Dapl1 (death associated protein like 1) - Rat Genome Database

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Gene: Dapl1 (death associated protein like 1) Ictidomys tridecemlineatus
Analyze
Symbol: Dapl1
Name: death associated protein like 1
RGD ID: 12466174
Description: ENCODES a protein that exhibits death domain binding (inferred); INVOLVED IN apoptotic signaling pathway (inferred); cellular response to amino acid starvation (inferred); negative regulation of autophagy (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: death-associated protein-like 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303121,851,608 - 121,872,439 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646919,745,234 - 19,766,303 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646919,745,276 - 19,766,112 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Dapl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303121,851,608 - 121,872,439 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646919,745,234 - 19,766,303 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646919,745,276 - 19,766,112 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DAPL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382158,795,317 - 158,815,990 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2158,795,317 - 158,862,781 (+)EnsemblGRCh38hg38GRCh38
GRCh372159,651,829 - 159,672,502 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362159,360,087 - 159,380,743 (+)NCBINCBI36Build 36hg18NCBI36
Celera2153,268,619 - 153,289,288 (+)NCBICelera
Cytogenetic Map2q24.1NCBI
HuRef2151,540,028 - 151,560,709 (+)NCBIHuRef
CHM1_12159,658,065 - 159,678,745 (+)NCBICHM1_1
T2T-CHM13v2.02159,251,305 - 159,278,068 (+)NCBIT2T-CHM13v2.0
Dapl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39259,314,997 - 59,335,364 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl259,314,997 - 59,335,364 (+)EnsemblGRCm39 Ensembl
GRCm38259,484,653 - 59,505,020 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl259,484,653 - 59,505,020 (+)EnsemblGRCm38mm10GRCm38
MGSCv37259,322,710 - 59,343,077 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36259,285,496 - 59,305,722 (+)NCBIMGSCv36mm8
Celera261,176,222 - 61,196,497 (+)NCBICelera
Cytogenetic Map2C1.1NCBI
cM Map233.81NCBI
Dapl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8364,369,734 - 64,389,677 (+)NCBIGRCr8
mRatBN7.2343,960,993 - 43,980,940 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl343,960,810 - 43,980,940 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx347,316,873 - 47,336,814 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0355,900,220 - 55,920,264 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0353,670,819 - 53,690,766 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0345,538,408 - 45,559,281 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl345,538,797 - 45,559,331 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0350,655,568 - 50,675,511 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4341,187,967 - 41,207,910 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1341,084,343 - 41,104,263 (+)NCBI
Celera342,008,067 - 42,028,012 (+)NCBICelera
Cytogenetic Map3q21NCBI
Dapl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544914,696,348 - 14,717,031 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544914,696,413 - 14,716,520 (-)NCBIChiLan1.0ChiLan1.0
DAPL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21361,472,309 - 61,539,660 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B61,487,283 - 61,554,649 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B46,066,663 - 46,087,414 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B163,305,685 - 163,326,409 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B163,305,685 - 163,372,452 (+)Ensemblpanpan1.1panPan2
DAPL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1364,678,544 - 4,698,711 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl364,678,563 - 4,698,710 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha364,818,624 - 4,838,790 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0364,707,981 - 4,822,038 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl364,801,886 - 4,822,037 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1364,819,596 - 4,839,754 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0364,862,928 - 4,883,101 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0364,904,882 - 4,925,068 (+)NCBIUU_Cfam_GSD_1.0
DAPL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1565,796,462 - 65,820,448 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11565,796,462 - 65,820,450 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21573,001,735 - 73,025,732 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DAPL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11044,207,287 - 44,228,313 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1044,207,462 - 44,228,304 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040155,345,967 - 155,366,638 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dapl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247326,785,614 - 6,815,355 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247326,785,704 - 6,815,349 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005315775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000007716   ⟹   ENSSTOP00000006903
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493646919,745,234 - 19,766,303 (-)Ensembl
RefSeq Acc Id: XM_005315775   ⟹   XP_005315832
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303121,851,608 - 121,872,439 (+)NCBI
SpeTri2.0NW_00493646919,745,276 - 19,766,112 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005315832 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000006903.3
GenBank Protein KAG3274518 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005315832   ⟸   XM_005315775
- UniProtKB: I3MA98 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000006903   ⟸   ENSSTOT00000007716


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000007725 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000007716.3 UniProtKB/TrEMBL
InterPro DAP1/DAPL1 UniProtKB/TrEMBL
NCBI Gene Dapl1 ENTREZGENE
PANTHER DEATH-ASSOCIATED PROTEIN-LIKE 1 UniProtKB/TrEMBL
  PTHR13177 UniProtKB/TrEMBL
Pfam DAP UniProtKB/TrEMBL
UniProt I3MA98 ENTREZGENE, UniProtKB/TrEMBL