COG1 (component of oligomeric golgi complex 1) - Rat Genome Database

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Gene: COG1 (component of oligomeric golgi complex 1) Chlorocebus sabaeus
Analyze
Symbol: COG1
Name: component of oligomeric golgi complex 1
RGD ID: 18676542
Description: INVOLVED IN glycosylation (inferred); Golgi organization (inferred); intra-Golgi vesicle-mediated transport (inferred); ASSOCIATED WITH congenital disorder of glycosylation (ortholog); congenital disorder of glycosylation type IIg (ortholog); Enterovirus Infections (ortholog); FOUND IN Golgi apparatus (inferred); Golgi transport complex (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: conserved oligomeric Golgi complex subunit 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11648,426,303 - 48,441,274 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1648,423,212 - 48,441,227 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607719,247,612 - 19,263,130 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
COG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11648,426,303 - 48,441,274 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1648,423,212 - 48,441,227 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607719,247,612 - 19,263,130 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
COG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381773,193,055 - 73,208,507 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1773,193,055 - 73,208,507 (+)EnsemblGRCh38hg38GRCh38
GRCh371771,189,194 - 71,204,646 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361768,700,768 - 68,716,241 (+)NCBINCBI36Build 36hg18NCBI36
Build 341768,700,777 - 68,716,238NCBI
Celera1767,772,261 - 67,787,792 (+)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1766,598,252 - 66,613,673 (+)NCBIHuRef
CHM1_11771,253,231 - 71,268,706 (+)NCBICHM1_1
T2T-CHM13v2.01774,082,780 - 74,098,235 (+)NCBIT2T-CHM13v2.0
Cog1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911113,540,004 - 113,560,157 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11113,539,995 - 113,557,880 (+)EnsemblGRCm39 Ensembl
GRCm3811113,649,178 - 113,669,331 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11113,649,169 - 113,667,054 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711113,510,843 - 113,523,715 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611113,465,636 - 113,478,491 (+)NCBIMGSCv36mm8
Celera11125,413,595 - 125,426,485 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1179.1NCBI
Cog1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81099,192,604 - 99,207,640 (+)NCBIGRCr8
mRatBN7.21098,695,481 - 98,708,495 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1098,695,423 - 98,709,292 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10103,747,653 - 103,760,486 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010103,210,694 - 103,223,531 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01098,615,739 - 98,628,535 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010102,167,594 - 102,180,569 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10102,167,771 - 102,180,569 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010101,847,253 - 101,860,117 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410103,279,513 - 103,292,311 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110103,293,878 - 103,306,630 (+)NCBI
Celera1097,302,709 - 97,315,508 (+)NCBICelera
Cytogenetic Map10q32.1NCBI
Cog1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547819,386 - 39,433 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495547819,558 - 38,905 (-)NCBIChiLan1.0ChiLan1.0
COG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21989,210,305 - 89,225,893 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11794,019,682 - 94,050,761 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01767,120,989 - 67,136,480 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11772,571,586 - 72,591,953 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1772,576,526 - 72,591,953 (+)Ensemblpanpan1.1panPan2
COG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.196,965,583 - 6,990,905 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl96,957,192 - 6,978,309 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha97,587,172 - 7,600,040 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.097,638,470 - 7,651,346 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl97,638,470 - 7,651,425 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.197,678,886 - 7,691,748 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.097,781,792 - 7,794,619 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.097,842,797 - 7,855,660 (-)NCBIUU_Cfam_GSD_1.0
Cog1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056027,521,644 - 7,535,034 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366551,017,169 - 1,032,816 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366551,020,363 - 1,032,847 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl127,743,274 - 7,760,504 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1127,745,928 - 7,760,539 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2128,026,369 - 8,040,947 (-)NCBISscrofa10.2Sscrofa10.2susScr3


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 35 32
Low 1 20 28
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008011933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000002446   ⟹   ENSCSAP00000000754
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1648,423,212 - 48,441,227 (-)Ensembl
RefSeq Acc Id: XM_008011933   ⟹   XP_008010124
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11648,426,303 - 48,441,274 (-)NCBI
Vero_WHO_p1.0NW_02366607719,247,612 - 19,263,130 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008010124 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000000754.1
Reference Protein Sequences
RefSeq Acc Id: XP_008010124   ⟸   XM_008011933
- UniProtKB: A0A0D9QWL5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000000754   ⟸   ENSCSAT00000002446


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000004413 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000002446.1 UniProtKB/TrEMBL
InterPro COG1 UniProtKB/TrEMBL
KEGG Report csab:103243108 UniProtKB/TrEMBL
NCBI Gene COG1 ENTREZGENE
PANTHER CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 1 UniProtKB/TrEMBL
  PTHR31658 UniProtKB/TrEMBL
Pfam Vps51 UniProtKB/TrEMBL
UniProt A0A0D9QWL5 ENTREZGENE, UniProtKB/TrEMBL