Znf18 (zinc finger protein 18) - Rat Genome Database

Name: Znf18
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Znf18 (zinc finger protein 18) Ictidomys tridecemlineatus

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Symbol:

Znf18

Name:

zinc finger protein 18

RGD ID:

12457947

Description:

ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); metal ion binding (inferred); INVOLVED IN regulation of DNA-templated transcription (inferred); regulation of transcription by RNA polymerase II (inferred); FOUND IN nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

zinc finger protein 18, transcript variant X1; zinc finger protein 18, transcript variant X2; zinc finger protein 18, transcript variant X3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	51,198,418 - 51,220,595 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936595	4,672,489 - 4,694,767 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936595	4,672,608 - 4,694,745 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of DNA-templated transcription (IEA)

regulation of transcription by RNA polymerase II (IEA)

Cellular Component

nucleus (IEA)

Molecular Function

DNA binding (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IEA)

metal ion binding (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Znf18
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	51,198,418 - 51,220,595 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936595	4,672,489 - 4,694,767 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936595	4,672,608 - 4,694,745 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZNF18
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	11,977,439 - 12,021,527 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	11,977,439 - 11,997,475 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	11,880,756 - 11,900,792 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	11,821,487 - 11,841,414 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	17	11,911,329 - 11,931,257 (-)	NCBI		Celera
Cytogenetic Map	17	p12	NCBI
HuRef	17	11,781,675 - 11,801,612 (-)	NCBI		HuRef
CHM1_1	17	11,889,905 - 11,909,811 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	11,885,437 - 11,929,509 (-)	NCBI		T2T-CHM13v2.0

Zkscan6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	65,697,980 - 65,720,065 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	65,698,001 - 65,720,065 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	65,807,154 - 65,829,239 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	65,807,175 - 65,829,239 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	65,620,746 - 65,642,741 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	65,623,439 - 65,645,434 (+)	NCBI		MGSCv36	mm8
Celera	11	72,741,946 - 72,763,941 (+)	NCBI		Celera
Cytogenetic Map	11	B3	NCBI
cM Map	11	40.53	NCBI

Zfp18
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	50,972,531 - 50,994,796 (+)	NCBI		GRCr8
mRatBN7.2	10	50,473,428 - 50,495,707 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	50,473,483 - 50,495,706 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	55,148,953 - 55,163,995 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	54,638,945 - 54,653,986 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	50,146,935 - 50,161,999 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	52,327,668 - 52,350,944 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	52,334,240 - 52,348,692 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	52,079,444 - 52,100,912 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	52,518,940 - 52,533,893 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	52,532,563 - 52,547,516 (-)	NCBI
Celera	10	49,681,604 - 49,696,457 (+)	NCBI		Celera
Cytogenetic Map	10	q24	NCBI

Znf18
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955467	5,336,459 - 5,355,179 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955467	5,341,958 - 5,355,674 (+)	NCBI	ChiLan1.0	ChiLan1.0

ZNF18
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	61,712,139 - 61,765,292 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	66,526,420 - 66,572,086 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	39,644,525 - 39,665,660 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	44,394,045 - 44,414,720 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	44,394,846 - 44,414,720 (+)	Ensembl	panpan1.1		panPan2

ZNF18
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	36,060,875 - 36,085,765 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	36,061,397 - 36,085,082 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	36,199,243 - 36,224,287 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	36,168,838 - 36,193,895 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	36,168,840 - 36,193,865 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	36,136,029 - 36,161,068 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	36,089,735 - 36,114,753 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	36,273,979 - 36,298,852 (-)	NCBI		UU_Cfam_GSD_1.0

ZNF18
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	56,359,738 - 56,376,835 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	56,359,779 - 56,385,048 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	59,249,423 - 59,274,441 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZNF18
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	11,318,868 - 11,338,124 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	11,318,102 - 11,334,570 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666059	9,919,370 - 9,938,936 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Znf18
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624786	14,409,922 - 14,436,150 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624786	14,413,549 - 14,436,143 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005332885	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021731406	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021731407	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040269460	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040269461	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040269462	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000012652 ⟹ ENSSTOP00000011340

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936595	4,672,489 - 4,694,767 (-)	Ensembl

RefSeq Acc Id:

XM_021731406 ⟹ XP_021587081

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	51,198,418 - 51,220,595 (-)	NCBI
SpeTri2.0	NW_004936595	4,672,608 - 4,694,732 (-)	NCBI

Sequence:

show sequence

CTCCCGGAAGTGCGCCCGAGTCGGCGCCGCGGGCCGAGCACTCAATATCATCTTCTCTTTAGCA
TTCCTGAGAGGATTTGGTTCTTCCCAGAGACAATCCCACCTCAGAAACACTTCTCCTAAAAGAA
CTTGTGAAGCCAGACAATGCCCATTGACCTGGGGCAGGCCCTAGGCCTGCTGCCCTCATTGTCG
AGGAGTGAAGACTTTTCCTTCTCTGGACCAGATGCTGCCCCTCAAGGGGAGCTCTCCAGCCCTG
AGACTGCACGCCAGCTCTTCAGACAGTTTCGTTACCAAGTGCTGTCTGGGCCCCACGAGACCCT
CAGACAACTTCGAAAGCTCTGTTTCCAGTGGCTGCGGCCAGAGGTTCATACCAAGGAGCAGATC
CTAGAGATTCTCATGTTGGAGCAGTTTCTGACCATTCTCCCTGGAGAGATCCAGATGTGGGTGC
GGAAACAGTGTCCAGGCAGTGGAGAAGAAGCAGTGACCCTTGTGGAGAGTTTAAAAGGAGATCC
GAGGAGACTGTGGCAGTGGATCAGCATTCAAGTTCTAGGACAGGAAATCTTATCAGAGAAGAAG
GAATCCTCCATATGCCAAGTGGGTGAAGTGGAGCCCCAGCTTGAAGTGGCACCTCCAGAGTTGG
GACTTCAGAGTACATCCACAGGACCTCGGGAGCTGCTCAGTCACATGGTGAAAGAGGAATCTGA
AGTGGAACCAGAATTAGCTCTGGCTGCTTCCCAGCTTCCTGCCCAACCTGAGGACAGGCTCATT
AGAGACCAGGACTTTGGAGCTGCACTTCTCCCTGCAGCCCCTCAGGAGCACTGGAGACACCTGG
ATTCCAGTCAAAAGGAGCAATACTGGGATCTCATGCTGGAGACCTATGGGAAAATGGTCTCAGG
AGGCATTTCCAACACTAAACCTGACCTAACTAATTCAACAGTATATGGGCAAGAGCTGACAGGA
CTGCAGCTTCATGTCAGTGAGAAGATCCCACGACTCACTTGTGTAGGAGATAGACAAGAGAACG
ACAAAGAGAACTTGAACTTGGAAAATCACAGGAACCAGGAACCACTGGTTGCTTCATGTCACAC
CTTGGGTGAGGCACTTCCTCAGCCTGCCTTGAAGGACTTCTTCAGTGAAGATGACTCTGGACAC
TTTGGAGAAGGGGAAAATCTTCCTGAGGCACCAGAAAACCTTCAGAGTGAGGGGGCAGGGGAAC
AACTCTCTCCTCATGGAAGGAGTTCTGAGAAGCAAGTAGGTCAGTCTATGCCAAATCCACCTCC
AGCAGAACTGTCTGCCATGTGGTTGGAGGAGAAAAGAGAGGCCAGTCAGAAGGGGCAGCCTCGA
GCCCCCATGGCCCAGAAACTCCCCACCTGCAGGGAGTGTGGGAAAACCTTTTATAGGAATTCAC
AGTTGGTTTTTCACCAAAGAACTCATACCGGAGAGACATACTTTCAGTGCCCCATCTGCAAAAA
AGCCTTTCTGCGGAGCTCAGACTTTGTGAAACATCAGAGAACGCACACAGGAGAGAAGCCCTGT
AAATGTGATTACTGTGGGAAAGGCTTTAGTGACTTCTCAGGATTGCGCCACCACGAGAAAATCC
ACACAGGAGAGAAACCCTATAAATGTCCCATCTGTGAGAAAAGCTTTATTCAGAGGTCGAACTT
TAATAGACATCAGAGAGTTCACACAGGAGAGAAACCTTATAAATGTTCTCACTGTGGCAAAAGT
TTCAGCTGGAGCTCAAGCCTTGACAAACATCAGAGATCCCACTTAGGAAAGAAGCCTTTTCAGT
AGCCATGCTCGCTCAGACCCCGTGTGTCCCCAGCTCTATTTTAAAAATGCTCAGTCCTACCTGG
AGGAACAGCATTCCTAAGAGGATATCTTGTTCTCTCTTTTCATGGATTGGAGGGAGAGAACCTG
GACATGGTTTTGGATTGGAAGATGTATCAACCTCTGGATCAGATTTTACAGTGGCTTAAATTCT
TGCTGCTTTATCAGGAGAAAGAATAGTATTTTTTTGTTTCAGGCCATCTCTTTTTTTGGACCTG
TTGCAAAGTTTCACTTAGAGGTTGGTTTTAGAAATGCTCCCTGGAGAGAGTTTAACCAAGTGGC
TGCAATCATTGCTTGTGGGAAGAACCTCAAATCAGTCCTTGAGGATTAGGGTTCTAGGGCAGGT
ATCCTGATGCAGAAGGGGAGGCATAGAGGGCCAGTGAGCTCACATAGGTAAAAAAGTTAACTTC
AAGTGTCTTTTGTTTGAAATAAACTTGGTTGAGTCACTCCCTATTA

hide sequence

RefSeq Acc Id:

XM_021731407 ⟹ XP_021587082

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	51,198,418 - 51,220,584 (-)	NCBI
SpeTri2.0	NW_004936595	4,672,608 - 4,694,745 (-)	NCBI

Sequence:

show sequence

CGCAGCTGCCCAGCTCCCGGAAGTGCGCCCGAGTCGGCGCCGCGGGCCGAGCATTCCTGAGAGG
ATTTGGTTCTTCCCAGAGACAATCCCACCTCAGAAACACTTCTCCTAAAAGAACTTGTGAAGCC
AGACAATGCCCATTGACCTGGGGCAGGCCCTAGGCCTGCTGCCCTCATTGTCGAGGAGTGAAGA
CTTTTCCTTCTCTGGACCAGATGCTGCCCCTCAAGGGGAGCTCTCCAGCCCTGAGACTGCACGC
CAGCTCTTCAGACAGTTTCGTTACCAAGTGCTGTCTGGGCCCCACGAGACCCTCAGACAACTTC
GAAAGCTCTGTTTCCAGTGGCTGCGGCCAGAGGTTCATACCAAGGAGCAGATCCTAGAGATTCT
CATGTTGGAGCAGTTTCTGACCATTCTCCCTGGAGAGATCCAGATGTGGGTGCGGAAACAGTGT
CCAGGCAGTGGAGAAGAAGCAGTGACCCTTGTGGAGAGTTTAAAAGGAGATCCGAGGAGACTGT
GGCAGTGGATCAGCATTCAAGTTCTAGGACAGGAAATCTTATCAGAGAAGAAGGAATCCTCCAT
ATGCCAAGTGGGTGAAGTGGAGCCCCAGCTTGAAGTGGCACCTCCAGAGTTGGGACTTCAGAGT
ACATCCACAGGACCTCGGGAGCTGCTCAGTCACATGGTGAAAGAGGAATCTGAAGTGGAACCAG
AATTAGCTCTGGCTGCTTCCCAGCTTCCTGCCCAACCTGAGGACAGGCTCATTAGAGACCAGGA
CTTTGGAGCTGCACTTCTCCCTGCAGCCCCTCAGGAGCACTGGAGACACCTGGATTCCAGTCAA
AAGGAGCAATACTGGGATCTCATGCTGGAGACCTATGGGAAAATGGTCTCAGGAGGCATTTCCA
ACACTAAACCTGACCTAACTAATTCAACAGTATATGGGCAAGAGCTGACAGGACTGCAGCTTCA
TGTCAGTGAGAAGATCCCACGACTCACTTGTGTAGGAGATAGACAAGAGAACGACAAAGAGAAC
TTGAACTTGGAAAATCACAGGAACCAGGAACCACTGGTTGCTTCATGTCACACCTTGGGTGAGG
CACTTCCTCAGCCTGCCTTGAAGGACTTCTTCAGTGAAGATGACTCTGGACACTTTGGAGAAGG
GGAAAATCTTCCTGAGGCACCAGAAAACCTTCAGAGTGAGGGGGCAGGGGAACAACTCTCTCCT
CATGGAAGGAGTTCTGAGAAGCAAGTAGGTCAGTCTATGCCAAATCCACCTCCAGCAGAACTGT
CTGCCATGTGGTTGGAGGAGAAAAGAGAGGCCAGTCAGAAGGGGCAGCCTCGAGCCCCCATGGC
CCAGAAACTCCCCACCTGCAGGGAGTGTGGGAAAACCTTTTATAGGAATTCACAGTTGGTTTTT
CACCAAAGAACTCATACCGGAGAGACATACTTTCAGTGCCCCATCTGCAAAAAAGCCTTTCTGC
GGAGCTCAGACTTTGTGAAACATCAGAGAACGCACACAGGAGAGAAGCCCTGTAAATGTGATTA
CTGTGGGAAAGGCTTTAGTGACTTCTCAGGATTGCGCCACCACGAGAAAATCCACACAGGAGAG
AAACCCTATAAATGTCCCATCTGTGAGAAAAGCTTTATTCAGAGGTCGAACTTTAATAGACATC
AGAGAGTTCACACAGGAGAGAAACCTTATAAATGTTCTCACTGTGGCAAAAGTTTCAGCTGGAG
CTCAAGCCTTGACAAACATCAGAGATCCCACTTAGGAAAGAAGCCTTTTCAGTAGCCATGCTCG
CTCAGACCCCGTGTGTCCCCAGCTCTATTTTAAAAATGCTCAGTCCTACCTGGAGGAACAGCAT
TCCTAAGAGGATATCTTGTTCTCTCTTTTCATGGATTGGAGGGAGAGAACCTGGACATGGTTTT
GGATTGGAAGATGTATCAACCTCTGGATCAGATTTTACAGTGGCTTAAATTCTTGCTGCTTTAT
CAGGAGAAAGAATAGTATTTTTTTGTTTCAGGCCATCTCTTTTTTTGGACCTGTTGCAAAGTTT
CACTTAGAGGTTGGTTTTAGAAATGCTCCCTGGAGAGAGTTTAACCAAGTGGCTGCAATCATTG
CTTGTGGGAAGAACCTCAAATCAGTCCTTGAGGATTAGGGTTCTAGGGCAGGTATCCTGATGCA
GAAGGGGAGGCATAGAGGGCCAGTGAGCTCACATAGGTAAAAAAGTTAACTTCAAGTGTCTTTT
GTTTGAAATAAACTTGGTTGAGTCACTCCCTATTA

hide sequence

RefSeq Acc Id:

XM_040269460 ⟹ XP_040125394

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	51,198,418 - 51,220,500 (-)	NCBI

RefSeq Acc Id:

XM_040269461 ⟹ XP_040125395

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	51,198,418 - 51,220,500 (-)	NCBI

RefSeq Acc Id:

XM_040269462 ⟹ XP_040125396

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	51,198,418 - 51,217,395 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_021587081	(Get FASTA)	NCBI Sequence Viewer
	XP_021587082	(Get FASTA)	NCBI Sequence Viewer
	XP_040125394	(Get FASTA)	NCBI Sequence Viewer
	XP_040125395	(Get FASTA)	NCBI Sequence Viewer
	XP_040125396	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000011340.3
GenBank Protein	KAG3270003	(Get FASTA)	NCBI Sequence Viewer
	KAG3270004	(Get FASTA)	NCBI Sequence Viewer
	KAG3270005	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_021587082 ⟸ XM_021731407
- Peptide Label:	isoform X1
- UniProtKB:	I3MJK4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPIDLGQALGLLPSLSRSEDFSFSGPDAAPQGELSSPETARQLFRQFRYQVLSGPHETLRQLRK LCFQWLRPEVHTKEQILEILMLEQFLTILPGEIQMWVRKQCPGSGEEAVTLVESLKGDPRRLWQ WISIQVLGQEILSEKKESSICQVGEVEPQLEVAPPELGLQSTSTGPRELLSHMVKEESEVEPEL ALAASQLPAQPEDRLIRDQDFGAALLPAAPQEHWRHLDSSQKEQYWDLMLETYGKMVSGGISNT KPDLTNSTVYGQELTGLQLHVSEKIPRLTCVGDRQENDKENLNLENHRNQEPLVASCHTLGEAL PQPALKDFFSEDDSGHFGEGENLPEAPENLQSEGAGEQLSPHGRSSEKQVGQSMPNPPPAELSA MWLEEKREASQKGQPRAPMAQKLPTCRECGKTFYRNSQLVFHQRTHTGETYFQCPICKKAFLRS SDFVKHQRTHTGEKPCKCDYCGKGFSDFSGLRHHEKIHTGEKPYKCPICEKSFIQRSNFNRHQR VHTGEKPYKCSHCGKSFSWSSSLDKHQRSHLGKKPFQ hide sequence

RefSeq Acc Id:	XP_021587081 ⟸ XM_021731406
- Peptide Label:	isoform X1
- UniProtKB:	I3MJK4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPIDLGQALGLLPSLSRSEDFSFSGPDAAPQGELSSPETARQLFRQFRYQVLSGPHETLRQLRK LCFQWLRPEVHTKEQILEILMLEQFLTILPGEIQMWVRKQCPGSGEEAVTLVESLKGDPRRLWQ WISIQVLGQEILSEKKESSICQVGEVEPQLEVAPPELGLQSTSTGPRELLSHMVKEESEVEPEL ALAASQLPAQPEDRLIRDQDFGAALLPAAPQEHWRHLDSSQKEQYWDLMLETYGKMVSGGISNT KPDLTNSTVYGQELTGLQLHVSEKIPRLTCVGDRQENDKENLNLENHRNQEPLVASCHTLGEAL PQPALKDFFSEDDSGHFGEGENLPEAPENLQSEGAGEQLSPHGRSSEKQVGQSMPNPPPAELSA MWLEEKREASQKGQPRAPMAQKLPTCRECGKTFYRNSQLVFHQRTHTGETYFQCPICKKAFLRS SDFVKHQRTHTGEKPCKCDYCGKGFSDFSGLRHHEKIHTGEKPYKCPICEKSFIQRSNFNRHQR VHTGEKPYKCSHCGKSFSWSSSLDKHQRSHLGKKPFQ hide sequence

RefSeq Acc Id:	XP_040125395 ⟸ XM_040269461
- Peptide Label:	isoform X1
- UniProtKB:	I3MJK4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040125394 ⟸ XM_040269460
- Peptide Label:	isoform X1
- UniProtKB:	I3MJK4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040125396 ⟸ XM_040269462
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSSTOP00000011340 ⟸ ENSSTOT00000012652

Protein Domains

C2H2-type KRAB SCAN box

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000012652	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000012652.3	UniProtKB/TrEMBL
Gene3D-CATH	1.10.4020.10	UniProtKB/TrEMBL
	6.10.140.140	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	KRAB	UniProtKB/TrEMBL
	KRAB_dom_sf	UniProtKB/TrEMBL
	Krueppel_C2H2_ZnF	UniProtKB/TrEMBL
	SCAN_dom	UniProtKB/TrEMBL
	SCAN_sf	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/TrEMBL
NCBI Gene	Znf18	ENTREZGENE
PANTHER	KRAB DOMAIN C2H2 ZINC FINGER	UniProtKB/TrEMBL
	RIKEN CDNA 1700020N01 GENE-RELATED	UniProtKB/TrEMBL
Pfam	KRAB	UniProtKB/TrEMBL
	SCAN	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
PROSITE	KRAB	UniProtKB/TrEMBL
	SCAN_BOX	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
SMART	SCAN	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	Retrovirus capsid dimerization domain-like	UniProtKB/TrEMBL
	SSF109640	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	I3MJK4	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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