTGTGGCCCGGGGCATGGACGG
TGCTGCTGCTGCTGCTCTTGCTGCTACTCTTCCTGCTGCCCACCCTGTGGTTCTGCAGCCCCAG
TGCCAAGTATTTCTTTAAGATGGCCTTCTACAATGGTTGGATCCTCTTCCTGGCTGTGCTTGCC
ATCCCTGTGTGTGCCGTGCGAGGACGCAACGTTGAGAACATGAAGATCTTGCGTCTAATGCTGC
TCCACATCAAATACCTGTATGGGATCCGAGTGGAGGTGCGAGGGGCCCATCACTTCCCTCCCTC
ACAGCCCTACGTTGTAGTCTCCAACCACCAGAGCTCCCTCGACCTGCTTGGAATGATGGAGGTA
CTGCCAGGCCGCTGTGTTCCCATTGCCAAGCGTGAACTACTATGGGCTGGCTCTGCTGGGCTGG
CCTGCTGGCTGGCAGGAGTCATCTTCATTGACCGGAAGCGCACAGGGGATGCTATCAGTGTCAT
GTCTGAGGTCGCCCAGACCCTGCTTACCCAGGACGTAAGAGTCTGGGTTTTTCCTGAGGGAACA
AGAAATCACAATGGCTCCATGCTGCCCTTCAAACGTGGCGCCTTCCATCTTGCAGTACAGGCCC
AGGTTCCCATTGTCCCCATAGTCATGTCCTCCTATCAAGACTTCTACTGCAAGAAGGAGCGCCG
CTTCACCTCGGGGCGATGTCAGGTACGGGTGCTGCCACCAGTGCCCACAGAAGGGCTGACACCA
GATGATGTCCCTGCTCTGGCTGACAAAGTCCGGCACTCCATGCTCACCATTTTCCGGGAAATCT
CCTCTGATGGCCGGGGTGGTGGTGACTATCTGAAGAAGCCTGGGGGAGTGGGCGAAGCCCGGCT
GTGAGCTTCTCTCCCATCTGTCCCCATCTTCTGCCCCACACCTACCAACCCATTGGCCCTAAAG
CAGGGGCACTCTTCCTCATTTCCTTTCTCCCCATTCATTCTCCTCTTCAGAATCTTCAAATTCT
GATGTGAAAGTACGTACAATTGTCACTCCCTATCCCTTCCTGGCCCCATCCAGGGACCCTTCTG
CCTAGGTGCAGTCTTCATTCTGATCCTCACCTCCTGCCATCTTGTCTGTGGGATAGTTGCCTCC
CCTTCAACTTGAGTGGCTCATTGTACACAAGGGTGGGGAATATTCCATCCCATCCCATCCCCAA
TGGACTCTTCCTTTGCTGTCTTCTCTCCCTCTCCATCCCACATTGGCCAGTAGACTCATCCTGT
CTGTGGAACAATTCATCCCCCCATGCCTAAGTTCATGGGTTCAGTGGACTGATCCATTTGTGGG
GACAACTCCTCACTCTGGCTGGAAGCTGATACCTGGAACACTCCTCCCAGGCTCATCCTGGGAA
TCTTCCTCAGCACCTTCATCCTCCCTCCCCGTGGAGCCCCTATCTGTAGGGGCTGGACTCTTCT
AACTCAGAGGTCTCATCCCTCCCTTGCCAAGATGCCCAGGGTTGAGCACACACTCCTGGATGCC
AATTTGGTCTCACATTTCTGCTTCCCCCTGTCCCCATGGTACAGTCCTTCAGTAGTCCTGATCC
AACCCAGTCCCCTATTGTCCCCTATACCATCCCAACCAGACACAGGGGAACGAGGCAGATATCA
GATTCTGCACTCACTGAACCCTGGGGAGTTGGGGAAAGGAACTGGACCCTGGCCAGAGGGGAGA
GGAGGTTGTTTAATTTATTTCTTTCTTTTGAGGCTTCCCCCTCTCTGAGCCAGTTTTCATTTCC
TCCTGGTGGCATCCGCCACTCCCTGCCTCCTACTCCAGTCCTGTTTCCTCAGCCCAGGAGGTGG
GCTGGGAGCAAAAGGAGAGGCTGGCACCCAGTTTTTCATGGTTGGTTTTTATTATCTGGATAAC
AGCAAGCAACTGAAAATAAAGAGAGAGAGAGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005339009	(Get FASTA)	NCBI Sequence Viewer
	XP_013220094	(Get FASTA)	NCBI Sequence Viewer
	XP_013220095	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000007526.3

RefSeq Acc Id:

XP_013220095 ⟸ XM_013364641

- UniProtKB:

I3MBK3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MELWPGAWTVLLLLLLLLLFLLPTLWFCSPSAKYFFKMAFYNGWILFLAVLAIPVCAVRGRNVE
NMKILRLMLLHIKYLYGIRVEVRGAHHFPPSQPYVVVSNHQSSLDLLGMMEVLPGRCVPIAKRE
LLWAGSAGLACWLAGVIFIDRKRTGDAISVMSEVAQTLLTQDVRVWVFPEGTRNHNGSMLPFKR
GAFHLAVQAQVPIVPIVMSSYQDFYCKKERRFTSGRCQVRVLPPVPTEGLTPDDVPALADKVRH
SMLTIFREISSDGRGGGDYLKKPGGVGEARL

hide sequence

RefSeq Acc Id:

XP_005339009 ⟸ XM_005338952

- UniProtKB:

I3MBK3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MELWPGAWTVLLLLLLLLLFLLPTLWFCSPSAKYFFKMAFYNGWILFLAVLAIPVCAVRGRNVE
NMKILRLMLLHIKYLYGIRVEVRGAHHFPPSQPYVVVSNHQSSLDLLGMMEVLPGRCVPIAKRE
LLWAGSAGLACWLAGVIFIDRKRTGDAISVMSEVAQTLLTQDVRVWVFPEGTRNHNGSMLPFKR
GAFHLAVQAQVPIVPIVMSSYQDFYCKKERRFTSGRCQVRVLPPVPTEGLTPDDVPALADKVRH
SMLTIFREISSDGRGGGDYLKKPGGVGEARL

hide sequence

RefSeq Acc Id:

XP_013220094 ⟸ XM_013364640

- UniProtKB:

I3MBK3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MELWPGAWTVLLLLLLLLLFLLPTLWFCSPSAKYFFKMAFYNGWILFLAVLAIPVCAVRGRNVE
NMKILRLMLLHIKYLYGIRVEVRGAHHFPPSQPYVVVSNHQSSLDLLGMMEVLPGRCVPIAKRE
LLWAGSAGLACWLAGVIFIDRKRTGDAISVMSEVAQTLLTQDVRVWVFPEGTRNHNGSMLPFKR
GAFHLAVQAQVPIVPIVMSSYQDFYCKKERRFTSGRCQVRVLPPVPTEGLTPDDVPALADKVRH
SMLTIFREISSDGRGGGDYLKKPGGVGEARL

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RefSeq Acc Id:

ENSSTOP00000007526 ⟸ ENSSTOT00000008398

Protein Domains

Phospholipid/glycerol acyltransferase

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000008401	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000008398.3	UniProtKB/TrEMBL
InterPro	AGP_acyltrans	UniProtKB/TrEMBL
	Plipid/glycerol_acylTrfase	UniProtKB/TrEMBL
NCBI Gene	Agpat1	ENTREZGENE
PANTHER	1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE	UniProtKB/TrEMBL
	1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE ALPHA	UniProtKB/TrEMBL
Pfam	Acyltransferase	UniProtKB/TrEMBL
SMART	PlsC	UniProtKB/TrEMBL
Superfamily-SCOP	Glycerol-3-phosphate (1)-acyltransferase	UniProtKB/TrEMBL
UniProt	I3MBK3	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - SMPDB

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - SMPDB