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Gene: Cog1 (component of oligomeric golgi complex 1) Ictidomys tridecemlineatus

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Symbol:

Cog1

Name:

component of oligomeric golgi complex 1

RGD ID:

12441051

Description:

INVOLVED IN glycosylation (inferred); Golgi organization (inferred); intra-Golgi vesicle-mediated transport (inferred); ASSOCIATED WITH congenital disorder of glycosylation (ortholog); congenital disorder of glycosylation type IIg (ortholog); Enterovirus Infections (ortholog); FOUND IN Golgi apparatus (inferred); Golgi membrane (inferred); Golgi transport complex (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

component of oligomeric golgi complex 1, transcript variant X1; component of oligomeric golgi complex 1, transcript variant X2; component of oligomeric golgi complex 1, transcript variant X3; component of oligomeric golgi complex 1, transcript variant X4; component of oligomeric golgi complex 1, transcript variant X5; component of oligomeric golgi complex 1, transcript variant X6; conserved oligomeric Golgi complex subunit 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	7,521,644 - 7,535,034 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936655	1,017,169 - 1,032,816 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936655	1,020,363 - 1,032,847 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

congenital disorder of glycosylation (ISO)

congenital disorder of glycosylation type IIg (ISO)

Enterovirus Infections (ISO)

genetic disease (ISO)

nephrotic syndrome (ISO)

prostate cancer (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

glycosylation (IEA)

Golgi organization (IEA)

intra-Golgi vesicle-mediated transport (IEA)

protein transport (IEA)

retrograde transport, vesicle recycling within Golgi (IEA)

Cellular Component

Golgi apparatus (IEA)

Golgi membrane (IEA)

Golgi transport complex (IEA)

membrane (IEA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Cog1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	7,521,644 - 7,535,034 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936655	1,017,169 - 1,032,816 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936655	1,020,363 - 1,032,847 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

COG1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	73,193,055 - 73,208,507 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	73,193,055 - 73,208,507 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	71,189,194 - 71,204,646 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	68,700,768 - 68,716,241 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	68,700,777 - 68,716,238	NCBI
Celera	17	67,772,261 - 67,787,792 (+)	NCBI		Celera
Cytogenetic Map	17	q25.1	NCBI
HuRef	17	66,598,252 - 66,613,673 (+)	NCBI		HuRef
CHM1_1	17	71,253,231 - 71,268,706 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	74,082,780 - 74,098,235 (+)	NCBI		T2T-CHM13v2.0

Cog1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	113,540,004 - 113,560,157 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	113,539,995 - 113,557,880 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	113,649,178 - 113,669,331 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	113,649,169 - 113,667,054 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	113,510,843 - 113,523,715 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	113,465,636 - 113,478,491 (+)	NCBI		MGSCv36	mm8
Celera	11	125,413,595 - 125,426,485 (+)	NCBI		Celera
Cytogenetic Map	11	E2	NCBI
cM Map	11	79.1	NCBI

Cog1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	99,192,604 - 99,207,640 (+)	NCBI		GRCr8
mRatBN7.2	10	98,695,481 - 98,708,495 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	98,695,423 - 98,709,292 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	103,747,653 - 103,760,486 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	103,210,694 - 103,223,531 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	98,615,739 - 98,628,535 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	102,167,594 - 102,180,569 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	102,167,771 - 102,180,569 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	101,847,253 - 101,860,117 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	103,279,513 - 103,292,311 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	103,293,878 - 103,306,630 (+)	NCBI
Celera	10	97,302,709 - 97,315,508 (+)	NCBI		Celera
Cytogenetic Map	10	q32.1	NCBI

Cog1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955478	19,386 - 39,433 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955478	19,558 - 38,905 (-)	NCBI	ChiLan1.0	ChiLan1.0

COG1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	89,210,305 - 89,225,893 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	94,019,682 - 94,050,761 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	67,120,989 - 67,136,480 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	72,571,586 - 72,591,953 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	72,576,526 - 72,591,953 (+)	Ensembl	panpan1.1		panPan2

COG1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	6,965,583 - 6,990,905 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	6,957,192 - 6,978,309 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	7,587,172 - 7,600,040 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	7,638,470 - 7,651,346 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	7,638,470 - 7,651,425 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	7,678,886 - 7,691,748 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	7,781,792 - 7,794,619 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	7,842,797 - 7,855,660 (-)	NCBI		UU_Cfam_GSD_1.0

COG1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	7,743,274 - 7,760,504 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	7,745,928 - 7,760,539 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	8,026,369 - 8,040,947 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

COG1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	48,426,303 - 48,441,274 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	48,423,212 - 48,441,227 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	19,247,612 - 19,263,130 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005335984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021733720	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021733721	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021733722	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021733723	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021733724	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040268508	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040268509	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040268510	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002485157	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002485158	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000001832 ⟹ ENSSTOP00000001636

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936655	1,017,169 - 1,032,816 (-)	Ensembl

Ensembl Acc Id:

ENSSTOT00000038539 ⟹ ENSSTOP00000029036

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936655	1,020,411 - 1,032,806 (-)	Ensembl

RefSeq Acc Id:

XM_005335984 ⟹ XP_005336041

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	7,522,546 - 7,535,033 (-)	NCBI
SpeTri2.0	NW_004936655	1,020,363 - 1,032,816 (-)	NCBI

Sequence:

show sequence

CCGGTCCACCATGGCGGCTGCGGCCGCCTCCCCCGCGTTGAAGCGACTGGATCTGCGGGACCCT
GCGGCGCTTTTCGAGACTCATGGGGCTGAGGAGATCCGCGGGCTGGAGCGCCAGGTTCGGGCCG
AGATCGAGCACAAGAAGGAGGAGCTGCGGCAGATGGTGGGAGAGCGGTACCGCGACCTGATCGA
GGCGGCCGACACCATCGGGCAGATGCGCCGCTGCGCTGAGGGGCTGGTGGACGCCGTGAAGGCC
ACCGACCAGTACTGCGCCCGCCTGCGCCAGGCCGGCTGGCCGCGGCCCCCGCGCGCTCCGCAGC
CACAGCCACCATCCCAGGAGAAGTTCTACAGCATGGCTGCCCAGATCAAACTACTCTTAGAAAT
CCCTGAGAAGATCTGGAGCTTCATGGAAGCCTCTCAGTATCTCCATGCCACACAGCTCTACCTG
CTCTGCTGCCATCTTCACAGTCTGCTCCAGCTGGATTCTTCTAGTTCCCGATACAACCCCATCC
TTTCCCGATTTCCTATACTTATCCGGCAGGTAGCAGCAGCCAGCCACTTCCGATCAACCATTCT
GCACGAAAGCAAGATGCTACTCAAATGCCAAGCTGTGTCTGACCAAGCTATAGCTGAGGCCCTC
TGCTCTATAATGCTCTTAGAAGAGAGTTCTCCCCGCCAAGCCCTCACCGACTTCCTGTTGGCCA
GAAAGACAACTATTCAGAAACTTCTCAACCAGCCACACCATGGTGCTGGCATCAAGGCCCAGAT
TTGCTCTTTAGTGGAGTTGCTGGCCACCACTTTGAACCAGGCTCATGCCCTTTTCTACACTTTG
CCAGAAGATCTGCTGCCAGATCCATCCCTGCCGTGTGGCTTGCTCTTCTCTACTCTGGAGACCA
TCACAGGCCAGCAACCTACTGGAAAGGGCATCAGTGTTCTGAAAGGGGAGATGAAGCTCTGCAG
CTGGTTCAGACGCCTGCCAGCATCCGTCATCGAGTTCCAGCCAGCACTCCGAACCCTTGCACAT
CCCATCAGCCAGGAGTACTTGAGAGACACGCTGCAGAAATGGATCCACATGTGTAACGAAGACA
TCAAAAATGGGATCACCAACCTGCTTATGTATGTGAAGAGCATGAAGGGTCTTGCAGGGATCCG
AGATGCCATGTGGGAGTTACTTACCAATGAATCCACCAGTCACAACTGGGAGGTAGTGTGTCAG
AGGCTTCTGGAGAGGCCACTCTTATTCTGGGAGGACATGATGCAGCAGCTCTTCCTGGACCGGT
TACAGACTCTGACAAAAGAAGGCTTTGAATCCATCTCCAGGAGCTCCAAAGAACTCCTGGTCTC
AGCTTTGCAGGAGCTTGAGAGCAGCACCAGCAACTCCACATCAAATAAGCACATCCACTTTGAG
CAGAACATGTCTCTCTTCCTCTGGTCAGAGAGTCCCAGTGACCTGCCTCCAGATGCTGCCTGGG
TCAATGTGGCAAACCGGGGTCAGTTTGCCAGTAGTGGCCTCTCAATGAAAGCCCAAGCTATCAG
CCCTTATGTACAGAACTTCTGCTCTGCCCTGGATTCCAAACTGAAGGTTAAATTGGATGACCTC
CTGGCTTACCTTCCCTCTGATGATGTGCCTCTGCCCAAGGATGCTGTCACCACTCAGACCAAGA
GCTCTGCCTTTGACAGATATGCAGATGCTGGGACTGTGCAGGCCATGCTGCAGACGCACTCGGT
GGCATGCATCAAGCACATCCTGGATGGCATCCAGGTGGAGCTGCAGAACATTGAGGAAGTTGTG
CAAGGCCAGCAGGATGTGCTCCAAGGCACCAAGCTGCACGCCGTGCTTTTCATGGCCAGACTCT
GCCAGTCTCTAGGAGAACTGTGCCCCCACCTGAAACAGTGTATTGTGGGCAAGTCCAGGAGCTC
TGACAAACCATCAAGGGAGGCTAGGGCTCTGAAAAAGCAGGGGAAGAGCAAAGCCCAGGAAATC
CTTCCTGTACAGGCCAAATGGCAAGAAGTTAAAGATGTACTCCTCCAGCAGAGTGTGATGGGCT
ACCGGGTCTGGAGCTCAGCAGTCGTGAAGGTTCTGATTCATGGATTCACCCAGTCATTGCTTTT
AGATGATGCCGGTTCAGTCCTGGCCACAGCTACCAACTGGGATGAATTAGAAATTCAAGAGGAG
ACAGAGTCTGGCAGCAGCGTCACATCAAAGATCAGACTTCCTACACAGCCATCCTGGTATGTAC
AGTCCTTCCTGTTCAGCTTATGCCAGGAAATTAACCGGGTTGGAGGTCATGCTTTGCCAAAGGT
GACACTGCAGGAGATGCTGAAAAGCTGCATGGTTCAAGTGGTAGCTGCCTATGAGGAACTTTCT
GAAGAAAAGCAGATTAAGAGAGAAGGTGCATTCCCAGTAACCCAGAACCGGGCACTGCAGCTCC
TCTATGACCTGCGCTACCTCAGCATCGTTCTGACAGCCAAGAGTGAGGAGGCGAAGAGTGGCCG
CAACAAACCAGACTCCAGGATTGAGAAAGTGACTGACCACCTGGAGGCACTCATCGATCCATTT
GACCTGGACGTTTTCACGCCACACTTCAACAGCAACCTCAACCACCTGGTGCAGCGGACTTCTG
TTCTGTTTGGTTTGGTTACCGGCACTGATAATCAGTTCACCCCCCGGAGTGGCACATTCAACTC
CCAGGAACCCCACAACATTCTGCCACTGGCATCAAGTCAGATCAGGTTTGGACTTCTTCCACTG
AGCATGACAAGCACTCGGAAGGCTAAGTCAACCAGCAGAAGCACTGAAACAAAAACCCAGGTTG
GTCCCCCGGAACTCTCCAAAGCAGATGACCCAATGCATCCTGGCTCCTTGTTCAGACAGCTCAT
CAGCGAGGAAGATGACTCATCTGCATCTTCATTATTCAAACTTGGCTGGCTCGCTAGTATGACT
AAGTAATCGGGAACACTTCTATTCTAAATAAATACTTCTGCATTCTTTCTCCTA

hide sequence

RefSeq Acc Id:

XM_021733721 ⟹ XP_021589396

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	7,521,644 - 7,534,989 (-)	NCBI
SpeTri2.0	NW_004936655	1,020,363 - 1,032,806 (-)	NCBI

Sequence:

show sequence

ATGGCGGCTGCGGCCGCCTCCCCCGCGTTGAAGCGACTGGATCTGCGGGACCCTGCGGCGCTTT
TCGAGACTCATGGGGCTGAGGAGATCCGCGGGCTGGAGCGCCAGGTTCGGGCCGAGATCGAGCA
CAAGAAGGAGGAGCTGCGGCAGATGGTGGGAGAGCGGTACCGCGACCTGATCGAGGCGGCCGAC
ACCATCGGGCAGATGCGCCGCTGCGCTGAGGGGCTGGTGGACGCCGTGAAGGCCACCGACCAGT
ACTGCGCCCGCCTGCGCCAGGCCGGCTGGCCGCGGCCCCCGCGCGCTCCGCAGCCACAGCCACC
ATCCCAGGAGAAGTTCTACAGCATGGCTGCCCAGATCAAACTACTCTTAGAAATCCCTGAGAAG
ATCTGGAGCTTCATGGAAGCCTCTCAGTATCTCCATGCCACACAGCTCTACCTGCTCTGCTGCC
ATCTTCACAGTCTGCTCCAGCTGGATTCTTCTAGTTCCCGATACAACCCCATCCTTTCCCGATT
TCCTATACTTATCCGGCAGGTAGCAGCAGCCAGCCACTTCCGATCAACCATTCTGCACGAAAGC
AAGATGCTACTCAAATGCCAAGCTGTGTCTGACCAAGCTATAGCTGAGGCCCTCTGCTCTATAA
TGCTCTTAGAAGAGAGTTCTCCCCGCCAAGCCCTCACCGACTTCCTGTTGGCCAGAAAGACAAC
TATTCAGAAACTTCTCAACCAGCCACACCATGGTGCTGGCATCAAGGCCCAGATTTGCTCTTTA
GTGGAGTTGCTGGCCACCACTTTGAACCAGGCTCATGCCCTTTTCTACACTTTGCCAGAAGATC
TGCTGCCAGATCCATCCCTGCCGTGTGGCTTGCTCTTCTCTACTCTGGAGACCATCACAGGCCA
GCAACCTACTGGAAAGGGCATCAGTGTTCTGAAAGGGGAGATGAAGCTCTGCAGCTGGTTCAGA
CGCCTGCCAGCATCCGTCATCGAGTTCCAGCCAGCACTCCGAACCCTTGCACATCCCATCAGCC
AGGAGTACTTGAGAGACACGCTGCAGAAATGGATCCACATGTGTAACGAAGACATCAAAAATGG
GATCACCAACCTGCTTATGTATGTGAAGAGCATGAAGGGTCTTGCAGGGATCCGAGATGCCATG
TGGGAGTTACTTACCAATGAATCCACCAGTCACAACTGGGAGGTAGTGTGTCAGAGGCTTCTGG
AGAGGCCACTCTTATTCTGGGAGGACATGATGCAGCAGCTCTTCCTGGACCGGTTACAGACTCT
GACAAAAGAAGGCTTTGAATCCATCTCCAGGAGCTCCAAAGAACTCCTGGTCTCAGCTTTGCAG
GAGCTTGAGAGCAGCACCAGCAACTCCACATCAAATAAGCACATCCACTTTGAGCAGAACATGT
CTCTCTTCCTCTGGTCAGAGAGTCCCAGTGACCTGCCTCCAGATGCTGCCTGGGTCAATGTGGC
AAACCGGGGTCAGTTTGCCAGTAGTGGCCTCTCAATGAAAGCCCAAGCTATCAGCCCTTATGTA
CAGAACTTCTGCTCTGCCCTGGATTCCAAACTGAAGGTTAAATTGGATGACCTCCTGGCTTACC
TTCCCTCTGATGATGTGCCTCTGCCCAAGGATGCTGTCACCACTCAGACCAAGAGCTCTGCCTT
TGACAGATATGCAGATGCTGGGACTGTGCAGGCCATGCTGCAGACGCACTCGGTGGCATGCATC
AAGCACATCCTGGATGGCATCCAGGTGGAGCTGCAGAACATTGAGGAAGTTGTGCAAGGCCAGC
AGGATGTGCTCCAAGGCACCAAGCTGCACGCCGTGCTTTTCATGGCCAGACTCTGCCAGTCTCT
AGGAGAACTGTGCCCCCACCTGAAACAGTGTATTGTGGGCAAGTCCAGGAGCTCTGACAAACCA
TCAAGGGAGGCTAGGGCTCTGAAAAAGCAGGGGAAGAGCAAAGCCCAGGAAATCCTTCCTGTAC
AGGCCAAATGGCAAGAAGTTAAAGATGTACTCCTCCAGCAGAGTGTGATGGGCTACCGGGTCTG
GAGCTCAGCAGTCGTGAAGGTTCTGATTCATGGATTCACCCAGTCATTGCTTTTAGATGATGCC
GGTTCAGTCCTGGCCACAGCTACCAACTGGGATGAATTAGAAATTCAAGAGGAGACAGAGTCTG
GCAGCAGCGTCACATCAAAGATCAGACTTCCTACACAGCCATCCTGGTATGTACAGTCCTTCCT
GTTCAGCTTATGCCAGGAAATTAACCGGGTTGGAGGTCATGCTTTGCCAAAGGTGACACTGCAG
GAGATGCTGAAAAGCTGCATGGTTCAAGTGGTAGCTGCCTATGAGGAACTTTCTGAAGAAAAGC
AGATTAAGAGAGAAGGTGCATTCCCAGTAACCCAGAACCGGGCACTGCAGCTCCTCTATGACCT
GCGCTACCTCAGCATCGTTCTGACAGCCAAGAGTGAGGAGGCGAAGAGTGGCCGCAACAAACCA
GACTCCAGGATTGAGAAAGTGACTGACCACCTGGAGGCACTCATCGATCCATTTGACCTGGACG
TTTTCACGCCACACTTCAACAGCAACCTCAACCACCTGGTGCAGCGGACTTCTGTTCTGTTTGG
TTTGGTTACCGGCACTGATAATCAGTTCACCCCCCGGAGTGGCACATTCAACTCCCAGGAACCC
CACAACATTCTGCCACTGGCATCAAGTCAGATCAGGTTTGGACTTCTTCCACTGAGCATGACAA
GCACTCGGAAGGCTAAGTCAACCAGCAGAAGCACTGAAACAAAAACCCAGGATGCCTCCATTAA
GCCTGCAGGAGTCCTCCTGGGTTGGTCCCCCGGAACTCTCCAAAGCAGATGACCCAATGCATCC
TGGCTCCTTGTTCAGACAGCTCATCAGCGAGGAAGATGACTCATCTGCATCTTCATTATTCAAA
CTTGGCTGGCTCGCTAGTATGACTAAGTAATCGGGAACACTTCTATTCTAAATAAATACTTCTG
CATTCTTTCTCCTA

hide sequence

RefSeq Acc Id:

XM_021733724 ⟹ XP_021589399

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	7,523,089 - 7,534,989 (-)	NCBI
SpeTri2.0	NW_004936655	1,021,061 - 1,032,806 (-)	NCBI

Sequence:

show sequence

ATGGCGGCTGCGGCCGCCTCCCCCGCGTTGAAGCGACTGGATCTGCGGGACCCTGCGGCGCTTT
TCGAGACTCATGGGGCTGAGGAGATCCGCGGGCTGGAGCGCCAGGTTCGGGCCGAGATCGAGCA
CAAGAAGGAGGAGCTGCGGCAGATGGTGGGAGAGCGGTACCGCGACCTGATCGAGGCGGCCGAC
ACCATCGGGCAGATGCGCCGCTGCGCTGAGGGGCTGGTGGACGCCGTGAAGGCCACCGACCAGT
ACTGCGCCCGCCTGCGCCAGGCCGGCTGGCCGCGGCCCCCGCGCGCTCCGCAGCCACAGCCACC
ATCCCAGGAGAAGTTCTACAGCATGGCTGCCCAGATCAAACTACTCTTAGAAATCCCTGAGAAG
ATCTGGAGCTTCATGGAAGCCTCTCAGTATCTCCATGCCACACAGCTCTACCTGCTCTGCTGCC
ATCTTCACAGTCTGCTCCAGCTGGATTCTTCTAGTTCCCGATACAACCCCATCCTTTCCCGATT
TCCTATACTTATCCGGCAGGTAGCAGCAGCCAGCCACTTCCGATCAACCATTCTGCACGAAAGC
AAGATGCTACTCAAATGCCAAGCTGTGTCTGACCAAGCTATAGCTGAGGCCCTCTGCTCTATAA
TGCTCTTAGAAGAGAGTTCTCCCCGCCAAGCCCTCACCGACTTCCTGTTGGCCAGAAAGACAAC
TATTCAGAAACTTCTCAACCAGCCACACCATGGTGCTGGCATCAAGGCCCAGATTTGCTCTTTA
GTGGAGTTGCTGGCCACCACTTTGAACCAGGCTCATGCCCTTTTCTACACTTTGCCAGAAGATC
TGCTGCCAGATCCATCCCTGCCGTGTGGCTTGCTCTTCTCTACTCTGGAGACCATCACAGGCCA
GCAACCTACTGGAAAGGGCATCAGTGTTCTGAAAGGGGAGATGAAGCTCTGCAGCTGGTTCAGA
CGCCTGCCAGCATCCGTCATCGAGTTCCAGCCAGCACTCCGAACCCTTGCACATCCCATCAGCC
AGGAGTACTTGAGAGACACGCTGCAGAAATGGATCCACATGTGTAACGAAGACATCAAAAATGG
GATCACCAACCTGCTTATGTATGTGAAGAGCATGAAGGGTCTTGCAGGGATCCGAGATGCCATG
TGGGAGTTACTTACCAATGAATCCACCAGTCACAACTGGGAGGTAGTGTGTCAGAGGCTTCTGG
AGAGGCCACTCTTATTCTGGGAGGACATGATGCAGCAGCTCTTCCTGGACCGGTTACAGACTCT
GACAAAAGAAGGCTTTGAATCCATCTCCAGGAGCTCCAAAGAACTCCTGGTCTCAGCTTTGCAG
GAGCTTGAGAGCAGCACCAGCAACTCCACATCAAATAAGCACATCCACTTTGAGCAGAACATGT
CTCTCTTCCTCTGGTCAGAGAGTCCCAGTGACCTGCCTCCAGATGCTGCCTGGGTCAATGTGGC
AAACCGGGGTCAGTTTGCCAGTAGTGGCCTCTCAATGAAAGCCCAAGCTATCAGCCCTTATGTA
CAGAACTTCTGCTCTGCCCTGGATTCCAAACTGAAGGTTAAATTGGATGACCTCCTGGCTTACC
TTCCCTCTGATGATGTGCCTCTGCCCAAGGATGCTGTCACCACTCAGACCAAGAGCTCTGCCTT
TGACAGATATGCAGATGCTGGGACTGTGCAGGCCATGCTGCAGACGCACTCGGTGGCATGCATC
AAGCACATCCTGGATGGCATCCAGGTGGAGCTGCAGAACATTGAGGAAGTTGTGCAAGGCCAGC
AGGATGTGCTCCAAGGCACCAAGCTGCACGCCGTGCTTTTCATGGCCAGACTCTGCCAGTCTCT
AGGAGAACTGTGCCCCCACCTGAAACAGTGTATTGTGGGCAAGTCCAGGAGCTCTGACAAACCA
TCAAGGGAGGCTAGGGCTCTGAAAAAGCAGGGGAAGAGCAAAGCCCAGGAAATCCTTCCTGTAC
AGGCCAAATGGCAAGAAGTTAAAGATGTACTCCTCCAGCAGAGTGTGATGGGCTACCGGGTCTG
GAGCTCAGCAGTCGTGAAGGTTCTGATTCATGGATTCACCCAGTCATTGCTTTTAGATGATGCC
GGTTCAGTCCTGGCCACAGCTACCAACTGGGATGAATTAGAAATTCAAGAGGAGACAGAGTCTG
GCAGCAGCGTCACATCAAAGATCAGACTTCCTACACAGCCATCCTGGTATGTACAGTCCTTCCT
GTTCAGCTTATGCCAGGAAATTAACCGGGTTGGAGGTCATGCTTTGCCAAAGGTGACACTGCAG
GAGATGCTGAAAAGCTGCATGGTTCAAGTGGTAGCTGCCTATGAGGAACTTTCTGAAGAAAAGC
AGATTAAGAGAGAAGGTGCATTCCCAGTAACCCAGAACCGGGCACTGCAGCTCCTCTATGACCT
GCGCTACCTCAGCATCGTTCTGACAGCCAAGAGTGAGGAGGCGAAGAGTGGCCGCAACAAACCA
GACTCCAGGATTGAGAAAGTGACTGACCACCTGGAGGCACTCATCGATCCATTTGACCTGGACG
TTTTCACGCCACACTTCAACAGCAACCTCAACCACCTGGTGCAGCGGACTTCTGTTCTGTTTGG
TTTGGTTACCGGCACTGATAATCAGTTCACCCCCCGGAGTGGCACATTCAACTCCCAGGAACCC
CACAACATTCTGCCACTGGCATCAAGTCAGATCAGGTTTGGACTTCTTCCACTGAGCATGACAA
GCACTCGGAAGGCTAAGTCAACCAGCAGAAGCACTGAAACAAAAACCCAGTAGGATGCCTCCAT
TAAGCCTGCAGGAGTCCTCCTGGGTATTTCTGAATTTTGTTGTGTATGCGTGTGTTTGAGAGCT
CGAACAGCCTGTC

hide sequence

RefSeq Acc Id:

XM_040268508 ⟹ XP_040124442

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	7,523,090 - 7,534,989 (-)	NCBI

RefSeq Acc Id:

XM_040268509 ⟹ XP_040124443

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	7,522,628 - 7,534,989 (-)	NCBI

RefSeq Acc Id:

XM_040268510 ⟹ XP_040124444

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	7,524,434 - 7,535,034 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005336041	(Get FASTA)	NCBI Sequence Viewer
	XP_021589396	(Get FASTA)	NCBI Sequence Viewer
	XP_021589399	(Get FASTA)	NCBI Sequence Viewer
	XP_040124442	(Get FASTA)	NCBI Sequence Viewer
	XP_040124443	(Get FASTA)	NCBI Sequence Viewer
	XP_040124444	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000001636.3
	ENSSTOP00000029036.1
GenBank Protein	KAG3268569	(Get FASTA)	NCBI Sequence Viewer
	KAG3268570	(Get FASTA)	NCBI Sequence Viewer
	KAG3268571	(Get FASTA)	NCBI Sequence Viewer
	KAG3268572	(Get FASTA)	NCBI Sequence Viewer
	KAG3268573	(Get FASTA)	NCBI Sequence Viewer
	KAG3268574	(Get FASTA)	NCBI Sequence Viewer
	KAG3268575	(Get FASTA)	NCBI Sequence Viewer
	KAG3268576	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005336041 ⟸ XM_005335984
- Peptide Label:	isoform X1
- UniProtKB:	I3LZA7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAAAASPALKRLDLRDPAALFETHGAEEIRGLERQVRAEIEHKKEELRQMVGERYRDLIEAAD TIGQMRRCAEGLVDAVKATDQYCARLRQAGWPRPPRAPQPQPPSQEKFYSMAAQIKLLLEIPEK IWSFMEASQYLHATQLYLLCCHLHSLLQLDSSSSRYNPILSRFPILIRQVAAASHFRSTILHES KMLLKCQAVSDQAIAEALCSIMLLEESSPRQALTDFLLARKTTIQKLLNQPHHGAGIKAQICSL VELLATTLNQAHALFYTLPEDLLPDPSLPCGLLFSTLETITGQQPTGKGISVLKGEMKLCSWFR RLPASVIEFQPALRTLAHPISQEYLRDTLQKWIHMCNEDIKNGITNLLMYVKSMKGLAGIRDAM WELLTNESTSHNWEVVCQRLLERPLLFWEDMMQQLFLDRLQTLTKEGFESISRSSKELLVSALQ ELESSTSNSTSNKHIHFEQNMSLFLWSESPSDLPPDAAWVNVANRGQFASSGLSMKAQAISPYV QNFCSALDSKLKVKLDDLLAYLPSDDVPLPKDAVTTQTKSSAFDRYADAGTVQAMLQTHSVACI KHILDGIQVELQNIEEVVQGQQDVLQGTKLHAVLFMARLCQSLGELCPHLKQCIVGKSRSSDKP SREARALKKQGKSKAQEILPVQAKWQEVKDVLLQQSVMGYRVWSSAVVKVLIHGFTQSLLLDDA GSVLATATNWDELEIQEETESGSSVTSKIRLPTQPSWYVQSFLFSLCQEINRVGGHALPKVTLQ EMLKSCMVQVVAAYEELSEEKQIKREGAFPVTQNRALQLLYDLRYLSIVLTAKSEEAKSGRNKP DSRIEKVTDHLEALIDPFDLDVFTPHFNSNLNHLVQRTSVLFGLVTGTDNQFTPRSGTFNSQEP HNILPLASSQIRFGLLPLSMTSTRKAKSTSRSTETKTQVGPPELSKADDPMHPGSLFRQLISEE DDSSASSLFKLGWLASMTK hide sequence

RefSeq Acc Id:

XP_021589396 ⟸ XM_021733721

- Peptide Label:

isoform X3

- Sequence:

show sequence

MAAAAASPALKRLDLRDPAALFETHGAEEIRGLERQVRAEIEHKKEELRQMVGERYRDLIEAAD
TIGQMRRCAEGLVDAVKATDQYCARLRQAGWPRPPRAPQPQPPSQEKFYSMAAQIKLLLEIPEK
IWSFMEASQYLHATQLYLLCCHLHSLLQLDSSSSRYNPILSRFPILIRQVAAASHFRSTILHES
KMLLKCQAVSDQAIAEALCSIMLLEESSPRQALTDFLLARKTTIQKLLNQPHHGAGIKAQICSL
VELLATTLNQAHALFYTLPEDLLPDPSLPCGLLFSTLETITGQQPTGKGISVLKGEMKLCSWFR
RLPASVIEFQPALRTLAHPISQEYLRDTLQKWIHMCNEDIKNGITNLLMYVKSMKGLAGIRDAM
WELLTNESTSHNWEVVCQRLLERPLLFWEDMMQQLFLDRLQTLTKEGFESISRSSKELLVSALQ
ELESSTSNSTSNKHIHFEQNMSLFLWSESPSDLPPDAAWVNVANRGQFASSGLSMKAQAISPYV
QNFCSALDSKLKVKLDDLLAYLPSDDVPLPKDAVTTQTKSSAFDRYADAGTVQAMLQTHSVACI
KHILDGIQVELQNIEEVVQGQQDVLQGTKLHAVLFMARLCQSLGELCPHLKQCIVGKSRSSDKP
SREARALKKQGKSKAQEILPVQAKWQEVKDVLLQQSVMGYRVWSSAVVKVLIHGFTQSLLLDDA
GSVLATATNWDELEIQEETESGSSVTSKIRLPTQPSWYVQSFLFSLCQEINRVGGHALPKVTLQ
EMLKSCMVQVVAAYEELSEEKQIKREGAFPVTQNRALQLLYDLRYLSIVLTAKSEEAKSGRNKP
DSRIEKVTDHLEALIDPFDLDVFTPHFNSNLNHLVQRTSVLFGLVTGTDNQFTPRSGTFNSQEP
HNILPLASSQIRFGLLPLSMTSTRKAKSTSRSTETKTQDASIKPAGVLLGWSPGTLQSR

hide sequence

RefSeq Acc Id:

XP_021589399 ⟸ XM_021733724

- Peptide Label:

isoform X4

- Sequence:

show sequence

MAAAAASPALKRLDLRDPAALFETHGAEEIRGLERQVRAEIEHKKEELRQMVGERYRDLIEAAD
TIGQMRRCAEGLVDAVKATDQYCARLRQAGWPRPPRAPQPQPPSQEKFYSMAAQIKLLLEIPEK
IWSFMEASQYLHATQLYLLCCHLHSLLQLDSSSSRYNPILSRFPILIRQVAAASHFRSTILHES
KMLLKCQAVSDQAIAEALCSIMLLEESSPRQALTDFLLARKTTIQKLLNQPHHGAGIKAQICSL
VELLATTLNQAHALFYTLPEDLLPDPSLPCGLLFSTLETITGQQPTGKGISVLKGEMKLCSWFR
RLPASVIEFQPALRTLAHPISQEYLRDTLQKWIHMCNEDIKNGITNLLMYVKSMKGLAGIRDAM
WELLTNESTSHNWEVVCQRLLERPLLFWEDMMQQLFLDRLQTLTKEGFESISRSSKELLVSALQ
ELESSTSNSTSNKHIHFEQNMSLFLWSESPSDLPPDAAWVNVANRGQFASSGLSMKAQAISPYV
QNFCSALDSKLKVKLDDLLAYLPSDDVPLPKDAVTTQTKSSAFDRYADAGTVQAMLQTHSVACI
KHILDGIQVELQNIEEVVQGQQDVLQGTKLHAVLFMARLCQSLGELCPHLKQCIVGKSRSSDKP
SREARALKKQGKSKAQEILPVQAKWQEVKDVLLQQSVMGYRVWSSAVVKVLIHGFTQSLLLDDA
GSVLATATNWDELEIQEETESGSSVTSKIRLPTQPSWYVQSFLFSLCQEINRVGGHALPKVTLQ
EMLKSCMVQVVAAYEELSEEKQIKREGAFPVTQNRALQLLYDLRYLSIVLTAKSEEAKSGRNKP
DSRIEKVTDHLEALIDPFDLDVFTPHFNSNLNHLVQRTSVLFGLVTGTDNQFTPRSGTFNSQEP
HNILPLASSQIRFGLLPLSMTSTRKAKSTSRSTETKTQ

hide sequence

RefSeq Acc Id:	XP_040124443 ⟸ XM_040268509
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_040124442 ⟸ XM_040268508
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_040124444 ⟸ XM_040268510
- Peptide Label:	isoform X5

Ensembl Acc Id:

ENSSTOP00000029036 ⟸ ENSSTOT00000038539

Ensembl Acc Id:

ENSSTOP00000001636 ⟸ ENSSTOT00000001832

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000001829	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000001832.3	UniProtKB/TrEMBL
	ENSSTOT00000038539.1	UniProtKB/TrEMBL
InterPro	COG1	UniProtKB/TrEMBL
NCBI Gene	Cog1	ENTREZGENE
PANTHER	CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 1	UniProtKB/TrEMBL
	PTHR31658	UniProtKB/TrEMBL
Pfam	Vps51	UniProtKB/TrEMBL
UniProt	A0A287D690_ICTTR	UniProtKB/TrEMBL
	I3LZA7	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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