LOC485449 (L-lactate dehydrogenase A chain-like) - Rat Genome Database

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Gene: LOC485449 (L-lactate dehydrogenase A chain-like) Canis lupus familiaris
Analyze
Symbol: LOC485449
Name: L-lactate dehydrogenase A chain-like
RGD ID: 12419192
Description: ENCODES a protein that exhibits L-lactate dehydrogenase activity (inferred); oxidoreductase activity (inferred); INVOLVED IN carboxylic acid metabolic process (inferred); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: L-lactate dehydrogenase A chain pseudogene
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1223,653,429 - 3,654,566 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha223,691,124 - 3,692,164 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0223,771,349 - 3,772,400 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1223,555,553 - 3,556,588 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0223,619,028 - 3,620,068 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0223,623,684 - 3,624,719 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Variants

.
Variants in LOC485449
16 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_022408230   ⟹   XP_022263938
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1223,653,488 - 3,654,566 (-)NCBI
Dog10K_Boxer_Tasha223,691,124 - 3,692,164 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038430797   ⟹   XP_038286725
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0223,771,349 - 3,772,400 (-)NCBI
RefSeq Acc Id: XM_038506953   ⟹   XP_038362881
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1223,555,553 - 3,556,588 (-)NCBI
RefSeq Acc Id: XM_038569365   ⟹   XP_038425293
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0223,623,684 - 3,624,719 (-)NCBI
RefSeq Acc Id: XM_038633532   ⟹   XP_038489460
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0223,619,028 - 3,620,068 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_022263938   ⟸   XM_022408230
- UniProtKB: A0A8C0PG44 (UniProtKB/TrEMBL),   A0A8P0TJY3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038362881   ⟸   XM_038506953
RefSeq Acc Id: XP_038489460   ⟸   XM_038633532
RefSeq Acc Id: XP_038286725   ⟸   XM_038430797
- UniProtKB: A0A8C0PG44 (UniProtKB/TrEMBL),   A0A8P0TJY3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038425293   ⟸   XM_038569365
- UniProtKB: A0A8C0PG44 (UniProtKB/TrEMBL),   A0A8P0TJY3 (UniProtKB/TrEMBL)
Protein Domains
Lactate/malate dehydrogenase C-terminal   Lactate/malate dehydrogenase N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000059001 UniProtKB/TrEMBL
  ENSCAFG00030024003 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000102181.1 UniProtKB/TrEMBL
  ENSCAFT00030044132.1 UniProtKB/TrEMBL
Gene3D-CATH Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal UniProtKB/TrEMBL
  NAD(P)-binding Rossmann-like Domain UniProtKB/TrEMBL
InterPro L-lactate/malate_DH UniProtKB/TrEMBL
  L-lactate_DH UniProtKB/TrEMBL
  Lactate/malate_DH_C UniProtKB/TrEMBL
  Lactate/malate_DH_N UniProtKB/TrEMBL
  Lactate_DH/Glyco_Ohase_4_C UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
NCBI Gene LOC485449 ENTREZGENE
PANTHER L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) UniProtKB/TrEMBL
  L-LACTATE DEHYDROGENASE A CHAIN UniProtKB/TrEMBL
Pfam Ldh_1_C UniProtKB/TrEMBL
  Ldh_1_N UniProtKB/TrEMBL
PIRSF Lac_mal_DH UniProtKB/TrEMBL
PRINTS LLDHDRGNASE UniProtKB/TrEMBL
Superfamily-SCOP LDH C-terminal domain-like UniProtKB/TrEMBL
  NAD(P)-binding Rossmann-fold domains UniProtKB/TrEMBL
UniProt A0A8C0PG44 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0TJY3 ENTREZGENE
UniProt Secondary A0A8P0TJY3 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-09-12 LOC485449  L-lactate dehydrogenase A chain-like    L-lactate dehydrogenase A chain pseudogene  Symbol and/or name change 5135510 APPROVED