Aga (aspartylglucosaminidase) - Rat Genome Database

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Gene: Aga (aspartylglucosaminidase) Ictidomys tridecemlineatus
Analyze
Symbol: Aga
Name: aspartylglucosaminidase
RGD ID: 12446338
Description: ENCODES a protein that exhibits identical protein binding (ortholog); N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity (ortholog); INVOLVED IN protein deglycosylation (ortholog); ASSOCIATED WITH aspartylglucosaminuria (ortholog); autistic disorder (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred); endoplasmic reticulum (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494327,436,705 - 27,447,598 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365167,847,356 - 7,861,966 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365167,850,995 - 7,861,883 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
AgaSquirrellysosomal storage disease susceptibilityISORGD:13200969068941 RGDPMID:1703489|REF_RGD_ID:1598773
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
AgaSquirrelaspartylglucosaminuria  ISORGD:13200968554872ClinVar Annotator: match by term: Aspartylglucosaminuria | ClinVar Annotator: match by term: Aspartylglucosaminuria, finnish typeClinVarPMID:10399108|PMID:10571008|PMID:11309371|PMID:11754099|PMID:1427775|PMID:15365992|PMID:1559710|PMID:16199547|PMID:1703489|PMID:1722323|PMID:1756604|PMID:17576681|PMID:1765378|PMID:1879549|PMID:18992224|PMID:1904874|PMID:2011603|PMID:21228398|PMID:23271757|PMID:24033266|PMID:25456816|PMID:25525159|PMID:25741868|PMID:27876883|PMID:2811876|PMID:28492532|PMID:29247835|PMID:29930972|PMID:29993127|PMID:30564628|PMID:33439067|PMID:6883788|PMID:7627186|PMID:7881426|PMID:8064811|PMID:8172656|PMID:8457202|PMID:8702913|PMID:8776587|PMID:8830180|PMID:9137882|PMID:9536098|PMID:9737998|PMID:9742145
AgaSquirrelautistic disorder  ISORGD:13200968554872ClinVar Annotator: match by term: AutismClinVarPMID:10571008|PMID:11309371|PMID:1722323|PMID:18992224|PMID:25741868|PMID:28492532|PMID:8457202
AgaSquirrelgenetic disease  ISORGD:13200968554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:11309371|PMID:1722323|PMID:25741868|PMID:28492532|PMID:29247835|PMID:7627186
AgaSquirrelintellectual disability  ISORGD:13200968554872ClinVar Annotator: match by term: Intellectual disabilityClinVarPMID:11309371|PMID:1722323|PMID:18992224|PMID:25456816|PMID:25741868|PMID:28492532|PMID:9737998
AgaSquirrelNeurodevelopmental Disorders  ISORGD:13200968554872ClinVar Annotator: match by term: Neurodevelopmental abnormality | ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:11309371|PMID:1722323|PMID:18992224|PMID:25456816|PMID:25741868|PMID:28492532|PMID:9737998
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
AgaSquirrelaspartylglucosaminuria  ISORGD:13200967240710 OMIM 


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
AgaSquirrelprotein deglycosylation involved_inISORGD:13200969068941 PMID:1281977UniProtPMID:1281977
AgaSquirrelprotein deglycosylation involved_inISORGD:13200969068941 PMID:1904874UniProtPMID:1904874

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
AgaSquirrelcytoplasm located_inIEAPANTHER:PTN000022540150520179 TreeGrafterGO_REF:0000118
AgaSquirrelendoplasmic reticulum located_inIEAUniProtKB:P20933|ensembl:ENSP00000264595150520179 EnsemblGO_REF:0000107
AgaSquirrelextracellular space located_inIEAUniProtKB:P20933|ensembl:ENSP00000264595150520179 EnsemblGO_REF:0000107
AgaSquirrellysosome located_inIEAUniProtKB:P20933|UniProtKB:Q64191|ensembl:ENSMUSP00000033920|ensembl:ENSP00000264595150520179 EnsemblGO_REF:0000107
AgaSquirrellysosome located_inIEAPANTHER:PTN000022540150520179 TreeGrafterGO_REF:0000118

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
AgaSquirrelhydrolase activity enablesIEAInterPro:IPR000246150520179 InterProGO_REF:0000002
AgaSquirrelhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides enablesIEAARBA:ARBA00026848150520179 UniProtGO_REF:0000117
AgaSquirrelidentical protein binding  ISORGD:13096469068941 RGDPMID:2775174|REF_RGD_ID:1598775
AgaSquirrelN4-(beta-N-acetylglucosaminyl)-L-asparaginase activity  ISORGD:13096469068941 RGDPMID:2775174|REF_RGD_ID:1598775
AgaSquirrelN4-(beta-N-acetylglucosaminyl)-L-asparaginase activity enablesIEAUniProtKB:P20933|UniProtKB:Q64191|ensembl:ENSMUSP00000033920|ensembl:ENSP00000264595150520179 EnsemblGO_REF:0000107
AgaSquirrelN4-(beta-N-acetylglucosaminyl)-L-asparaginase activity enablesIEAPANTHER:PTN000022540150520179 TreeGrafterGO_REF:0000118
AgaSquirrelprotein binding enablesISOUniProtKB:O60333-2|UniProtKB:O76024|UniProtKB:P071969068941 PMID:32814053IntActPMID:32814053
AgaSquirrelprotein binding enablesISOUniProtKB:Q8IUG19068941 PMID:32296183IntActPMID:32296183

PMID:30032202  



Aga
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494327,436,705 - 27,447,598 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365167,847,356 - 7,861,966 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365167,850,995 - 7,861,883 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AGA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384177,430,774 - 177,442,437 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4177,430,774 - 177,442,437 (-)EnsemblGRCh38hg38GRCh38
GRCh374178,351,928 - 178,363,591 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364178,588,918 - 178,600,585 (-)NCBINCBI36Build 36hg18NCBI36
Build 344178,727,072 - 178,738,740NCBI
Celera4175,679,083 - 175,690,820 (-)NCBICelera
Cytogenetic Map4q34.3NCBI
HuRef4174,102,201 - 174,113,937 (-)NCBIHuRef
CHM1_14178,328,375 - 178,340,109 (-)NCBICHM1_1
T2T-CHM13v2.04180,769,443 - 180,781,108 (-)NCBIT2T-CHM13v2.0
Aga
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39853,964,718 - 53,976,457 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl853,964,762 - 53,976,456 (+)EnsemblGRCm39 Ensembl
GRCm38853,511,683 - 53,523,422 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl853,511,727 - 53,523,421 (+)EnsemblGRCm38mm10GRCm38
MGSCv37854,597,080 - 54,608,776 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36855,010,424 - 55,022,120 (+)NCBIMGSCv36mm8
Celera856,224,973 - 56,236,712 (+)NCBICelera
Cytogenetic Map8B1.3NCBI
cM Map829.13NCBI
Aga
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81645,191,215 - 45,249,537 (-)NCBIGRCr8
mRatBN7.21638,504,661 - 38,516,607 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1638,504,663 - 38,516,606 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1643,852,185 - 43,864,091 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01647,212,763 - 47,224,669 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01642,568,414 - 42,580,309 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01641,222,225 - 41,234,169 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1641,222,238 - 41,234,095 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01640,992,072 - 41,004,008 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41641,383,536 - 41,395,394 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11641,383,601 - 41,395,548 (-)NCBI
Celera1636,605,222 - 36,617,080 (-)NCBICelera
Cytogenetic Map16p11NCBI
Aga
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540330,471,809 - 30,482,653 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540330,471,809 - 30,482,653 (+)NCBIChiLan1.0ChiLan1.0
AGA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23175,176,804 - 175,188,178 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14175,540,655 - 175,551,997 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04169,624,480 - 169,635,810 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14181,859,116 - 181,870,473 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4181,855,136 - 181,870,473 (-)Ensemblpanpan1.1panPan2
AGA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11652,314,860 - 52,324,879 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1652,314,535 - 52,324,894 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1647,809,385 - 47,818,758 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01654,618,058 - 54,629,014 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1654,618,088 - 54,629,029 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11652,515,396 - 52,524,764 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01653,109,738 - 53,120,301 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01653,347,863 - 53,357,457 (+)NCBIUU_Cfam_GSD_1.0
AGA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1539,701,310 - 39,713,496 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11539,702,900 - 39,714,566 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21545,613,331 - 45,623,930 (-)NCBISscrofa10.2Sscrofa10.2susScr3
AGA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17123,532,215 - 123,544,658 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl7123,528,800 - 123,544,623 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037103,649,972 - 103,662,332 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Aga
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247698,549,598 - 8,560,856 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247698,549,545 - 8,560,423 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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RefSeq Transcripts XM_005325537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040294058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000011870   ⟹   ENSSTOP00000010647
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365167,847,356 - 7,861,966 (-)Ensembl
RefSeq Acc Id: XM_005325537   ⟹   XP_005325594
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494327,436,809 - 27,447,552 (-)NCBI
SpeTri2.0NW_0049365167,850,995 - 7,861,883 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040294058   ⟹   XP_040149992
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494327,436,705 - 27,447,598 (-)NCBI
Protein RefSeqs XP_005325594 (Get FASTA)   NCBI Sequence Viewer  
  XP_040149992 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000010647.2
GenBank Protein KAG3294543 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005325594   ⟸   XM_005325537
- Peptide Label: isoform X2
- UniProtKB: I3MI50 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040149992   ⟸   XM_040294058
- Peptide Label: isoform X1
Ensembl Acc Id: ENSSTOP00000010647   ⟸   ENSSTOT00000011870



1 to 11 of 11 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSTOG00000011875 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000011870.3 UniProtKB/TrEMBL
Gene3D-CATH (Glycosyl)asparaginase UniProtKB/TrEMBL
InterPro Ntn_hydrolases_N UniProtKB/TrEMBL
  Peptidase_T2 UniProtKB/TrEMBL
NCBI Gene Aga ENTREZGENE
PANTHER N(4)-(BETA-N-ACETYLGLUCOSAMINYL)-L-ASPARAGINASE UniProtKB/TrEMBL
  PTHR10188 UniProtKB/TrEMBL
Pfam Asparaginase_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF56235 UniProtKB/TrEMBL
UniProt I3MI50 ENTREZGENE, UniProtKB/TrEMBL
1 to 11 of 11 rows