Zkscan6 (zinc finger with KRAB and SCAN domains 6) - Rat Genome Database

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Gene: Zkscan6 (zinc finger with KRAB and SCAN domains 6) Mus musculus
Analyze
Symbol: Zkscan6
Name: zinc finger with KRAB and SCAN domains 6
RGD ID: 1312983
MGI Page MGI
Description: Predicted to have DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to localize to nucleus. Is expressed in brain; early conceptus; and genitourinary system. Orthologous to human ZNF18 (zinc finger protein 18); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 1700128E15Rik; D11Ertd714; D11Ertd714e; KOX1; KOX11; Zfp53; Zfp535; zinc finger protein 18; zinc finger protein 535; zinc finger protein with KRAB and SCAN domains 6; Znf18
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391165,697,980 - 65,720,065 (+)NCBIGRCm39mm39
GRCm39 Ensembl1165,698,001 - 65,720,065 (+)Ensembl
GRCm381165,807,154 - 65,829,239 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1165,807,175 - 65,829,239 (+)EnsemblGRCm38mm10GRCm38
MGSCv371165,620,746 - 65,642,741 (+)NCBIGRCm37mm9NCBIm37
MGSCv361165,623,439 - 65,645,434 (+)NCBImm8
Celera1172,741,946 - 72,763,941 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1140.53NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:16964442   PMID:18287559  
PMID:18799693   PMID:20059953   PMID:20412781   PMID:21267068   PMID:21873635   PMID:24952961  


Genomics

Comparative Map Data
Zkscan6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391165,697,980 - 65,720,065 (+)NCBIGRCm39mm39
GRCm39 Ensembl1165,698,001 - 65,720,065 (+)Ensembl
GRCm381165,807,154 - 65,829,239 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1165,807,175 - 65,829,239 (+)EnsemblGRCm38mm10GRCm38
MGSCv371165,620,746 - 65,642,741 (+)NCBIGRCm37mm9NCBIm37
MGSCv361165,623,439 - 65,645,434 (+)NCBImm8
Celera1172,741,946 - 72,763,941 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1140.53NCBI
ZNF18
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1711,977,439 - 11,997,475 (-)EnsemblGRCh38hg38GRCh38
GRCh381711,957,433 - 12,021,522 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371711,880,756 - 11,900,792 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361711,821,487 - 11,841,414 (-)NCBINCBI36hg18NCBI36
Celera1711,911,329 - 11,931,257 (-)NCBI
Cytogenetic Map17p12NCBI
HuRef1711,781,675 - 11,801,612 (-)NCBIHuRef
CHM1_11711,889,899 - 11,909,949 (-)NCBICHM1_1
Zfp18
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21050,473,428 - 50,495,707 (+)NCBI
Rnor_6.0 Ensembl1052,334,240 - 52,348,692 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01052,327,668 - 52,350,944 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01052,079,444 - 52,100,912 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41052,518,940 - 52,533,893 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11052,532,563 - 52,547,516 (-)NCBI
Celera1049,681,604 - 49,696,457 (+)NCBICelera
Cytogenetic Map10q24NCBI
Znf18
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554675,336,459 - 5,355,179 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554675,341,958 - 5,355,674 (+)NCBIChiLan1.0ChiLan1.0
ZNF18
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11744,394,045 - 44,414,720 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1744,394,846 - 44,414,720 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01739,644,525 - 39,665,660 (+)NCBIMhudiblu_PPA_v0panPan3
ZNF18
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1536,060,875 - 36,085,765 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl536,061,397 - 36,085,082 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha536,199,243 - 36,224,287 (-)NCBI
ROS_Cfam_1.0536,168,838 - 36,193,895 (-)NCBI
UMICH_Zoey_3.1536,136,029 - 36,161,068 (-)NCBI
UNSW_CanFamBas_1.0536,089,735 - 36,114,753 (-)NCBI
UU_Cfam_GSD_1.0536,273,979 - 36,298,852 (-)NCBI
Znf18
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560251,198,418 - 51,220,595 (-)NCBI
SpeTri2.0NW_0049365954,672,608 - 4,694,745 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF18
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1256,359,736 - 56,376,835 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11256,359,779 - 56,385,048 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21259,249,423 - 59,274,441 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF18
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11611,318,868 - 11,338,124 (-)NCBI
ChlSab1.1 Ensembl1611,318,102 - 11,334,570 (-)Ensembl
Znf18
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478614,413,549 - 14,436,143 (-)NCBI

Position Markers
Zkscan6  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381165,828,140 - 65,828,566UniSTSGRCm38
GRCm381165,828,140 - 65,828,649UniSTSGRCm38
MGSCv371165,641,642 - 65,642,068UniSTSGRCm37
MGSCv371165,641,642 - 65,642,151UniSTSGRCm37
Celera1172,762,842 - 72,763,351UniSTS
Celera1172,762,842 - 72,763,268UniSTS
Cytogenetic Map11B3UniSTS
cM Map1133.0UniSTS
UniSTS:236615  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381165,828,811 - 65,828,902UniSTSGRCm38
MGSCv371165,642,313 - 65,642,404UniSTSGRCm37
Celera1172,763,513 - 72,763,604UniSTS
Cytogenetic Map11B3UniSTS
cM Map1133.0UniSTS
UniSTS:236617  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381165,828,711 - 65,828,907UniSTSGRCm38
MGSCv371165,642,213 - 65,642,409UniSTSGRCm37
Celera1172,763,413 - 72,763,609UniSTS
Cytogenetic Map11B3UniSTS
cM Map1133.0UniSTS
D11Ertd714e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381165,828,785 - 65,829,022UniSTSGRCm38
MGSCv371165,642,287 - 65,642,524UniSTSGRCm37
Celera1172,763,487 - 72,763,724UniSTS
Cytogenetic Map11B3UniSTS
cM Map1133.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11330000072800000Mouse
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111160000068600000Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111180000066100000Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1231863768609504Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111231863768609504Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111231863768609504Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1231863768609504Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1231863768609504Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111231863768609504Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1231863768609504Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1231863768609504Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1231863768609504Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111231863768609504Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111231863768609504Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111231863769794121Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111710617567187585Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111783196668609504Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113220975066209867Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113568778969794161Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113661246070618665Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113672273870723028Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113719011571190238Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113812528972125383Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114236579176365904Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114236579176365904Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114473921176963931Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4141000Nidd3_mnon-insulin-dependent diabetes mellitus 3 (mouse)Not determined4515120179151308Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
1302186Blmpf2_mbleomycin-induced pulmonary fibrosis 2 (mouse)Not determined115417484467187585Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5539415972319101Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115859972974863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5882844085175703Mouse
11532697Sluc36_msusceptibility to lung cancer 36 (mouse)115936579169591873Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116179599488808902Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116226517996265327Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
4141642Ltxs2_mlethal factor toxin susceptibility 2 (mouse)Not determined116315128768609504Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116342858181939647Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116342858194173092Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116493951098939647Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116493951098939647Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116493951098939647Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:332
Count of miRNA genes:145
Interacting mature miRNAs:159
Transcripts:ENSMUST00000018491, ENSMUST00000071465
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001302374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001302375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_026107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AI646524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK007308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK015125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL596025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC043075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC096688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY224975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000018491   ⟹   ENSMUSP00000018491
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1165,807,244 - 65,829,239 (+)Ensembl
RefSeq Acc Id: ENSMUST00000071465   ⟹   ENSMUSP00000071406
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1165,807,175 - 65,829,238 (+)Ensembl
RefSeq Acc Id: NM_001302374   ⟹   NP_001289303
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391165,698,001 - 65,720,065 (+)NCBI
GRCm381165,807,175 - 65,829,239 (+)NCBI
Celera1172,741,877 - 72,763,941 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001302375   ⟹   NP_001289304
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391165,698,001 - 65,720,065 (+)NCBI
GRCm381165,807,175 - 65,829,239 (+)NCBI
Celera1172,741,877 - 72,763,941 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001362834   ⟹   NP_001349763
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391165,698,791 - 65,720,065 (+)NCBI
GRCm381165,807,965 - 65,829,239 (+)NCBI
Sequence:
RefSeq Acc Id: NM_026107   ⟹   NP_080383
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391165,698,001 - 65,720,065 (+)NCBI
GRCm381165,807,175 - 65,829,239 (+)NCBI
MGSCv371165,620,746 - 65,642,741 (+)RGD
Celera1172,741,877 - 72,763,941 (+)NCBI
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006533717   ⟹   XP_006533780
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391165,697,993 - 65,720,065 (+)NCBI
GRCm381165,807,164 - 65,829,239 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030246128   ⟹   XP_030101988
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391165,698,085 - 65,720,065 (+)NCBI
GRCm381165,807,259 - 65,829,239 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030246129   ⟹   XP_030101989
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391165,697,980 - 65,720,065 (+)NCBI
GRCm381165,807,154 - 65,829,239 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156833   ⟹   XP_036012726
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391165,697,980 - 65,720,065 (+)NCBI
RefSeq Acc Id: XM_036156834   ⟹   XP_036012727
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391165,697,980 - 65,720,065 (+)NCBI
RefSeq Acc Id: XM_036156835   ⟹   XP_036012728
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391165,697,980 - 65,720,065 (+)NCBI
RefSeq Acc Id: XM_036156836   ⟹   XP_036012729
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391165,697,980 - 65,720,065 (+)NCBI
RefSeq Acc Id: XM_036156837   ⟹   XP_036012730
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391165,706,878 - 65,720,065 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_080383   ⟸   NM_026107
- Peptide Label: isoform 1
- UniProtKB: Q810A1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006533780   ⟸   XM_006533717
- Peptide Label: isoform X1
- UniProtKB: Q810A1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001289303   ⟸   NM_001302374
- Peptide Label: isoform 1
- UniProtKB: Q810A1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001289304   ⟸   NM_001302375
- Peptide Label: isoform 2
- UniProtKB: Q810A1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030101989   ⟸   XM_030246129
- Peptide Label: isoform X6
RefSeq Acc Id: XP_030101988   ⟸   XM_030246128
- Peptide Label: isoform X5
RefSeq Acc Id: NP_001349763   ⟸   NM_001362834
- Peptide Label: isoform 2
RefSeq Acc Id: ENSMUSP00000071406   ⟸   ENSMUST00000071465
RefSeq Acc Id: ENSMUSP00000018491   ⟸   ENSMUST00000018491
RefSeq Acc Id: XP_036012729   ⟸   XM_036156836
- Peptide Label: isoform X5
RefSeq Acc Id: XP_036012726   ⟸   XM_036156833
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036012727   ⟸   XM_036156834
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036012728   ⟸   XM_036156835
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036012730   ⟸   XM_036156837
- Peptide Label: isoform X7
Protein Domains
KRAB   SCAN box

Promoters
RGD ID:6822513
Promoter ID:MM_KWN:7907
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_026107,   UC007JLE.1,   UC007JLF.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361165,620,161 - 65,620,872 (+)MPROMDB
RGD ID:8675044
Promoter ID:EPDNEW_M15553
Type:multiple initiation site
Name:Zkscan6_1
Description:Mus musculus zinc finger with KRAB and SCAN domains 6 , transcriptvariant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381165,807,218 - 65,807,278EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1289293 AgrOrtholog
Ensembl Genes ENSMUSG00000018347 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000018491 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000071406 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000018491 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000071465 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.4020.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro KRAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SCAN_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SCAN_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Zfp18 UniProtKB/Swiss-Prot
  Zfp446 UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/Swiss-Prot
  Znf_C2H2_type UniProtKB/Swiss-Prot
KEGG Report mmu:52712 UniProtKB/Swiss-Prot
MGD MGI:1289293 ENTREZGENE
NCBI Gene 52712 ENTREZGENE
PANTHER PTHR23226:SF190 UniProtKB/Swiss-Prot
  PTHR23226:SF210 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SCAN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/Swiss-Prot
PhenoGen Zkscan6 PhenoGen
PROSITE KRAB UniProtKB/Swiss-Prot
  SCAN_BOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot
SMART KRAB UniProtKB/Swiss-Prot
  SCAN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF109640 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57667 UniProtKB/Swiss-Prot
UniProt Q810A1 ENTREZGENE
  Q8CES7_MOUSE UniProtKB/TrEMBL
  ZNF18_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q9D972 UniProtKB/Swiss-Prot